View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_17 (Length: 570)
Name: NF18178_low_17
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 206 - 555
Target Start/End: Original strand, 45554110 - 45554459
Alignment:
| Q |
206 |
gataatagggtcattcgatagaagtagcaaagatgcgaataagatgtttgaaacgcgaagtagtttcaatcctcctaatcaattggcggcaaaggcaccg |
305 |
Q |
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| T |
45554110 |
gataatagggtcattcgatagaagtagcaaagatgcgaataagatgtttgaaacgcgaagtagtttcaatcctcctaatcaattggcggcaaaggcaccg |
45554209 |
T |
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| Q |
306 |
gcagattcgaagcttcagtcctcatcctcatcctcatcgtgtttctgattctgatgcagcagcaacacagcttgcccgttaccatatctcacgcaatgaa |
405 |
Q |
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| T |
45554210 |
gcagattcgaagcttcagtcctcatcctcatcctcatcgtgtttctgattctgatgcagcagcaacacagcttgcccgttaccatatctcacgtaatgaa |
45554309 |
T |
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| Q |
406 |
atccaactcgcccgtcacgtgttcgaccaaattccaaagccaagtgttgttttgtggaacatgatgatccgaacttatgcttggtctggcccttttcaac |
505 |
Q |
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| T |
45554310 |
atccaactcgcccgtcacgtgttcgaccaaattccaaagccaagtgttgttttgtggaacatgatgatccgaacttatgcttggtctggcccttttcaac |
45554409 |
T |
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| Q |
506 |
aatccatttatttgtaccttcacatgttacagctaggcgtcacacccacc |
555 |
Q |
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| T |
45554410 |
aatccatttatttgtaccttcacatgttacagctaggcgtcacacccacc |
45554459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 45553905 - 45553953
Alignment:
| Q |
8 |
ccaagaatataactttattagaggaaagtttgtttaagagtataattag |
56 |
Q |
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| T |
45553905 |
ccaacaatataactttattagaggaaaatttgtttaagagtataattag |
45553953 |
T |
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