View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_low_166 (Length: 206)
Name: NF18178_low_166
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_166 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 51000790 - 51000977
Alignment:
| Q |
5 |
ggataaaatagcaattaacaacgtaagaaccatgctgaatattctttgtaaaaatt-caatgatataaa-cccttgatcctaaacacgggattacaaaaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51000790 |
ggataaaatagcaattaacaacgtaagaaccatgctgaatattctttgtaaaaattacaatgatataaaacccttgatcctaaacacgggattacaaaaa |
51000889 |
T |
|
| Q |
103 |
ctcactcatcaagcatccgataaactctcctccgaaagtttgcattgtcctcaccacgagcatagaagcaatgcaagactggaacact |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
51000890 |
ctcactcatcaagcatccgataaactctcctccgaaagtttgcattgtcctcaccacgagcatagaagcaatgcaagactgcaacact |
51000977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University