View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_30 (Length: 476)
Name: NF18178_low_30
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 45 - 433
Target Start/End: Complemental strand, 27014584 - 27014194
Alignment:
| Q |
45 |
gagacaccacagtaagag--tataaaacagtcctcactttgttaaaaccatatatgtcaatcagaagatgaacccctttgaagatagctcataattctgc |
142 |
Q |
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| T |
27014584 |
gagacaccacaataagagagtctaaaacagtcctcactttgttaaaaccctatatgtcaatcagaagatcaacgcctttgaagatagctcataattctgc |
27014485 |
T |
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| Q |
143 |
catggtaatcgaacaaagactaacatcactagagtacctgaagatgagaataccaacatgatcatgcaaagcaccaccacaagctgccttgccggcaaga |
242 |
Q |
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| T |
27014484 |
catggtaattga-caaagactaacatcactagagtacctgaagatgagattaccaacatgatcatgcaaaacacagccacaagctgccttgccggcaaga |
27014386 |
T |
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| Q |
243 |
tgagacactgcaccgtcccagttaagcatcaaccaatcctcataaaatgcctcacacaaaaaaggacattgacgaactgacatgaccatcaagcctagca |
342 |
Q |
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| T |
27014385 |
tgagacattgcaacgtcgcagttaagcatcaaccaatcctcataaaatggctctcataaaaaagaacattgacgaactgcaatggccatcaagcctagca |
27014286 |
T |
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| Q |
343 |
atccttcaatgtaaagaaaaactcagcaatgaaaacaatctgacgctttgacttaggtcatggttggttaaaagac-tttttgcaaggcttt |
433 |
Q |
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| T |
27014285 |
atccttcaatgtaaagaaacactcagcaatgaaaacaatctgacactttgacttaggtcatggttggttaaaacacttttttgcaaggcttt |
27014194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 151
Target Start/End: Complemental strand, 13023232 - 13023198
Alignment:
| Q |
117 |
cctttgaagatagctcataattctgccatggtaat |
151 |
Q |
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| T |
13023232 |
cctttgaagatagctcataattcagccatggtaat |
13023198 |
T |
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