View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_27 (Length: 500)
Name: NF18178_low_27
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 17 - 486
Target Start/End: Original strand, 41705368 - 41705837
Alignment:
| Q |
17 |
aaaaaggcatagctaaaatgaaaacaatgtctcctagttgattcaataatcattttgcatggataattaagagaagaaaactgttatgcattgatatgaa |
116 |
Q |
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| T |
41705368 |
aaaaaggcatagctaaaatgaaaacaatgtctcctagttgattcaataatcattttgcatggataattaagagaagaaaactgttatgcattgatatgaa |
41705467 |
T |
|
| Q |
117 |
tgcaatcaaagaaataaaaaggctatgcatagctactgaaatggaataaagtggctccaagaatctacaatatggaataccataaaaatataaagatcta |
216 |
Q |
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| T |
41705468 |
tgcaatcaaagaaataaaaaggctatgcatagctactgaaatggaataaagtggctccaagaatctacaatatggaataccataaaaatataaagatcta |
41705567 |
T |
|
| Q |
217 |
tgggaccaattgatactagatgtatatgttcctataaatggcttttataaatatactctcttttgtaagatgcaaagagaaacgactttggaacttgcta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705568 |
tgggaccaattgatactagatgtatatgttcctataaatggcttttataaatatacgctcttttgtaagatgcaaagagaaacgactttggaacttgcta |
41705667 |
T |
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| Q |
317 |
aactttgcagagtttttcttcctttcatttaagtcaagtagcacatatatataaagagcatatcatagtggataaattacttattaaaatatacaaaatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705668 |
aactttgcagagtttttcttcctttcatttaagtcaagtagcacatatatataaagagcatatcatagtggataaattacttattaaaatatacaaaatg |
41705767 |
T |
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| Q |
417 |
cttgaaaactaaaccattgtaattgttgcactatcggtaattgaagagccaatcccaacgttcgcctatg |
486 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41705768 |
cttgaaaactagaccattgtaattgttgcactatcggtaattgaatagccaatcccaacgttcgcctatg |
41705837 |
T |
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