View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_low_25 (Length: 505)
Name: NF18178_low_25
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 50 - 499
Target Start/End: Complemental strand, 39018038 - 39017587
Alignment:
| Q |
50 |
gtaattcgagagctacctactgaacctttttggggggtctggaaacattggggggtcataaaagcaatttttctgtaaagtaagcaatgaccaggctagg |
149 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39018038 |
gtaattcgagagctacctaccgaacctttttggggggtctggaaacattggggggccataaaagcaatttttctgtaaggtaagcaatgaccaggctagg |
39017939 |
T |
|
| Q |
150 |
cccaacttcattcatggactctagcactaggcactaagaacccaacatgttgcatttttcaatcaggaacaaaacatgtagctgatcc--aagttctcac |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||| |
|
|
| T |
39017938 |
cccaacttcattcatggactctagcactaggcactaagaacccaacatgttgcatttttcaatcaggaaaaaaacatgtagctgatcctcaagttttcac |
39017839 |
T |
|
| Q |
248 |
agcagacaaaataagacaataataatgtattattgaattttagttttttgtatataaatgaagtgataagaaaccaaagaataggaggtggaaatctcac |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39017838 |
agcagacaaaataagacaataataatgtattattgaattttagttttttgtatataaatgaagtgataagaaaccaaagaataggaggtggaaatctcac |
39017739 |
T |
|
| Q |
348 |
cccatgagtctacttagataagaaaagaatctagaaatcaaaatattattggtcctcatttctcctacgtggctttcccatctatattctaaactatagt |
447 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39017738 |
cccatgagtctatttagataagaaaagaatctagaaatcaaaatattattggtcctcatttctcctacgtggctttcccatctatattctaaactatagt |
39017639 |
T |
|
| Q |
448 |
cttcattcttcaatagcaaagaccaaattcactcttactcttgagaattatc |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39017638 |
cttcattcttcaatagcaaagaccaaattcactcttactcttgagaattatc |
39017587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 33829933 - 33829984
Alignment:
| Q |
294 |
tttgtatataaa-tgaagtgataagaaaccaaagaataggaggtggaaatct |
344 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
33829933 |
tttgtatataaactgaagtgataagaaagcaaagaataggagttggaaatct |
33829984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University