View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_low_162 (Length: 217)

Name: NF18178_low_162
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_low_162
NF18178_low_162
[»] chr1 (19 HSPs)
chr1 (1-208)||(37939425-37939632)
chr1 (93-208)||(37940099-37940214)
chr1 (95-208)||(37939921-37940034)
chr1 (95-207)||(37939966-37940078)
chr1 (95-208)||(37940011-37940124)
chr1 (95-208)||(37940056-37940169)
chr1 (109-208)||(37939890-37939989)
chr1 (111-208)||(37939847-37939944)
chr1 (94-207)||(37940145-37940258)
chr1 (95-208)||(37940236-37940349)
chr1 (94-206)||(37939563-37939675)
chr1 (97-208)||(37940283-37940394)
chr1 (93-171)||(37940324-37940402)
chr1 (99-208)||(37940195-37940304)
chr1 (95-180)||(37939741-37939826)
chr1 (93-182)||(37940369-37940458)
chr1 (95-208)||(37939654-37939764)
chr1 (95-208)||(37939786-37939899)
chr1 (95-196)||(37939699-37939797)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 37939425 - 37939632
Alignment:
Q  1 ggtttctgtagactgttctggaattgaagatgcgtttggttgctcctcttcccttcgttccgttgaatgttgttctggttctttctgattttcctcaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37939425 ggtttctgtagactgttctggaattgaagatgcgtttggttgctcctcttcccttcgttccgttgaatgttgttctggttctttctgattttcctcaact 37939524  T
Q  101 tcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcagtagcca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37939525 tcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacaggttcttcttttaccgtttctgtagcttgaacttcagtagcca 37939624  T
Q  201 caggttct 208  Q
    ||||||||    
T  37939625 caggttct 37939632  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 37940099 - 37940214
Alignment:
Q  93 cctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttc 192  Q
    |||||||||||||  ||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||    
T  37940099 cctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcagtagccacgggttcttcttttactgtttctgtagcttcagcttc 37940198  T
Q  193 agtagccacaggttct 208  Q
    |||||| | |||||||    
T  37940199 agtagctagaggttct 37940214  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 37939921 - 37940034
Alignment:
Q  95 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 194  Q
    |||||||||||| |||||| |||  ||||||||||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  37939921 tcaacttcagtagccacagattcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcag 37940020  T
Q  195 tagccacaggttct 208  Q
    ||||||| ||||||    
T  37940021 tagccactggttct 37940034  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 95 - 207
Target Start/End: Original strand, 37939966 - 37940078
Alignment:
Q  95 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 194  Q
    |||||||||||| |||| |||||  ||||||||||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  37939966 tcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcag 37940065  T
Q  195 tagccacaggttc 207  Q
    ||||  |||||||    
T  37940066 tagctgcaggttc 37940078  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 37940011 - 37940124
Alignment:
Q  95 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 194  Q
    |||||||||||| |||| |||||  ||||||||||||||||||  ||||||||||||||  | ||||| |||||||||||||||||||| | ||||||||    
T  37940011 tcaacttcagtagccactggttcttcttttactgtttctgtagcttcaacttcagtagctgcaggttcgtcttttaccgtttctgtagcctcaacttcag 37940110  T
Q  195 tagccacaggttct 208  Q
    | ||||||||||||    
T  37940111 ttgccacaggttct 37940124  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 37940056 - 37940169
Alignment:
Q  95 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 194  Q
    |||||||||||| |  |||||||  ||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||||||  | ||||||||    
T  37940056 tcaacttcagtagctgcaggttcgtcttttaccgtttctgtagcctcaacttcagttgccacaggttcttcttttaccgtttctgtaggctcaacttcag 37940155  T
Q  195 tagccacaggttct 208  Q
    ||||||| ||||||    
T  37940156 tagccacgggttct 37940169  T

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Target: chr1; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 37939890 - 37939989
Alignment:
Q  109 cacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttct 208  Q
    |||||||||  ||||||| ||||||||||  ||||||||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  37939890 cacaggttcttcttttacggtttctgtagcttcaacttcagtagccacagattcttcttttactgtttctgtagcttcaacttcagtagccactggttct 37939989  T

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Target: chr1; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 37939847 - 37939944
Alignment:
Q  111 caggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttct 208  Q
    |||||||| |||||||  ||||||||||||||||| |||| | ||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  37939847 caggttcatcttttaccatttctgtaggctcaactacagttgtcacaggttcttcttttacggtttctgtagcttcaacttcagtagccacagattct 37939944  T

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Target: chr1; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 94 - 207
Target Start/End: Original strand, 37940145 - 37940258
Alignment:
Q  94 ctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttca 193  Q
    ||||||||||||| |||| |||||  ||||||||||||||||||  ||| |||||||||| |  |||||||||||||||||||||||||  | |||||||    
T  37940145 ctcaacttcagtagccacgggttcttcttttactgtttctgtagcttcagcttcagtagctagaggttcttcttttaccgtttctgtaggatcaacttca 37940244  T
Q  194 gtagccacaggttc 207  Q
    ||| ||||||||||    
T  37940245 gtaaccacaggttc 37940258  T

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Target: chr1; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 37940236 - 37940349
Alignment:
Q  95 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 194  Q
    |||||||||||||||||||||||  ||||||| |||||||||  || ||||||||||||  | |||||||||||||| ||||| ||||| | ||||||||    
T  37940236 tcaacttcagtaaccacaggttcgtcttttacggtttctgtaaccttaacttcagtagctgcaggttcttcttttactgtttccgtagcctcaacttcag 37940335  T
Q  195 tagccacaggttct 208  Q
    |||||||| |||||    
T  37940336 tagccacaagttct 37940349  T

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Target: chr1; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 37939563 - 37939675
Alignment:
Q  94 ctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttca 193  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||  | ||||||||||||||| ||||||||||||||| ||||| |||  | |||||||    
T  37939563 ctcaacttcagtagccacaggttcttcttttaccgtttctgtagcttgaacttcagtagccacaggttcttcttttaccatttctctaggatcaacttca 37939662  T
Q  194 gtagccacaggtt 206  Q
    ||| |||||||||    
T  37939663 gtaaccacaggtt 37939675  T

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Target: chr1; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 37940283 - 37940394
Alignment:
Q  97 aacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcagta 196  Q
    |||||||||| |  |||||||  ||||||||||||| |||| ||||||||||||||||||  ||||||||||||  ||||||||||| | ||||||||||    
T  37940283 aacttcagtagctgcaggttcttcttttactgtttccgtagcctcaacttcagtagccacaagttcttcttttagtgtttctgtagcctcaacttcagta 37940382  T
Q  197 gccacaggttct 208  Q
     |||| ||||||    
T  37940383 accacgggttct 37940394  T

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Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 37940324 - 37940402
Alignment:
Q  93 cctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttac 171  Q
    |||||||||||||| ||||| ||||  |||||| ||||||||||| ||||||||||||| |||||||||||||||||||    
T  37940324 cctcaacttcagtagccacaagttcttcttttagtgtttctgtagcctcaacttcagtaaccacgggttcttcttttac 37940402  T

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Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 37940195 - 37940304
Alignment:
Q  99 cttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcagtagc 198  Q
    |||||||| | | ||||||  ||||||| ||||||||||| |||||||||||| |||| ||||| |||||||| ||||||||| | | ||||||||||||    
T  37940195 cttcagtagctagaggttcttcttttaccgtttctgtaggatcaacttcagtaaccacaggttcgtcttttacggtttctgtaaccttaacttcagtagc 37940294  T
Q  199 cacaggttct 208  Q
      ||||||||    
T  37940295 tgcaggttct 37940304  T

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Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 37939741 - 37939826
Alignment:
Q  95 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgt 180  Q
    |||||||| ||| |||||| |||  |||||||||| |||||||| |||||||||||| | |  ||||| |||||||||||||||||    
T  37939741 tcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcagtaactataggttcgtcttttaccgtttctgt 37939826  T

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Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 182
Target Start/End: Original strand, 37940369 - 37940458
Alignment:
Q  93 cctcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtag 182  Q
    ||||||||||||||||||| |||||  |||||||| | |||| || | ||||||| ||| ||| |||||||||||| || ||||||||||    
T  37940369 cctcaacttcagtaaccacgggttcttcttttactatctctgcagtcgcaacttcggtaaccatgggttcttctttcactgtttctgtag 37940458  T

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Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 37939654 - 37939764
Alignment:
Q  95 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 194  Q
    ||||||||||||||||||||||   ||||||||| ||||||  | |||||||||||| ||| |||   ||||||||| |||| ||||  || |||||| |    
T  37939654 tcaacttcagtaaccacaggtttgacttttactgattctgtcagatcaacttcagtaaccagggg---ttcttttactgtttttgtaatttcaacttctg 37939750  T
Q  195 tagccacaggttct 208  Q
    ||||||||| ||||    
T  37939751 tagccacagcttct 37939764  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 37939786 - 37939899
Alignment:
Q  95 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 194  Q
    |||||||||||||| | ||||||  ||||||| |||||||| | ||| | |||||||||  | ||||| ||||||||| |||||||||  | |||| |||    
T  37939786 tcaacttcagtaactataggttcgtcttttaccgtttctgttgcctcgaattcagtagctgcaggttcatcttttaccatttctgtaggctcaactacag 37939885  T
Q  195 tagccacaggttct 208  Q
    | | ||||||||||    
T  37939886 ttgtcacaggttct 37939899  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 196
Target Start/End: Original strand, 37939699 - 37939797
Alignment:
Q  95 tcaacttcagtaaccacaggttcaccttttactgtttctgtaggctcaacttcagtagccacgggttcttcttttaccgtttctgtagcttgaacttcag 194  Q
    ||||||||||||||||  |||||   ||||||||||| ||||   |||||||| |||||||| | |||||||||||| || |||||||  | ||||||||    
T  37939699 tcaacttcagtaaccaggggttc---ttttactgtttttgtaatttcaacttctgtagccacagcttcttcttttactgtctctgtaggatcaacttcag 37939795  T

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