View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_low_3 (Length: 1122)
Name: NF18178_low_3
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_3 |
 | |
|
| [»] scaffold0468 (1 HSPs) |
| | |
|
| [»] scaffold0729 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 923; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 923; E-Value: 0
Query Start/End: Original strand, 1 - 944
Target Start/End: Original strand, 15801286 - 15802229
Alignment:
| Q |
1 |
agtacacgcgagcaattaaatgcattatgtggaaatcgaaatgggattggtccaggaagcataataatcatcacaacaagagatgcacgtctacttgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801286 |
agtacacgcgagcaattaaatgcattatgtggaaatcgaaatgggattggtccaggaagcataataatcatcacaacaagagatgcacgtctacttgaca |
15801385 |
T |
|
| Q |
101 |
tccttggagttgattttatttatgaagcggagggattgaatgtgcacgaatctcgtaggcttttcaactggcatgcgtttaaggaggcgaatccaagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801386 |
tccttggagttgattttatttatgaagcggagggattgaatgtgcacgaatctcgtaggcttttcaactggcatgcgtttaaggaggcgaatccaagtga |
15801485 |
T |
|
| Q |
201 |
agctttcctcatactctccggagatgtagtttcctattgtggtggactaccactagctcttgaagtccttggatcttacttattcaataggagaaaacga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801486 |
agctttcctcatactctccggagatgtagtttcctattgtggtggactaccactagctcttgaagtccttggatcttacttattcaataggagaaaacga |
15801585 |
T |
|
| Q |
301 |
gagtggcagagtgtaatatccaagctacaaaagatacccaatgatcaaatacacgagaaactaaaaataagctttgatggtttagaggatcatatggaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801586 |
gagtggcagagtgtaatatccaagctacaaaagatacccaatgatcaaatacacgagaaactaaaaataagctttgatggtttagaggatcatatggaaa |
15801685 |
T |
|
| Q |
401 |
agaatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801686 |
agaatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaat |
15801785 |
T |
|
| Q |
501 |
agaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801786 |
agaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaa |
15801885 |
T |
|
| Q |
601 |
agttcacctgaggagcctgagaaacgtactcgattgtggtgttttgaagatgtagttgatgtactggccgaacaaaccgtaagaattctacattgcattt |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801886 |
agttcacctgaggagcctgagaaacgtactcgattgtggtgttttgaagatgtagttgatgtactggccgaacaaaccgtaagaattctacattgcattt |
15801985 |
T |
|
| Q |
701 |
tgaatttttgtcatccttcacgatctttgaagataaaaataaaactatgtttcagaaatgnnnnnnnacttttcccatctattggctgaaaattgtggga |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15801986 |
tgaatttttgtcatccttcacgatctttgaagataaaaataaaactatgtttcagaaatgtttttttacttttcccatctattggctgaaaattgtggga |
15802085 |
T |
|
| Q |
801 |
ttcatcatctcacaagtgtttgtccaaagtttttggagaagttagttcatgagaaaaatgtcattttatatatgattgggtaagggtttaagcagaaatt |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15802086 |
ttcatcatctcacaagtgtttgtccaaagtttttggagaagttagttcatgagaaaaatgtcattttatatatgattgggtaagggtttaagcagaaatt |
15802185 |
T |
|
| Q |
901 |
ttatgtgttgctttttagttaccaaatagcaagttaaggattcc |
944 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15802186 |
ttatgtgttgctttttagttaccaaatagcaagttaaggattcc |
15802229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 71 - 687
Target Start/End: Original strand, 12596104 - 12596727
Alignment:
| Q |
71 |
tcacaacaagagatgcacgtctacttgacatccttggagttgattttatttatgaagcggagggattgaatgtgcacgaatctcgtaggcttttcaactg |
170 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||| ||||||| ||| || || | || ||| |||| | |
|
|
| T |
12596104 |
tcaccacaagagatgtgcgtctacttgacatccttggagttgactttatatatgaagtggagggtttgaatgcgcatgagtcccttaagctcttcagttt |
12596203 |
T |
|
| Q |
171 |
gcatgcgtttaaggaggcgaatccaagtgaagctttcctcatactctccggagatgtagtttcctattgtggtggactaccactagctcttgaagtcctt |
270 |
Q |
| |
|
||||| |||| |||||| | ||| ||| ||| || ||||| ||||||||||| |||| || | |||||||||||||||||||||||||||| |
|
|
| T |
12596204 |
tcatgcttttagggaggcaaggtcaacaaaagacttcgcaattctctcaagagatgtagttgcctactgcgatggactaccactagctcttgaagtcctt |
12596303 |
T |
|
| Q |
271 |
ggatcttacttattcaataggagaaaacgagagtggcagagtgtaatatccaagctacaaaagatacccaatgatcaaatacacgagaaactaaaaataa |
370 |
Q |
| |
|
|| |||||||| ||||| |||||||||| |||||||||||||||| |||| |||||| ||||||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
12596304 |
gggtcttacttgttcaagaggagaaaacaagagtggcagagtgtattatcaaagctaaaaaagatactcaatgatgaaatacacaagaaactaaaaataa |
12596403 |
T |
|
| Q |
371 |
gctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaa |
470 |
Q |
| |
|
| || || |||||| ||||| |||||||||| |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12596404 |
gtttcgaaggtttaagggatcgtatggaaaaggatatatttcttgatatttgttgtttctttatcggtaaggatagtgcttatgttacagagatactaaa |
12596503 |
T |
|
| Q |
471 |
tgggtgtggacttcatgctgatattggaatagaagtg-------ctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgc |
563 |
Q |
| |
|
|||||||| ||||| || |||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12596504 |
tgggtgtgatcttcaagcggatattggaataacagtgctgatacctgatagagagaagcctcataaaagttgaaaagaataacaagcttggaatgaatgc |
12596603 |
T |
|
| Q |
564 |
tctgctacgagacatgggaagagaaattgttcgtgaaagttcacctgaggagcctgagaaacgtactcgattgtggtgttttgaagatgtagttgatgta |
663 |
Q |
| |
|
| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
12596604 |
tttgctacaagacatgggaagagaaattgttcgcgaaagttcacctgaggagcctgagaagtgtagtcgattgtggtgccatgaagatgtagttgatgta |
12596703 |
T |
|
| Q |
664 |
ctggccgaacaaaccgtaagaatt |
687 |
Q |
| |
|
|| |||| || |||||||||||| |
|
|
| T |
12596704 |
ttgaccgaccataccgtaagaatt |
12596727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 973 - 1112
Target Start/End: Original strand, 15802258 - 15802397
Alignment:
| Q |
973 |
ctatggtctttctttgtgttacagggaacaaaagccatcgagggattggttttgaagttgcaaaggaccagtagagtttgcttcaatacaattgctttta |
1072 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15802258 |
ctatggtctttctttgtgtcacagggaacaaaagccatcgagggattggttttgaagtcgcaaaggaccagtagagtttgcttcaatacaattgctctta |
15802357 |
T |
|
| Q |
1073 |
agaaaatgaagaaattgcgattgttgcaacttgatgatgt |
1112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15802358 |
agaaaatgaagaaattgcgattgttgcaacttgataatgt |
15802397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 398 - 606
Target Start/End: Original strand, 30416632 - 30416840
Alignment:
| Q |
398 |
aaaagaatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattgg |
497 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||| |||| |||||| |
|
|
| T |
30416632 |
aaaaggatatatttcttgacatatgttgtttctttatcggcaaggacagagcttatgttactgagattctaaatggctgtggactttttgctagtattgg |
30416731 |
T |
|
| Q |
498 |
aatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgt |
597 |
Q |
| |
|
|||| || || |||||| | |||||| |||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||| |
|
|
| T |
30416732 |
aatatctgtcctcatagagcggagcctcttaaaagttgaaaagaataacaagcttggaatgcatgatttaataagagacatgggaagagaaattgttcgt |
30416831 |
T |
|
| Q |
598 |
gaaagttca |
606 |
Q |
| |
|
||| |||| |
|
|
| T |
30416832 |
caaaattca |
30416840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 370 - 606
Target Start/End: Original strand, 20837133 - 20837369
Alignment:
| Q |
370 |
agctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaa |
469 |
Q |
| |
|
|||| |||||||||||| ||| ||| | || || | ||||||||||| | ||||||||||| || || ||| | |||||| |||||||||||||||| | |
|
|
| T |
20837133 |
agctatgatggtttagaagattatacgaaacaggacatatttcttgacatatgttgtttcttcattggaaagaacagagctgatgttacagagatactta |
20837232 |
T |
|
| Q |
470 |
atgggtgtggacttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgct |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | || |||||| | |||||| ||||||| ||||||||||||| |||||||||||| | | |||| |
|
|
| T |
20837233 |
atgggtgtggacttcatgctgatattggaatatctattctcatagagcgcagcctcgtaaaagtcgaaaagaataacacgcttggaatgcacgatttgct |
20837332 |
T |
|
| Q |
570 |
acgagacatgggaagagaaattgttcgtgaaagttca |
606 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||| |
|
|
| T |
20837333 |
cagagacatgggaagatcaattgctggtgaaagttca |
20837369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 370 - 606
Target Start/End: Original strand, 20810778 - 20811014
Alignment:
| Q |
370 |
agctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaa |
469 |
Q |
| |
|
|||| |||||||||||| ||| ||| | ||||| | ||||||||||| | ||||||||||| || || ||| | |||||| |||||||||||||||| | |
|
|
| T |
20810778 |
agctatgatggtttagaagattatacgcaaaaggacatatttcttgacatatgttgtttcttcattggaaagaacagagctgatgttacagagatactta |
20810877 |
T |
|
| Q |
470 |
atgggtgtggacttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgct |
569 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| | || |||||| | |||||| ||||||| ||||||||||||| |||||||||||| | | |||| |
|
|
| T |
20810878 |
atgggtgtggacttcatgcttatagtggaatatctattctcatagagcgcagcctcgtaaaagtcgaaaagaataacacgcttggaatgcacgatttgct |
20810977 |
T |
|
| Q |
570 |
acgagacatgggaagagaaattgttcgtgaaagttca |
606 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||| |
|
|
| T |
20810978 |
cagagacatgggaagatcaattgctggtgaaagttca |
20811014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 20)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 13 - 707
Target Start/End: Original strand, 3313164 - 3313861
Alignment:
| Q |
13 |
caattaaatgcattatgtggaaatcgaaatgggattggtccaggaagcataataatcatcacaacaagagatgcacgtctacttgacatccttggagttg |
112 |
Q |
| |
|
||||| ||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
3313164 |
caattcaattcattatgcggaaatcgaaatgggattggtccaggaagtataataatcatcacaacaagagatgtacgtctacttgatatccttggagttg |
3313263 |
T |
|
| Q |
113 |
attttatttatgaagcggagggattgaatgtgcacgaatctcgtaggcttttcaactggcatgcgtttaaggaggcgaatccaagtgaagctttcctcat |
212 |
Q |
| |
|
| ||||| ||||||||||||||||||||| | || || | | |||||||| ||||||||||| |||| | | ||||| |||| |||||| || |
|
|
| T |
3313264 |
actttatatatgaagcggagggattgaattcggttgagtcccttgagcttttcagtcagcatgcgtttagggagacaagtccaatagaaggtttccttat |
3313363 |
T |
|
| Q |
213 |
actctccggagatgtagtttcctattgtggtggactaccactagctcttgaagtccttggatcttacttattcaataggagaaaacgagagtggcagagt |
312 |
Q |
| |
|
|| || || |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
3313364 |
tctttcaagatatgtagttgcctattgtggtggactgccactagctcttgaagtccttggatcttacttgttcaagaggagaaaacaagagtggcagagt |
3313463 |
T |
|
| Q |
313 |
gtaatatccaagctacaaaagatacccaatgatcaaatacacgagaaactaaaaataagctttgatggtttagaggatcatatggaaaagaatatatttc |
412 |
Q |
| |
|
||| |||| |||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |
|
|
| T |
3313464 |
gtattatcaaagctagaaaagatacctaatgatcaaatacatgagaaactaaaaataagctttgacggtttaagggatcatatggaaaaggatatatttc |
3313563 |
T |
|
| Q |
413 |
ttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaatagaagtgctgat |
512 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||| ||| | ||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3313564 |
ttgatgtgtgttgtttctttatcggtaaggatagagcatatgtcacaaatatactaaatggttgtggacttcatgctgatattggaataacagtgctgat |
3313663 |
T |
|
| Q |
513 |
agagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttcacctgag |
612 |
Q |
| |
|
||| ||||||| ||||| |||||||| ||||||||||||||||||||| | | || |||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
3313664 |
tgagcgaagcctaataaaaattgaaaagtataacaagcttggaatgcatgatttactgcgagacatgggacgagaaattgtccgtgaaagttcacctgag |
3313763 |
T |
|
| Q |
613 |
gagcctgagaaacgtactcgattgtggtgttttgaagatgtagttgatgtactggccgaacaaaccgtaagaat---tctacattgcattttgaattt |
707 |
Q |
| |
|
|||||||| || |||| ||||||||||| | ||| |||||||||||||||||| |||| || || |||||||| ||||||||||||||||||||| |
|
|
| T |
3313764 |
gagcctgaaaagcgtagtcgattgtggtatcatgaggatgtagttgatgtactgaccgaccatactgtaagaatttatctacattgcattttgaattt |
3313861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 47 - 826
Target Start/End: Complemental strand, 3393315 - 3392537
Alignment:
| Q |
47 |
ttggtccaggaagcataataatcatcacaacaagagatgcacgtctacttgacatccttggagttgattttatttatgaagcggagggattgaatgtgca |
146 |
Q |
| |
|
||||||| ||||| |||||||||||||||| |||||| ||| ||||| | ||||||| |||||||||||| |||||||| ||||||||||||| |
|
|
| T |
3393315 |
ttggtccgggaagtgtaataatcatcacaaccagagatctgcgtgtacttaatatccttgaagttgattttatctatgaagcagagggattgaatgctag |
3393216 |
T |
|
| Q |
147 |
cgaatctcgtaggcttttcaactggcatgcgtttaaggaggcgaatccaagtgaagctttcctcatactctccggagatgtagtttcctattgtggtgga |
246 |
Q |
| |
|
||| || | | ||||||| | ||||| |||| | ||| | ||||| |||| ||||| || ||||| || |||||||| |||||||||||||| |
|
|
| T |
3393215 |
cgagtcccttgagcttttctgtggacatgcttttaggaaggtaattccaacagaagacttccttattctctcaagatatgtagttgcctattgtggtgga |
3393116 |
T |
|
| Q |
247 |
ctaccactagctcttgaagtccttggatcttacttattcaataggagaaaacgagagtggcagagtgtaatatccaagctacaaaagatacccaatgatc |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||| |||| ||||| |||| ||||||||||||| |
|
|
| T |
3393115 |
ataccactagctcttgaagtccttggatcttacttattgaagaggagaaaacaagagtggcagagtgtattatcaaagcttgaaaaaatacccaatgatc |
3393016 |
T |
|
| Q |
347 |
aaatacacgagaaactaaaaataagctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcggtaaggatag |
446 |
Q |
| |
|
||||||| |||||||||||||| |||||| |||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3393015 |
aaatacatgagaaactaaaaattagctttaatggtttaagcgatcgtatggaaaaggatatatttcttgatgtctgttgtttctttatcggcaaggatag |
3392916 |
T |
|
| Q |
447 |
agcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataac |
546 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3392915 |
agcttatgttacaaagatactaaatggttgtggacttcatgctgatattggaataacagtgttgatagagagaagcctcataaaagttgaaaagaataaa |
3392816 |
T |
|
| Q |
547 |
aagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttcacctgaggagcctgagaaacgtactcgattgtggtgttttg |
646 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| || |
|
|
| T |
3392815 |
aagcttggaatgcatgatttgctacgagacatgggaagggaaattgttcgtgaaagttcaccggaggagcctgagaagcgtacccgattgtggtgtcatg |
3392716 |
T |
|
| Q |
647 |
aagatgtagttgatgtactggccgaacaaaccgtaagaat---tctacattgcattttgaatttttgtcatccttcacgatctttgaagataaaaataaa |
743 |
Q |
| |
|
| || |||||| ||||||||| || || ||||||||||| ||||||||| ||||||||| ||||||||| ||||| |||||| ||||||| | ||| |
|
|
| T |
3392715 |
aggacgtagttaatgtactggaagaccataccgtaagaatttctctacattgtattttgaatgtttgtcatctttcactatctttaaagataaca--aaa |
3392618 |
T |
|
| Q |
744 |
actatgtttcagaaatgnnnnnnnacttttcccatctattggctgaaaattgtgggattcatcatctcacaagtgtttgtcca |
826 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||| |||||| |
|
|
| T |
3392617 |
actatgtttcagaaatg--tatttacttttccaatctattggctgaaaattgtgggattcattatctcacatgtgtctgtcca |
3392537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 47 - 826
Target Start/End: Original strand, 3362568 - 3363347
Alignment:
| Q |
47 |
ttggtccaggaagcataataatcatcacaacaagagatgcacgtctacttgacatccttggagttgattttatttatgaagcggagggattgaatgtgca |
146 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| ||| ||||| | ||||||| |||||||||||| |||||||| |||| |||||||| |
|
|
| T |
3362568 |
ttggtccaggaagtataataatcatcacaaccagagatctgcgtgtacttaatatccttgaagttgattttatctatgaagcagaggaattgaatgctag |
3362667 |
T |
|
| Q |
147 |
cgaatctcgtaggcttttcaactggcatgcgtttaaggaggcgaatccaagtgaagctttcctcatactctccggagatgtagtttcctattgtggtgga |
246 |
Q |
| |
|
|| || | | ||||||| ||||| ||| | |||||| ||||| ||| ||||| || ||||| ||||||||||| |||||||||||||| |
|
|
| T |
3362668 |
tgagtcccttgagcttttctgtaaacatgcttttcggaaggcgattccaacacaagacttccttattctctcaagagatgtagttgcctattgtggtgga |
3362767 |
T |
|
| Q |
247 |
ctaccactagctcttgaagtccttggatcttacttattcaataggagaaaacgagagtggcagagtgtaatatccaagctacaaaagatacccaatgatc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||| ||||| |||||||| ||||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
3362768 |
ataccactagctcttgaagtccttggatcttacttgttcaagaggaaaaaacaagagtggcggagtgtattatcaaagctagaaaagatacccaatgatc |
3362867 |
T |
|
| Q |
347 |
aaatacacgagaaactaaaaataagctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcggtaaggatag |
446 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3362868 |
aaatacacgagatactaaaaataagctttgatggtttaaaggatcgtatggaaaagaatatatttcttgatgtctgctgtttctttatcggtaaggatag |
3362967 |
T |
|
| Q |
447 |
agcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataac |
546 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3362968 |
agcttatgttacaaagatactaaatggttgtggacttaatgctgatattggaataacagtgttgatagagagaagcctcataaaagttgaaaagaataaa |
3363067 |
T |
|
| Q |
547 |
aagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttcacctgaggagcctgagaaacgtactcgattgtggtgttttg |
646 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || | ||| ||||||||||| || |
|
|
| T |
3363068 |
aagcttggaatgcatgctttgctacgagacatgggaagggaaattgttcgtgaaagttcaccggaggagcctgaaaagcatacccgattgtggtgccatg |
3363167 |
T |
|
| Q |
647 |
aagatgtagttgatgtactggccgaacaaaccgtaagaatt---ctacattgcattttgaatttttgtcatccttcacgatctttgaagataaaaataaa |
743 |
Q |
| |
|
| || |||||| |||||||||| || | |||||||||||| |||||||||||||||| ||||||||| ||||| |||||| ||||||| | ||| |
|
|
| T |
3363168 |
aggacgtagttaatgtactggcagactataccgtaagaatttcagtacattgcattttgaacttttgtcatttttcactatctttaaagataaca--aaa |
3363265 |
T |
|
| Q |
744 |
actatgtttcagaaatgnnnnnnnacttttcccatctattggctgaaaattgtgggattcatcatctcac-aagtgtttgtcca |
826 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| || |||| |||||| |||||| |
|
|
| T |
3363266 |
actatgtttcagaaatg--tttttaattttccaatctattggctgaaaattgtgggattcattatttcactaagtgtctgtcca |
3363347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 235 - 606
Target Start/End: Complemental strand, 3408861 - 3408490
Alignment:
| Q |
235 |
tattgtggtggactaccactagctcttgaagtccttggatcttacttattcaataggagaaaacgagagtggcagagtgtaatatccaagctacaaaaga |
334 |
Q |
| |
|
|||||||| || ||||||| |||||||||||||||||||| |||||||| | |||| ||||| ||| ||| || ||| |||| ||| || | | | |
|
|
| T |
3408861 |
tattgtggagggttaccactggctcttgaagtccttggatcctacttatttgagaggacaaaacaagaatggataagcgtactatcaaagttagagagaa |
3408762 |
T |
|
| Q |
335 |
tacccaatgatcaaatacacgagaaactaaaaataagctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttat |
434 |
Q |
| |
|
| |||||||||||| | |||||||| || | |||||||| |||||||||| ||||| |||||| |||| ||||||||||||| | |||||||||||||| |
|
|
| T |
3408761 |
ttcccaatgatcaagtgcacgagaagctgagaataagctatgatggtttaaaggatgatatggtaaaggatatatttcttgacatttgttgtttctttat |
3408662 |
T |
|
| Q |
435 |
cggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagtt |
534 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||| ||||||||| |||||||||||||||||| || || ||||| | ||||||||||||||| |
|
|
| T |
3408661 |
tggtaaggacagggcctatgttacagagatactaaatggctgtggactttatgctgatattggaatagcggtcctcatagaccggagcctcctaaaagtt |
3408562 |
T |
|
| Q |
535 |
gaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttca |
606 |
Q |
| |
|
|| ||||||||||||||||||||||||| | | || |||||||||||||||||||||| |||||||||||| |
|
|
| T |
3408561 |
gagaagaataacaagcttggaatgcatgatttaataagagacatgggaagagaaattgtccgtgaaagttca |
3408490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 226 - 606
Target Start/End: Complemental strand, 7166217 - 7165837
Alignment:
| Q |
226 |
gtagtttcctattgtggtggactaccactagctcttgaagtccttggatcttacttattcaataggagaaaacgagagtggcagagtgtaatatccaagc |
325 |
Q |
| |
|
|||||| |||||||||| ||| ||||||| |||||||||||| | || |||||||||| | |||| ||||| ||| ||| | |||||| | | || |
|
|
| T |
7166217 |
gtagttgcctattgtggaggattaccactggctcttgaagtcatcggttcttacttatacgggaggacaaaacaagaatgggaaagtgtactcttgaaat |
7166118 |
T |
|
| Q |
326 |
tacaaaagatacccaatgatcaaatacacgagaaactaaaaataagctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttg |
425 |
Q |
| |
|
|| | | || |||||||||||| | || |||||||| | |||||||| ||| |||||| ||||| |||||| |||| |||||||||||||| | ||||| |
|
|
| T |
7166117 |
tagagagaattcccaatgatcaagtgcaagagaaactgagaataagctatgacggtttaaaggatgatatggcaaaggatatatttcttgatatatgttg |
7166018 |
T |
|
| Q |
426 |
tttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaatagaagtgctgatagagagaagcctc |
525 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||||| ||||||| ||||||||| || || ||||| | ||||| |
|
|
| T |
7166017 |
tttctttatcggcaaggatagagcctatgttactgagatactaaatggttgtggactttatgctgacattggaataacggtcctcgtagagcggagcctt |
7165918 |
T |
|
| Q |
526 |
ctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttca |
606 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
7165917 |
gtgaaaattgaaaagaataacaagcttggaatgcatgatttgcttagagacatgggaagagaaattgttcgccaaagttca |
7165837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 337 - 605
Target Start/End: Complemental strand, 3326422 - 3326154
Alignment:
| Q |
337 |
cccaatgatcaaatacacgagaaactaaaaataagctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcg |
436 |
Q |
| |
|
|||||||||||| | || |||||||| | ||| |||| ||||||||| ||||| |||||||||| ||||||||||||| | |||||||||||||| | |
|
|
| T |
3326422 |
cccaatgatcaagtgcaagagaaactgagaattagctacgatggtttaaaggatgatatggaaaaagatatatttcttgacatatgttgtttctttatag |
3326323 |
T |
|
| Q |
437 |
gtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttga |
536 |
Q |
| |
|
| ||||||||||| | |||||||||||||||||||| ||||||||| |||| ||||||||||| || || |||||| | ||||| ||||| |||| |
|
|
| T |
3326322 |
gcaaggatagagccgaagttacagagatactaaatggctgtggactttatgcaaatattggaataagtgttctcatagagcggagccttgtaaaaattga |
3326223 |
T |
|
| Q |
537 |
aaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttc |
605 |
Q |
| |
|
||||||||||||||||||||||||| | || || |||||||||||||||||||| ||||||||||||| |
|
|
| T |
3326222 |
aaagaataacaagcttggaatgcattgtttgataagagacatgggaagagaaattattcgtgaaagttc |
3326154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 334 - 640
Target Start/End: Complemental strand, 3268668 - 3268362
Alignment:
| Q |
334 |
atacccaatgatcaaatacacgagaaactaaaaataagctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttcttta |
433 |
Q |
| |
|
|||||| ||||| || | || |||||||||| |||||||| |||||||||| || || ||| |||||| ||||||||||||| | ||||||||||||| |
|
|
| T |
3268668 |
atacccgatgataaagtgcatgagaaactaagaataagctatgatggtttaaagaatgatacagaaaaggatatatttcttgacatatgttgtttcttta |
3268569 |
T |
|
| Q |
434 |
tcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagt |
533 |
Q |
| |
|
| |||||||| ||||| |||||| ||||||| || |||| |||| || |||||| |||||||||| || || ||||||||||||||||||||| | |
|
|
| T |
3268568 |
ttggtaaggacagagcatatgtttcagagattatagatggttgtgacttttatgctggtattggaataactgtcctcatagagagaagcctcctaaaaat |
3268469 |
T |
|
| Q |
534 |
tgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttcacctgaggagcctgagaaacgtactcga |
633 |
Q |
| |
|
|||||||| |||||| |||||||||||| | ||||| |||||||||||||||| ||||||||| |||| ||| | ||||||| ||| |||| |||| |
|
|
| T |
3268468 |
tgaaaagagtaacaaacttggaatgcatagtttgctaagagacatgggaagagagattgttcgtaaaagatcaataaaagagcctgggaagcgtagtcga |
3268369 |
T |
|
| Q |
634 |
ttgtggt |
640 |
Q |
| |
|
||||||| |
|
|
| T |
3268368 |
ttgtggt |
3268362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 337 - 606
Target Start/End: Complemental strand, 3287894 - 3287625
Alignment:
| Q |
337 |
cccaatgatcaaatacacgagaaactaaaaataagctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcg |
436 |
Q |
| |
|
|||||| ||||||| || || ||||| | |||||||| |||||| ||| | | ||||||||||| ||||||||||||| | |||||||||||||| | |
|
|
| T |
3287894 |
cccaatcatcaaatccaagaaaaactgagaataagctatgatgggttaaatcaagatatggaaaaggatatatttcttgacatttgttgtttctttattg |
3287795 |
T |
|
| Q |
437 |
gtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttga |
536 |
Q |
| |
|
||||||| ||| | ||||| ||||||||||||||||| ||||||||| ||||||| | ||||||| ||| || ||||| | ||||||||||||||||| |
|
|
| T |
3287794 |
gtaaggacagaacctatgtcacagagatactaaatggctgtggacttgatgctgacactggaataacagtcctcgtagagcggagcctcctaaaagttga |
3287695 |
T |
|
| Q |
537 |
aaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttca |
606 |
Q |
| |
|
|| |||||||||||| |||||||| | | || |||| |||||||||||||||||||||||||||||| |
|
|
| T |
3287694 |
caattataacaagcttgaaatgcatgatttaataagagatatgggaagagaaattgttcgtgaaagttca |
3287625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 337 - 606
Target Start/End: Complemental strand, 3263967 - 3263698
Alignment:
| Q |
337 |
cccaatgatcaaatacacgagaaactaaaaataagctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcg |
436 |
Q |
| |
|
|||||||||||| | || ||||| || | |||||| | ||||||||| ||||| |||||||||| ||||||||||||| | |||||||||||||||| |
|
|
| T |
3263967 |
cccaatgatcaagtgcaagagaagctgagaataagttacgatggtttaaaggatggtatggaaaaggatatatttcttgacatatgttgtttctttatcg |
3263868 |
T |
|
| Q |
437 |
gtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttga |
536 |
Q |
| |
|
| || || |||||||| || ||||||||||| ||||| |||||||||||||||| ||||||||||| | || ||||| | ||||| ||||| | || |
|
|
| T |
3263867 |
gcaaagacagagcttacgtaacagagatacttaatggctgtggacttcatgctgttattggaatagcgatcctcatagaacggagccttgtaaaaatgga |
3263768 |
T |
|
| Q |
537 |
aaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttca |
606 |
Q |
| |
|
|||||||||||| |||||||||||| | | || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3263767 |
aaagaataacaaaattggaatgcatgatttaataagagacatgggaagagaaattgtttgtgaaagttca |
3263698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 977 - 1112
Target Start/End: Complemental strand, 3392380 - 3392245
Alignment:
| Q |
977 |
ggtctttctttgtgttacagggaacaaaagccatcgagggattggttttgaagttgcaaaggaccagtagagtttgcttcaatacaattgcttttaagaa |
1076 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||||||||||||| |||| |
|
|
| T |
3392380 |
ggtctttctttgtgtcacagggaacaaaagccatcgagggattggttatgaagttgccaaagaccaatagagtttgctttgatacaattgcttttgagaa |
3392281 |
T |
|
| Q |
1077 |
aatgaagaaattgcgattgttgcaacttgatgatgt |
1112 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| |||| |
|
|
| T |
3392280 |
aatgaagagattgagattgttgcaacttgataatgt |
3392245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 406 - 606
Target Start/End: Complemental strand, 3399990 - 3399790
Alignment:
| Q |
406 |
atatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaatagaag |
505 |
Q |
| |
|
||||||||||| | ||||||||||| || || ||| | |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
3399990 |
atatttcttgacatatgttgtttcttgattggaaagaacagagctgatgttacagagatacttaatgcatgtggacttcatgctgatattggaatatcta |
3399891 |
T |
|
| Q |
506 |
tgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttc |
605 |
Q |
| |
|
| || |||||| | |||||||||||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||| ||||| | |||||||||| |
|
|
| T |
3399890 |
ttctcatagagcgcagcctcctaaaagtcgaaaagaataacaagcttggaatgcatgatttgctcagagacatgggaagagcaattgctggtgaaagttc |
3399791 |
T |
|
| Q |
606 |
a |
606 |
Q |
| |
|
| |
|
|
| T |
3399790 |
a |
3399790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 364 - 606
Target Start/End: Original strand, 13786303 - 13786545
Alignment:
| Q |
364 |
aaaataagctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagaga |
463 |
Q |
| |
|
|||||||| | |||||||||| |||| |||||| |||| | |||||||||| | |||||||||||||| ||| |||| | ||| ||||||||||||| |
|
|
| T |
13786303 |
aaaataagttatgatggtttaatggatgatatggtaaaggctgtatttcttgacatatgttgtttctttattggtgaggacaaagcctatgttacagaga |
13786402 |
T |
|
| Q |
464 |
tactaaatgggtgtggacttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgc |
563 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||| || || |||||| | |||||| |||||||||| | ||||||| |||||||||||| |
|
|
| T |
13786403 |
tactaaatggctgtggactttgtgctgatattggaatagctgtcctcatagagcggagcctcttaaaagttgaggacaataacacccttggaatgcataa |
13786502 |
T |
|
| Q |
564 |
tctgctacgagacatgggaagagaaattgttcgtgaaagttca |
606 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13786503 |
gttaataagagacatgggaagagaaattgttcgtgaaagttca |
13786545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 977 - 1112
Target Start/End: Original strand, 3363504 - 3363639
Alignment:
| Q |
977 |
ggtctttctttgtgttacagggaacaaaagccatcgagggattggttttgaagttgcaaaggaccagtagagtttgcttcaatacaattgcttttaagaa |
1076 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||||||||||||| |||| |
|
|
| T |
3363504 |
ggtctttctttgtgtcacagggaacaaaagccatcgagggattggttatgaagttgccaaagaccaatagagtttgctttgatacaattgcttttgagaa |
3363603 |
T |
|
| Q |
1077 |
aatgaagaaattgcgattgttgcaacttgatgatgt |
1112 |
Q |
| |
|
||||| | |||| ||||||||||||||||| |||| |
|
|
| T |
3363604 |
aatgattagattgagattgttgcaacttgataatgt |
3363639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 397 - 594
Target Start/End: Original strand, 31174549 - 31174746
Alignment:
| Q |
397 |
gaaaagaatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattg |
496 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||| || || ||| | |||||| |||||||||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
31174549 |
gaaaaggatatatttcttgacatatgttgtttcttcattggaaagaacagagctgatgttacagagatacttaatggctgtgggcttcatgctgatattg |
31174648 |
T |
|
| Q |
497 |
gaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgtt |
594 |
Q |
| |
|
|||||| || || || ||| | |||||| |||||||||| || |||||||||||| |||||||| | |||| ||||||||||||||| ||||||| |
|
|
| T |
31174649 |
gaatagttgtcctcattgagcgcagcctcataaaagttgataaaaataacaagcttcaaatgcatgatttgctcagagacatgggaagagcaattgtt |
31174746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 974 - 1112
Target Start/End: Original strand, 3314192 - 3314328
Alignment:
| Q |
974 |
tatggtctttctttgtgttacagggaacaaaagccatcgagggattggttttgaagttgcaaaggaccagtagagtttgcttcaatacaattgcttttaa |
1073 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | ||| || |||| | |||| | |
|
|
| T |
3314192 |
tatggtctttct--gtgtcacagggaacaaaagccatcgagggattggttatgaagttgcaaaggtccagtagagttggtttcgatgcaatcggttttga |
3314289 |
T |
|
| Q |
1074 |
gaaaatgaagaaattgcgattgttgcaacttgatgatgt |
1112 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| |||| |
|
|
| T |
3314290 |
gaaaatgaagagattgagattgttgcaacttgatcatgt |
3314328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 405 - 640
Target Start/End: Original strand, 13807603 - 13807838
Alignment:
| Q |
405 |
tatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaatagaa |
504 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| ||| | ||||| |||||| ||||||| ||| |||| ||||||||| |||||||||| |||||| |
|
|
| T |
13807603 |
tatatttcttgacatttgttgtttctttatcggaaagaagagagcctatgtttcagagattctagatggttgtggacttaatgctgatatgggaataact |
13807702 |
T |
|
| Q |
505 |
gtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagtt |
604 |
Q |
| |
|
| || |||||| | ||||| |||||||| ||||||||| | || ||||||||||||| | | |||||||||||||||||||| |||||| || |||| | |
|
|
| T |
13807703 |
atcctcatagagcggagccttctaaaagtcgaaaagaatgataaacttggaatgcatggtttactacgagacatgggaagagagattgtttgtaaaagat |
13807802 |
T |
|
| Q |
605 |
cacctgaggagcctgagaaacgtactcgattgtggt |
640 |
Q |
| |
|
|| ||||||| || ||| |||| ||||||||||| |
|
|
| T |
13807803 |
cagaagaggagcttgggaagcgtagtcgattgtggt |
13807838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 827 - 880
Target Start/End: Original strand, 3363373 - 3363425
Alignment:
| Q |
827 |
aagtttttggagaagttagttcatgagaaaaatgtcattttatatatgattggg |
880 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
3363373 |
aagtttttggaga-gttagttcatgagaatgatgtcattttatatataattggg |
3363425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 828 - 880
Target Start/End: Complemental strand, 3392510 - 3392459
Alignment:
| Q |
828 |
agtttttggagaagttagttcatgagaaaaatgtcattttatatatgattggg |
880 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
3392510 |
agtttttggaga-gttagttcatgagaatgatgtcattttatatataattggg |
3392459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 13807433 - 13807496
Alignment:
| Q |
235 |
tattgtggtggactaccactagctcttgaagtccttggatcttacttattcaataggagaaaac |
298 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
13807433 |
tattgtggaggattaccactagctcttgaagaaattggatcttacttatttgataggacaaaac |
13807496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 3288005 - 3287951
Alignment:
| Q |
226 |
gtagtttcctattgtggtggactaccactagctcttgaagtccttggatcttact |
280 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||||| |||||| |||| ||||||| |
|
|
| T |
3288005 |
gtagtttcttattgtggaggattaccactagctctagaagtcattggttcttact |
3287951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 340 - 606
Target Start/End: Complemental strand, 32412399 - 32412133
Alignment:
| Q |
340 |
aatgatcaaatacacgagaaactaaaaataagctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcggta |
439 |
Q |
| |
|
||||| ||| |||| |||||||||| |||||||| ||| |||||| ||||| ||||||||||| ||||||||||||| | |||| |||||||||||| | |
|
|
| T |
32412399 |
aatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctttatcggca |
32412300 |
T |
|
| Q |
440 |
aggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaa |
539 |
Q |
| |
|
|||| || || |||||||| |||||||||||||| |||||||| ||||||| ||||||||| || || |||| ||||||| ||||| ||||||| |
|
|
| T |
32412299 |
aggacagggcctatgttaccaagatactaaatgggcgtggactttatgctgacattggaataacggttctcgtagaacgaagccttgtaaaaattgaaaa |
32412200 |
T |
|
| Q |
540 |
gaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttca |
606 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| ||| | |||||| |
|
|
| T |
32412199 |
gaataacaaacttggaatgcatgatctgctaagagacatgggaagagaaattgtccgtcagagttca |
32412133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 405 - 606
Target Start/End: Complemental strand, 6907221 - 6907020
Alignment:
| Q |
405 |
tatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaatagaa |
504 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| |||| |||||||| ||||||||||| || ||||||||| ||||| ||| ||||||| |
|
|
| T |
6907221 |
tatatttcttgatgtatgttgtttctttatcggcaaggacagagactatgttaccgagatactaaacggttgtggactttttgctggtataggaatagct |
6907122 |
T |
|
| Q |
505 |
gtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagtt |
604 |
Q |
| |
|
|| || |||||||| ||||| |||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||| ||||| |
|
|
| T |
6907121 |
gtcctcatagagaggagccttttaaaagttgaaaagaataacaagcttggaatgcatgatttaataagagacatgggaagagaaattgttcgtggaagtt |
6907022 |
T |
|
| Q |
605 |
ca |
606 |
Q |
| |
|
|| |
|
|
| T |
6907021 |
ca |
6907020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 102; Significance: 4e-50; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 405 - 606
Target Start/End: Complemental strand, 7627 - 7426
Alignment:
| Q |
405 |
tatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaatagaa |
504 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| | || |||||||| |||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
7627 |
tatatttcttgatgtatgttgtttctttatcggcaaggacaaagactatgttaccgagatactaaatggttgtggactttttgctgatattggaatagct |
7528 |
T |
|
| Q |
505 |
gtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagtt |
604 |
Q |
| |
|
|| || |||||||| ||||| |||||||| |||||||||||||||||||||||||||| | | || ||||||||||||||||||| ||||| | ||||| |
|
|
| T |
7527 |
gtcctcatagagaggagccttctaaaagtcgaaaagaataacaagcttggaatgcatgatttaataagagacatgggaagagaaatagttcgcggaagtt |
7428 |
T |
|
| Q |
605 |
ca |
606 |
Q |
| |
|
|| |
|
|
| T |
7427 |
ca |
7426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 377 - 637
Target Start/End: Complemental strand, 14768317 - 14768056
Alignment:
| Q |
377 |
atggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttat-gttacagagatactaaatgggt |
475 |
Q |
| |
|
|||||||||||||| || | ||||| ||||||||||||| | |||| ||||||||| || ||||||||||| || |||||||||||| ||||||| | |
|
|
| T |
14768317 |
atggtttagaggatgatttaaaaaaggatatatttcttgacatatgttttttctttattggcaaggatagagcctaacgttacagagatattaaatggat |
14768218 |
T |
|
| Q |
476 |
gtggacttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgaga |
575 |
Q |
| |
|
|||||||| ||||||||||||||||| || || ||||| | |||||| ||||||||| |||||||||||||||| |||||||| | || || | || |
|
|
| T |
14768217 |
gtggactttatgctgatattggaatatctgtcctcatagaacggagcctcttaaaagttgtaaagaataacaagcttcaaatgcatgatttgatatggga |
14768118 |
T |
|
| Q |
576 |
catgggaagagaaattgttcgtgaaagttcacctgaggagcctgagaaacgtactcgattgt |
637 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| | ||||||| || |||| |||||||| |
|
|
| T |
14768117 |
catgggaagagaaattgtccgtcaaagttcaccaaaagagcctggaaagcgtagtcgattgt |
14768056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 370 - 642
Target Start/End: Complemental strand, 8373136 - 8372864
Alignment:
| Q |
370 |
agctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaa |
469 |
Q |
| |
|
|||| |||||||||||| ||| ||| |||||| ||||||||||||| | ||||||||||| || || ||| | |||| | |||| |||||||| || | |
|
|
| T |
8373136 |
agctatgatggtttagaagattatacagaaaaggatatatttcttgacatatgttgtttcttcattggaaagaacagagttgatgtcacagagatcctta |
8373037 |
T |
|
| Q |
470 |
atgggtgtggacttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgct |
569 |
Q |
| |
|
|||| |||||||||||||||||||||||| || || || |||||| | |||||| |||||||||| |||||||||||| || ||||||| | | || |
|
|
| T |
8373036 |
atggttgtggacttcatgctgatattggagtatctgttcttatagagcgtagcctcataaaagttgataagaataacaagtttcagatgcatgatttact |
8372937 |
T |
|
| Q |
570 |
acgagacatgggaagagaaattgttcgtgaaagttcacctgaggagcctgagaaacgtactcgattgtggtgt |
642 |
Q |
| |
|
||| ||||||||||||| ||| || | ||||||||| | | |||||||| || | || ||||||||||||| |
|
|
| T |
8372936 |
acgcgacatgggaagagcaatcgtcagcgaaagttcagcaaaagagcctgaaaagcatagtcgattgtggtgt |
8372864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 283
Target Start/End: Complemental strand, 8373258 - 8373223
Alignment:
| Q |
248 |
taccactagctcttgaagtccttggatcttacttat |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8373258 |
taccactagctcttgaagtccttggatcttacttat |
8373223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 370 - 472
Target Start/End: Complemental strand, 31060258 - 31060156
Alignment:
| Q |
370 |
agctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaa |
469 |
Q |
| |
|
||||| ||||||||||| ||| ||||| |||| |||||||| |||| | ||||||||||| || || ||| | |||||| |||||||||||||||| | |
|
|
| T |
31060258 |
agcttcgatggtttagaagattatatgttaaaggatatattttttgacatatgttgtttcttcattggaaagaacagagctgatgttacagagatactta |
31060159 |
T |
|
| Q |
470 |
atg |
472 |
Q |
| |
|
||| |
|
|
| T |
31060158 |
atg |
31060156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 544 - 599
Target Start/End: Complemental strand, 5261486 - 5261431
Alignment:
| Q |
544 |
aacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtga |
599 |
Q |
| |
|
|||| |||||||||||||| | || | ||||| ||||||||||||||||||||||| |
|
|
| T |
5261486 |
aacatgcttggaatgcatggtttgttgcgagatatgggaagagaaattgttcgtga |
5261431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 544 - 599
Target Start/End: Complemental strand, 5285485 - 5285430
Alignment:
| Q |
544 |
aacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtga |
599 |
Q |
| |
|
|||| |||||||||||||| | |||| ||||| |||||||||| |||||||||||| |
|
|
| T |
5285485 |
aacatgcttggaatgcatggtttgctgcgagatatgggaagaggaattgttcgtga |
5285430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 544 - 601
Target Start/End: Complemental strand, 5075071 - 5075014
Alignment:
| Q |
544 |
aacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaa |
601 |
Q |
| |
|
||||||||||||||||||| | |||| || || |||||||||||||| ||||||||| |
|
|
| T |
5075071 |
aacaagcttggaatgcatgatttgctgcgtgatatgggaagagaaatcattcgtgaaa |
5075014 |
T |
|
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Target: scaffold0729 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0729
Description:
Target: scaffold0729; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 539 - 587
Target Start/End: Complemental strand, 5693 - 5645
Alignment:
| Q |
539 |
agaataacaagcttggaatgcatgctctgctacgagacatgggaagaga |
587 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || ||||| |||||| |
|
|
| T |
5693 |
agaataacaagcttggaatgcatgttctgctacaagccatggcaagaga |
5645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000007; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 544 - 628
Target Start/End: Original strand, 4351891 - 4351975
Alignment:
| Q |
544 |
aacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttcacctgaggagcctgagaaacgta |
628 |
Q |
| |
|
||||||||||| ||||||| | |||| ||||| |||||||||||||| ||||||| | ||||| ||||||||||| |||||| |
|
|
| T |
4351891 |
aacaagcttggcatgcatgatttgctgcgagatatgggaagagaaatcattcgtgagaaatcaccaaaggagcctgaggaacgta |
4351975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 539 - 587
Target Start/End: Original strand, 6792936 - 6792984
Alignment:
| Q |
539 |
agaataacaagcttggaatgcatgctctgctacgagacatgggaagaga |
587 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || ||||| |||||| |
|
|
| T |
6792936 |
agaataacaagcttggaatgcatgttctgctacaagccatggcaagaga |
6792984 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 544 - 587
Target Start/End: Complemental strand, 4135122 - 4135079
Alignment:
| Q |
544 |
aacaagcttggaatgcatgctctgctacgagacatgggaagaga |
587 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||||||||||| |
|
|
| T |
4135122 |
aacaagcttggaatgcatgatttgctacgagatatgggaagaga |
4135079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 6503615 - 6503545
Alignment:
| Q |
10 |
gagcaattaaatgcattatgtggaaatcgaaatgggattggtccaggaagcataataatcatcacaacaag |
80 |
Q |
| |
|
|||||| |||| || || ||||||||||| || || |||||||||| |||| |||||||||||||||||| |
|
|
| T |
6503615 |
gagcaactaaaggctttgtgtggaaatcgggattggtttggtccaggcagcaaaataatcatcacaacaag |
6503545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 544 - 685
Target Start/End: Original strand, 4334214 - 4334355
Alignment:
| Q |
544 |
aacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttcacctgaggagcctgagaaacgtactcgattgtggtgtt |
643 |
Q |
| |
|
||||||||||| ||||||| | |||| ||||| |||||||||||||| ||||||| | ||||| |||||||||| |||||| | | ||||||| | |
|
|
| T |
4334214 |
aacaagcttggcatgcatgatttgcttcgagatatgggaagagaaatcattcgtgagaaatcaccaatggagcctgaggaacgtagtaggttgtggtttc |
4334313 |
T |
|
| Q |
644 |
ttgaagatgtagttgatgtactggccgaacaaaccgtaagaa |
685 |
Q |
| |
|
||| ||||| |||||||| || | ||||| || ||||||| |
|
|
| T |
4334314 |
atgaggatgtgcttgatgtattgtcagaacatactgtaagaa |
4334355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 544 - 621
Target Start/End: Original strand, 4359072 - 4359149
Alignment:
| Q |
544 |
aacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttcacctgaggagcctgag |
621 |
Q |
| |
|
||||||||||| ||||||| | |||| ||||| |||||||||||||| ||||||| | ||||| ||||||||||| |
|
|
| T |
4359072 |
aacaagcttggcatgcatgatttgctccgagatatgggaagagaaatcattcgtgagaaatcaccaaaggagcctgag |
4359149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 6832402 - 6832439
Alignment:
| Q |
47 |
ttggtccaggaagcataataatcatcacaacaagagat |
84 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
6832402 |
ttggtcgaggaagcaaaataatcatcacaacaagagat |
6832439 |
T |
|
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