View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_26 (Length: 501)
Name: NF18178_low_26
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 16 - 494
Target Start/End: Original strand, 3911963 - 3912441
Alignment:
| Q |
16 |
cacttctatcatcaagtgataatgctcattccaaaactgcttcaaatcttagtcacatggctcaatgggaaagtgctagacttgaagctgaagctagact |
115 |
Q |
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| T |
3911963 |
cacttctttcatcaagtgataatgctcattccaaaactgcttcaaatcttagtcacatggctcaatgggaaagtgctagacttgaagctgaagctagact |
3912062 |
T |
|
| Q |
116 |
tgttagagagtccaaaattcgttcacataattcacttcttcatcataatcacttgaaagcttggagtattaatcttgagtctcctacttcaactttatct |
215 |
Q |
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| T |
3912063 |
tgttagagagtccaaaattcgttcacataattcacttcttcatcataatcacttgaaagcttggaatattaatcttgagtctcctacttcaactttatct |
3912162 |
T |
|
| Q |
216 |
ttcaatgagaatgttgcaccaattatgaatagtggagaaattggaggtgaaaatagtaataccattaacaatggtaatgagaaaaataataataatgatg |
315 |
Q |
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| T |
3912163 |
ttcaatgagaatgttgcaccaattatgaatagtggagaaattggaggtgaaaatagtaatactattaacaatggtaatgagaaaaataataatgatgatg |
3912262 |
T |
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| Q |
316 |
acaacaatgttgtgtctatgattgaatttgttgggactaattcaagttcaattgtgaaagaagaaggtggtgatgatcaagatcaagatcaatggaaagg |
415 |
Q |
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| T |
3912263 |
acaacaatgttgtgtctatgattgaatttgttgggactaattcaagttcaattgtgaaagaagaaggtggtgatgatcaagatcaagatcaatggaaagg |
3912362 |
T |
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| Q |
416 |
ttatgaaagttcattgacttttacatcaaatcttcatcatgagttgactatgtcaatggatcaaagtgttgatgatgtc |
494 |
Q |
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| T |
3912363 |
ttatgaaagttcattgacttttacatcaaatcttcatcatgagttgactatgtcaatggatcaaagtgttgatgatgtc |
3912441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 2950240 - 2950323
Alignment:
| Q |
41 |
tcattccaaaactgcttcaaatcttagtcacatggctcaatgggaaagtgctagacttgaagctgaagctagacttgttagaga |
124 |
Q |
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| T |
2950240 |
tcattccaagaatgttgcaaatcttagccacaaggctcaatgggagagtgcaagacttgaagctgaagcaagattggttagaga |
2950323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 28944780 - 28944732
Alignment:
| Q |
67 |
gtcacatggctcaatgggaaagtgctagacttgaagctgaagctagact |
115 |
Q |
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| T |
28944780 |
gtcacatggctcaatgggagagtgcaaggcttgaagcagaagcaagact |
28944732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 11747584 - 11747624
Alignment:
| Q |
69 |
cacatggctcaatgggaaagtgctagacttgaagctgaagc |
109 |
Q |
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| T |
11747584 |
cacatggctcaatgggaaagtgcaagacttgaagcagaagc |
11747624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 31942078 - 31942136
Alignment:
| Q |
66 |
agtcacatggctcaatgggaaagtgctagacttgaagctgaagctagacttgttagaga |
124 |
Q |
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| T |
31942078 |
agtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagacttgttagaga |
31942136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 32001037 - 32001095
Alignment:
| Q |
66 |
agtcacatggctcaatgggaaagtgctagacttgaagctgaagctagacttgttagaga |
124 |
Q |
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| T |
32001037 |
agtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagacttgttagaga |
32001095 |
T |
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