View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_163 (Length: 216)
Name: NF18178_low_163
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_163 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 3900574 - 3900413
Alignment:
| Q |
1 |
aggagagaacaaccgaaacaaaagaagtaatatatatatagaggtaaccaaacataacaacccatgaagagaaaatctatcaaatataaaaatcaatagg |
100 |
Q |
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| T |
3900574 |
aggagagaacaaccgaaacaaaagaagtaatatatatatagaggtaaccaaacataacaacccataaagagaaaaactatcaaatataaaaatcaatagg |
3900475 |
T |
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| Q |
101 |
aagtcgatcgataaaatataagaaccaatatggagagcagcaatcaaacaaacagtagaact |
162 |
Q |
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| T |
3900474 |
aagtcgatcgataaaatataagaaccaatatggagagcagcaatcaaacaaacagtagaact |
3900413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 3900208 - 3900171
Alignment:
| Q |
159 |
aactttggctgccccaccaatcacaccactatcaatta |
196 |
Q |
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| T |
3900208 |
aactttggctgccccaccaatgacaccactatcaatta |
3900171 |
T |
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