View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_22 (Length: 536)
Name: NF18178_low_22
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 51 - 218
Target Start/End: Original strand, 39693304 - 39693459
Alignment:
| Q |
51 |
gtgagcaaagtgtgactcatacgaaataacattgctcttagtttttaattcaacttttacttcacttcagaaagcatta-tttcttttata--aatcaaa |
147 |
Q |
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| T |
39693304 |
gtgagcaaagtgtgactcatacgaaataacattgctcttattttttaattcaactttt-----actgaagaaagcattattttcttctatatgaatcaaa |
39693398 |
T |
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| Q |
148 |
tactgactacctagcagaaaatatagagaaagtagaaataataatacttgcacaagtcacgggttgcattg |
218 |
Q |
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| T |
39693399 |
-------tacctaacagaaaatatacagaaagtaga---aataacacatgcacaagtcacgggttgcattg |
39693459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 39693501 - 39693575
Alignment:
| Q |
226 |
aacaattatttccgaagaaataaacacgtaacaccatatttagtagtaaatggcgcaatcaaacttccaccattgcat |
303 |
Q |
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| T |
39693501 |
aacaattatgtccaaagaaatatacacgtaacaccatatttagt---aaatggcgcaatcaaacttccaccattgcat |
39693575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 487
Target Start/End: Complemental strand, 22441538 - 22441490
Alignment:
| Q |
439 |
catcttgatgacatagaaaataattacaaattaatttcaaaatttatag |
487 |
Q |
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| T |
22441538 |
catctcgatgacataggaaataattatagattaatgtcaaaatttatag |
22441490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 47555331 - 47555371
Alignment:
| Q |
12 |
taagtaatcacagtatgtactctttatagcgagtaattagt |
52 |
Q |
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| T |
47555331 |
taagtaatcacaatatgtactctttataccaagtaattagt |
47555371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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