View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_32 (Length: 472)
Name: NF18178_low_32
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_32 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 8 - 456
Target Start/End: Original strand, 33824661 - 33825108
Alignment:
| Q |
8 |
gagatgaactacttaatgatgatgattcaccaaaatggccaaagagtttaagcaggtggaaagagcgattaggcctaaagagatcaagtgcatctaagaa |
107 |
Q |
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| T |
33824661 |
gagatgaactacttaatgatgatgattcaccaaaatggccaaagagtttaagcaggtggaaagagcgattaggcctaaagagatcaagtgcatctaagaa |
33824760 |
T |
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| Q |
108 |
agacaaggagaaacaaaaaatgcagaaatctgctgctaaccaaacagtgcctagttttggacaaggagaaacaactgttaacaaagaaagtatggtaaga |
207 |
Q |
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| T |
33824761 |
agacaaggagaaacaaaaaatgcagaagtctgctgctaaccaaacagtgcctagttttggacaaggagaaacaactgttaacaaagaaagtatggtaaga |
33824860 |
T |
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| Q |
208 |
tgttcatctatccctctc---atctcattctttttcattgcatgctatactagttacttacgttttgttcggataacagcttaaccaagtgtgtatatca |
304 |
Q |
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| T |
33824861 |
tgttcatctatccctctcataatctaattctttttcattgcatgctatactagttacttatgttttgttcagataacagcttaaccaagtgtgtatatca |
33824960 |
T |
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| Q |
305 |
caaacgtttatcatataaatgcttatggaaataaggtgaaactattttcatataaggttataacctgttcatataaactatcttgtagagcttatagaca |
404 |
Q |
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| T |
33824961 |
caaacgtttatcatataaatgcttatggaaataaggtgaaactattttcaaataaggttataacctgttcatataaactatcttgtagagcttatagaca |
33825060 |
T |
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| Q |
405 |
tgtcataagctctctcaaacagtcagtctctccaggcttatgttagtatatg |
456 |
Q |
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| T |
33825061 |
tgtcataagctctctcaaa----cagtctctccgggcttatgttagtatatg |
33825108 |
T |
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Target: scaffold0110 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 35851 - 35800
Alignment:
| Q |
377 |
ataaactatcttgtagagcttatagacatgtcataagctctctcaaacagtc |
428 |
Q |
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| T |
35851 |
ataaactatcctggagagcttatggacatgtcataagctctctcaaacagtc |
35800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 421
Target Start/End: Original strand, 9104189 - 9104217
Alignment:
| Q |
393 |
agcttatagacatgtcataagctctctca |
421 |
Q |
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| T |
9104189 |
agcttatagacatgtcataagctctctca |
9104217 |
T |
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