View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_24 (Length: 528)
Name: NF18178_low_24
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 5e-79; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 241 - 435
Target Start/End: Complemental strand, 11080599 - 11080409
Alignment:
| Q |
241 |
ctagggttaactcgactagagtaaatcgtcattttcatctcttgtcaaatgtggcggagtcatgtgtgcaactcacgtaacaaattggaggacacacaaa |
340 |
Q |
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| T |
11080599 |
ctagggttaactcgactagagtaaatcgtcattttcatctcttgtcaaatgtagcggagtcatatgtgcaact----taacaaattggaggacacacaaa |
11080504 |
T |
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| Q |
341 |
cattttcaacgcatgattaacattttgaacataatttatagagttcttaataatttaaaataatttaggaactagtttgacaacatgtgacacta |
435 |
Q |
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| T |
11080503 |
cattttcaacgcatgattaacattttgaacataatttagagaattctcaataatttaaaataatttaggaactaatttgacaacatatgacacta |
11080409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 11080790 - 11080588
Alignment:
| Q |
9 |
aggaacacagaccaaatacacaataacacatgaaaagtagcttttcatgaagattctagatgatatacagtccaaaggttgtagatttacatcatgagaa |
108 |
Q |
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| T |
11080790 |
aggaacgcagaccaaatacacaataacacatgaaaagtagcttttcatgaagattctagatgatatac-gtccaaaggttgtagatttacatcatgagaa |
11080692 |
T |
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| Q |
109 |
ggattgagtaaaccaacaataccaacataaagtagtaacaaaattgggaaaagtatatgaaaaattaaatctaaaatcac-attattttatttagctacc |
207 |
Q |
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| T |
11080691 |
ggatttagtaaac------------cataaagtagtaacaaaaatgggaaaagaatatgaaaaattaaatctaaaatcactttttttttttttagctacc |
11080604 |
T |
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| Q |
208 |
aaaactagggttaact |
223 |
Q |
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| T |
11080603 |
aaaactagggttaact |
11080588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 435 - 511
Target Start/End: Complemental strand, 11080375 - 11080299
Alignment:
| Q |
435 |
aaattcattgattcaaactcaatttcatcaacaacataaccaaatacacactaaatttgtgcttataaattcacttt |
511 |
Q |
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| T |
11080375 |
aaattcattgattcaaactcaatttcatcaacaacataaccaaatactcactaaatttgtgcttataaattcacttt |
11080299 |
T |
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