View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_28 (Length: 493)
Name: NF18178_low_28
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Original strand, 46681153 - 46681614
Alignment:
| Q |
18 |
ctttcaacatggtgttatgctattacatatagtttcatgctgctaccttttctttactttcctgctaatacttatagtttgaaattcatacattcaaaag |
117 |
Q |
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| T |
46681153 |
ctttcaatatggtgttatgctattacatatagtttcatgctgctaccttttctttactttcctgctaatacgtatagtttgaaattcatacattcaaaag |
46681252 |
T |
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| Q |
118 |
ggttccctgcttcatctaatctaatttaatattttctcaaatcaaactacctccaaacaaacgatacaaactagctatctactaacagtaactttgaatt |
217 |
Q |
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| T |
46681253 |
ggttccctgcttcatctaatctaatttaatattttctcaaatcaaactacctccaaacaaacgatacaaactagctatctactaacagtaactttgaatt |
46681352 |
T |
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| Q |
218 |
gcaattataacacacattcatataaatatgcagaagggtcaatttatgatataaccacatcaacatatgcatttgtaacaggatgtgaatggattaagca |
317 |
Q |
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| T |
46681353 |
gtaattataacacacattcatataaatatgcagaagggttaatttatgatataaccacatcaacatatgcatttgtaacaggatgtgaatggattaagca |
46681452 |
T |
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| Q |
318 |
ttcataatggacnnnnnnnnnncagaggaagaagataaagatgcaattagacgtaagatagtatatatgaaaactggtaaataatctatgaacatgcatg |
417 |
Q |
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| T |
46681453 |
ttcataatgtccaaaaaaaaaacagaggaagaagataaagatgcaattagatgtaagatagtatatatgaaaactgataaataatctatgaacatgcatg |
46681552 |
T |
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| Q |
418 |
agaagttatacacaaaattcattgtaactcaaatagatttgattttccaacctcttcatctc |
479 |
Q |
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| T |
46681553 |
agaagttatacacaaaattcattgtaactcaaatagatttgattttccaacctcttcatctc |
46681614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 41 - 200
Target Start/End: Original strand, 46696389 - 46696548
Alignment:
| Q |
41 |
tacatatagtttcatgctgctaccttttctttactttcctgctaatacttatagtttgaaattcatacattcaaaagggttccctgcttcatctaatcta |
140 |
Q |
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| T |
46696389 |
tacatatagtttcatgctgctaccttttctttactttcctgctactaagtatagtttgaaattcatacattcagaagggttccccgcttcatctaatcta |
46696488 |
T |
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| Q |
141 |
atttaatattttctcaaatcaaactacctccaaacaaacgatacaaactagctatctact |
200 |
Q |
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| T |
46696489 |
atttaatattttctcaaatcaaactacctccaaacaaacgatacaagctagctatctact |
46696548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 478
Target Start/End: Original strand, 46687817 - 46687923
Alignment:
| Q |
372 |
aagatagtatatatgaaaactggtaaataatctatgaacatgcatgagaagttatacacaaaattcattgtaactcaaatagatttgattttccaacctc |
471 |
Q |
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| T |
46687817 |
aagataatatgtatgataactgatatataatttacaaacatgcatgataagttatgcacaaaattgactgtaactcaaatagatttgattttctgacctc |
46687916 |
T |
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| Q |
472 |
ttcatct |
478 |
Q |
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|||||| |
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| T |
46687917 |
atcatct |
46687923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 464
Target Start/End: Original strand, 46704741 - 46704832
Alignment:
| Q |
376 |
tagtatatatgaaaactggtaaataatctatgaa---catgcatgagaagttatacacaaaattcattgtaactcaaatagatttgattttc |
464 |
Q |
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| T |
46704741 |
tagtatgtgtgataactgataaataatctataaaaaacatgcatgataagctatacacaaaatttactgtaactcaagtagatttgattttc |
46704832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 46686368 - 46686431
Alignment:
| Q |
211 |
ttgaattgcaattataacacacat--tcatataaatatgcagaagggtcaatttatgatataac |
272 |
Q |
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| T |
46686368 |
ttgaattgcaattctaacacatatggtcatagaaatatgcagaaggatcaatatataatataac |
46686431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 29533362 - 29533206
Alignment:
| Q |
41 |
tacatatagtttcatgctgctaccttttctttactttcctgctaatacttatagtttgaaattcatacattcaaaagggttccctgcttcatctaatcta |
140 |
Q |
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| T |
29533362 |
tacatatggttttttgctactcccttttaattactatcatgctactacatatagtttgcaatttaca-attcaaaagggtacccaacttcatctgatcta |
29533264 |
T |
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| Q |
141 |
atttaatatttt-ctcaaatcaaactacctccaaacaaacgatacaaactagctatct |
197 |
Q |
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| T |
29533263 |
gtttaatttttttcttgaattgaactacttccaaacaaacgatacaagctagccatct |
29533206 |
T |
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