View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_165 (Length: 208)
Name: NF18178_low_165
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_165 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 24898809 - 24898624
Alignment:
| Q |
1 |
agttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgtgtatgattcaagtagctgaaaaattatttggactttgaaat |
100 |
Q |
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| T |
24898809 |
agttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgtgtatgattcaagtagctgaaaaattgtttggacgttgaaat |
24898710 |
T |
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| Q |
101 |
gttttagttttttgatggagagttgagaaaaagaatgaatgaatgaatatgagagaagggtggtggtattgttgttatttatagtgtatc |
190 |
Q |
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| T |
24898709 |
gcttttgctttttggtggagagttgagaaaaagaatgaat----gaatatgagagaagggtggtggtattgttgttatttatagtgtatc |
24898624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 24891158 - 24891344
Alignment:
| Q |
1 |
agttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgtgtatgattcaagtagctgaaaaattatttggactttgaaat |
100 |
Q |
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| T |
24891158 |
agttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgtgtatgattcaagtagctgaaaaattgtttggactttgaaat |
24891257 |
T |
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| Q |
101 |
gttttagttttttgatggagagttgagaaaaagaatgaatgaatgaatatgagagaagggtggtggtattgttgttatttatagtgtatctgtg |
194 |
Q |
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| T |
24891258 |
gttattgctttttggtggagagttgagaaaaa----gaatgaatgaatatgagagaagggtggtggta---ttgttatttatagtgtatctgtg |
24891344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 24906268 - 24906139
Alignment:
| Q |
1 |
agttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgtgtatgattcaagtagctgaaaaattatttggactttgaaat |
100 |
Q |
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| T |
24906268 |
agttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgtgtatgattcaagtagctgaaaaattgtttggactttgaaat |
24906169 |
T |
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| Q |
101 |
gttttagttttttgatggagagttgagaaa |
130 |
Q |
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| T |
24906168 |
gttattgctttttggtggagagttgagaaa |
24906139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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