View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_low_18 (Length: 559)

Name: NF18178_low_18
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_low_18
NF18178_low_18
[»] chr6 (14 HSPs)
chr6 (460-528)||(26890870-26890938)
chr6 (4-77)||(26641885-26641958)
chr6 (4-77)||(26747851-26747924)
chr6 (435-520)||(26641231-26641316)
chr6 (435-520)||(26747197-26747282)
chr6 (477-528)||(27651844-27651895)
chr6 (4-77)||(27649481-27649554)
chr6 (471-528)||(27713769-27713826)
chr6 (406-485)||(26966479-26966559)
chr6 (408-490)||(26631875-26631958)
chr6 (408-490)||(26737850-26737933)
chr6 (406-444)||(26651403-26651441)
chr6 (406-444)||(26757371-26757409)
chr6 (411-469)||(26854111-26854169)
[»] chr8 (2 HSPs)
chr8 (1-77)||(29268909-29268985)
chr8 (471-528)||(29269635-29269692)
[»] chr4 (3 HSPs)
chr4 (451-524)||(18682696-18682769)
chr4 (464-508)||(18692037-18692081)
chr4 (492-524)||(18650319-18650351)
[»] scaffold0349 (1 HSPs)
scaffold0349 (471-528)||(18118-18175)


Alignment Details
Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 460 - 528
Target Start/End: Complemental strand, 26890938 - 26890870
Alignment:
Q  460 agagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaaatta 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26890938 agagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaatta 26890870  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 26641958 - 26641885
Alignment:
Q  4 aattgtgaataacatgaacagattgtgaataaagaaaatatattgcctaacccatagaatcagatcatggtaat 77  Q
    ||||||||||||||||||||| |||||||||||| |||| || ||||||||||| |||||||||||||||||||    
T  26641958 aattgtgaataacatgaacaggttgtgaataaagcaaatttactgcctaacccaaagaatcagatcatggtaat 26641885  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 26747924 - 26747851
Alignment:
Q  4 aattgtgaataacatgaacagattgtgaataaagaaaatatattgcctaacccatagaatcagatcatggtaat 77  Q
    ||||||||||||||||||||| |||||||||||| |||| || ||||||||||| |||||||||||||||||||    
T  26747924 aattgtgaataacatgaacaggttgtgaataaagcaaatttactgcctaacccaaagaatcagatcatggtaat 26747851  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 435 - 520
Target Start/End: Complemental strand, 26641316 - 26641231
Alignment:
Q  435 gaaatggaagctctcgtcattgaacagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaa 520  Q
    |||||||||| || | ||||||||| |||||||||||||||||||||||| ||||||| |||||| |||| ||||||||| |||||    
T  26641316 gaaatggaagttcacatcattgaactgagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaa 26641231  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 435 - 520
Target Start/End: Complemental strand, 26747282 - 26747197
Alignment:
Q  435 gaaatggaagctctcgtcattgaacagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaa 520  Q
    |||||||||| || | ||||||||| |||||||||||||||||||||||| ||||||| |||||| |||| ||||||||| |||||    
T  26747282 gaaatggaagttcacatcattgaactgagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaa 26747197  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 477 - 528
Target Start/End: Original strand, 27651844 - 27651895
Alignment:
Q  477 atctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaaatta 528  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  27651844 atctgtcagtatcgcaatatgtacaaactcttgtattcgtaaaagcaaatta 27651895  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 27649481 - 27649554
Alignment:
Q  4 aattgtgaataacatgaacagattgtgaataaagaaaatatattgcctaacccatagaatcagatcatggtaat 77  Q
    |||||||||||||| ||||||||| ||||||||| |||| || ||||||||  |||||||||||| ||||||||    
T  27649481 aattgtgaataacaggaacagattatgaataaagcaaatttactgcctaacatatagaatcagataatggtaat 27649554  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 471 - 528
Target Start/End: Original strand, 27713769 - 27713826
Alignment:
Q  471 tgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaaatta 528  Q
    |||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  27713769 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaatta 27713826  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 485
Target Start/End: Complemental strand, 26966559 - 26966479
Alignment:
Q  406 tgtaattaataatcaaacacttcattggagaaatggaagctctcgtcattgaacagaga-ttgtgatgaaccatctgtcag 485  Q
    |||||||||||||||||||||  ||| |||||||||||| || | ||||| || ||||| ||| ||||| |||||||||||    
T  26966559 tgtaattaataatcaaacactatatttgagaaatggaagttcacatcattaaatagagatttgagatgagccatctgtcag 26966479  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 490
Target Start/End: Complemental strand, 26631958 - 26631875
Alignment:
Q  408 taattaataatcaaacacttcattggagaaatggaagctctcgtcattgaacagaga-ttgtgatgaaccatctgtcagtatca 490  Q
    |||||||||||||||||||| ||| |||||||||||| |  | |||||||| ||||| |||  || ||||||||||||| ||||    
T  26631958 taattaataatcaaacactttatttgagaaatggaagttaacatcattgaatagagatttgacattaaccatctgtcagaatca 26631875  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 490
Target Start/End: Complemental strand, 26737933 - 26737850
Alignment:
Q  408 taattaataatcaaacacttcattggagaaatggaagctctcgtcattgaacagaga-ttgtgatgaaccatctgtcagtatca 490  Q
    |||||||||||||||||||| ||| |||||||||||| |  | |||||||| ||||| |||  || ||||||||||||| ||||    
T  26737933 taattaataatcaaacactttatttgagaaatggaagttaacatcattgaatagagatttgacattaaccatctgtcagaatca 26737850  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 444
Target Start/End: Complemental strand, 26651441 - 26651403
Alignment:
Q  406 tgtaattaataatcaaacacttcattggagaaatggaag 444  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  26651441 tgtaattaataatcaaacactttatttgagaaatggaag 26651403  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 444
Target Start/End: Complemental strand, 26757409 - 26757371
Alignment:
Q  406 tgtaattaataatcaaacacttcattggagaaatggaag 444  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  26757409 tgtaattaataatcaaacactttatttgagaaatggaag 26757371  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 469
Target Start/End: Complemental strand, 26854169 - 26854111
Alignment:
Q  411 ttaataatcaaacacttcattggagaaatggaagctctcgtcattgaacagagattgtg 469  Q
    |||||||| || ||||| ||| |||||||||||  || |||||||||||||||||||||    
T  26854169 ttaataattaatcactttatttgagaaatggaatatcacgtcattgaacagagattgtg 26854111  T

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Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 29268909 - 29268985
Alignment:
Q  1 tccaattgtgaataacatgaacagattgtgaataaagaaaatatattgcctaacccatagaatcagatcatggtaat 77  Q
    |||||| |||||||||| ||||||||||||||||||  |||| || |||| ||||||||||||||||||||||||||    
T  29268909 tccaatcgtgaataacaggaacagattgtgaataaatcaaatttactgccaaacccatagaatcagatcatggtaat 29268985  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 471 - 528
Target Start/End: Original strand, 29269635 - 29269692
Alignment:
Q  471 tgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaaatta 528  Q
    |||| |||| ||| |||||||||||| |||| ||||||||||| ||||||||||||||    
T  29269635 tgaaacatcagtcggtatcacaatatctacatactcttgtattattaaaagcaaatta 29269692  T

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Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 451 - 524
Target Start/End: Original strand, 18682696 - 18682769
Alignment:
Q  451 tcattgaacagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaa 524  Q
    |||||| ||||||||||||| ||||||||| || |||| | |||||||||| ||||||||||||||||||||||    
T  18682696 tcattgtacagagattgtgacgaaccatctatcggtatgaaaatatgtacatactcttgtattcttaaaagcaa 18682769  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 508
Target Start/End: Original strand, 18692037 - 18692081
Alignment:
Q  464 attgtgatgaaccatctgtcagtatcacaatatgtacaaactctt 508  Q
    |||||||||||||||||||| |||| | |||||||||||||||||    
T  18692037 attgtgatgaaccatctgtcggtatgaaaatatgtacaaactctt 18692081  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 524
Target Start/End: Original strand, 18650319 - 18650351
Alignment:
Q  492 aatatgtacaaactcttgtattcttaaaagcaa 524  Q
    |||||||||| ||||||||||||||||||||||    
T  18650319 aatatgtacatactcttgtattcttaaaagcaa 18650351  T

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Target: scaffold0349 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 471 - 528
Target Start/End: Complemental strand, 18175 - 18118
Alignment:
Q  471 tgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaaatta 528  Q
    |||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  18175 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaatta 18118  T

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