View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_low_21 (Length: 539)
Name: NF18178_low_21
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 8 - 525
Target Start/End: Complemental strand, 2833603 - 2833094
Alignment:
| Q |
8 |
gagatgaaaatgattaagagcttatttgaaacgtgagttttgtgatgtgaagtgaagatgtttcgttcttcaaaatggagaagtgagaagaataggatta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2833603 |
gagatgaaaatgattaagagcttatttgaaacgtgagttttgtgatgtgaagtgaagatgtttcgttcttcaaaatggagaagtgagaagaataggatta |
2833504 |
T |
|
| Q |
108 |
aagctgtttttaagcttcaattcaatgctactaaggtaggttcatctcagaatttttgtatattcattttctttactttcatatttctcagaatgaataa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2833503 |
aagctgtttttaagcttcaattcaatgctactaaggtaggttcatctcagaatttttgtatattcattttctttactttcatatttctcagaatgaataa |
2833404 |
T |
|
| Q |
208 |
tctaatgtattggttctgttaggttctgagggttttgataatcttttatgatcaaatttgatctgattaaatt--aagacagttgtaaataagtcattag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
2833403 |
tctaatgtattggttctgttaggttctgagggttttgataatcttttatgatcaaatttgatctgattaaattaaaaaacagttgtaaataagtcattag |
2833304 |
T |
|
| Q |
306 |
tgctacctttattaataatagnnnnnnnnctcctagatttcaattataatataaagtgaaaaaagtaacatttcttaacctatcatatttcaattttctg |
405 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2833303 |
tgctacctttattaataatagttttttttctcctagatttcaattataatataaagtgaaaaaagtaacatttcttaacctatcata-------tttctg |
2833211 |
T |
|
| Q |
406 |
ggaaatgaaaatggattttgttaatagtgtgaattatgatgatcannnnnnnnnnnnnattcttaaccgtattaggttggaaattattaaattaacataa |
505 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2833210 |
ggaaatgaaaatggattttg-taatagtgtgaattatgatgatca--tatttttttttattcttaaccgtattaggttggaaattattaaattaacataa |
2833114 |
T |
|
| Q |
506 |
catgattggatgagaaattg |
525 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2833113 |
catgattggatgagaaattg |
2833094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University