View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_33 (Length: 472)
Name: NF18178_low_33
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 117 - 457
Target Start/End: Complemental strand, 35646943 - 35646603
Alignment:
| Q |
117 |
tattgttacataccagtatcaaagccttgattgcagttttatcaatggaaaagccaatagcatcagtcttttgaacagaaagtaaaacatccacaaaatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35646943 |
tattgttacataccagtatcaaagccttgattgcagttttatcaatggaaaagccaatagcatcagtcttttgaacagaaagtaaaacatccacaaaatc |
35646844 |
T |
|
| Q |
217 |
attatgctcctcattttcaacatctccatcagatctacgactaatgtggtcctcaattacttgttctataaaatcatccaaaatttttgcacatttttct |
316 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35646843 |
attatgctcctcattctcaacatctccatcagatctacgactaatgtggtcctcaattacttgttctataaaatcatccaaaatttttgcacatttttct |
35646744 |
T |
|
| Q |
317 |
gccttgccataaagaccatttacttttcccaaccaatcaagccatggtatataatctcctatacatacagtacctaataactctccaaactccaacaacc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35646743 |
gccttgccataaagaccatttacttttcccaaccaatcaagccatggtatataatctcctatacatacagtacctaataactctccaaactccaacaacc |
35646644 |
T |
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| Q |
417 |
actcgtgaaatctcttgccttttccttcacggtatgttttt |
457 |
Q |
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||| |||||||||||| |||||||||||||||||||||||| |
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| T |
35646643 |
acttgtgaaatctcttaccttttccttcacggtatgttttt |
35646603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 114 - 457
Target Start/End: Complemental strand, 35656371 - 35656025
Alignment:
| Q |
114 |
tgatattgttacataccagtatcaaagccttgattgcagttttatcaatggaaaagccaatagcatcagtcttttgaacagaaagtaaaacatccacaaa |
213 |
Q |
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||||||| |||| ||| ||||||||||||||||||| | || ||||||| | ||||| ||||||| ||||||||||| ||||| |||||||||||||| |
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| T |
35656371 |
tgatattattacttacaagtatcaaagccttgattgaaattctatcaattgggaagcccatagcattagtcttttgaagcgaaagcaaaacatccacaaa |
35656272 |
T |
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| Q |
214 |
atcattatgctcctcattttcaacatc---tccatcagatcta---cgactaatgtggtcctcaattacttgttctataaaatcatccaaaatttttgca |
307 |
Q |
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| T |
35656271 |
atcactctgctc---attttcaacaccatgtccattagttctatcaccactaatgtgctcctcaatgacttcctcaaaaaattcatccaattgtttggcc |
35656175 |
T |
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| Q |
308 |
catttttctgccttgccataaagaccatttacttttcccaaccaatcaagccatggtatataatctcctatacatacagtacctaataactctccaaact |
407 |
Q |
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||||||||| |||| ||||| |||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| | ||||| ||||| | |
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| T |
35656174 |
actttttctgctttgctataaaaaccattaacttttcccaaccaatcaagccaaggtatatagtctcctatacatacagtacccagcaactccccaaatt |
35656075 |
T |
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| Q |
408 |
ccaacaaccactcgtgaaatctcttgccttttccttcacggtatgttttt |
457 |
Q |
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| T |
35656074 |
ccaacaacacctcctgaaatttcatccctcttccttcacggtatcttttt |
35656025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 260 - 415
Target Start/End: Complemental strand, 35673790 - 35673637
Alignment:
| Q |
260 |
atgtggtcctcaattacttgttctataaaatcatccaaaatttttgcacatttttctgcct-tgccataaagaccatttacttttcccaaccaatcaagc |
358 |
Q |
| |
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||||| ||||||||||||| ||| ||| ||||||||| ||| | ||||||||||||| ||| ||||| || || ||||||||||||||||||||| |
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| T |
35673790 |
atgtgctcctcaattactt---ctacaaactcatccaaattttgggtacatttttctgcccctgctataaaaacgatcaacttttcccaaccaatcaagc |
35673694 |
T |
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| Q |
359 |
catggtatataatctcctatacatacagtacctaataactctccaaactccaacaac |
415 |
Q |
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|| |||||||||||||| ||||||||| |||| ||||| | |||||||| |||||| |
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| T |
35673693 |
caaggtatataatctcccatacatacactacccaataatcccccaaactctaacaac |
35673637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 413
Target Start/End: Complemental strand, 35642004 - 35641718
Alignment:
| Q |
127 |
taccagtatcaaagccttgattgcagttttatcaatggaaaagccaatagcatcagtcttttgaacagaaagtaaaacatccacaaaatcattatgctcc |
226 |
Q |
| |
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|||||||| |||| |||| ||||||||| ||||||| ||||||||| ||||| |||||||||| ||||| |||| |||||||||||| | || |
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| T |
35642004 |
taccagtaacaaacccttaattgcagttctatcaattgaaaagccagcagcattgctcttttgaactgaaagcaaaatgtccacaaaatcactggttccc |
35641905 |
T |
|
| Q |
227 |
tcattttcaacatctccatcagatctacgacta---atgtggtcctcaattacttgttctataaaatcatccaaaatttttgcacatttttctgccttgc |
323 |
Q |
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||| |||||| |||||||||||||| || | ||||| |||||||| |||| || | ||| ||||||||| ||| || |||||||||||||| |
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| T |
35641904 |
tcac---caacatgtccatcagatctactaccactgatgtgctcctcaataactttctcaaaaaattcatccaaatgtttagccactttttctgccttgc |
35641808 |
T |
|
| Q |
324 |
cataaagaccatttacttttcccaaccaatcaagccatggtatataatctcctatacatacagtacctaataactctccaaactccaaca |
413 |
Q |
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||| | |||||| || || |||||||| | |||||| |||||||||||||||||| | | | ||| || ||||||||||||||||||| |
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| T |
35641807 |
tatagaaaccattaaccttacccaaccatttaagccaaggtatataatctcctataaagaatgaacccaacaactctccaaactccaaca |
35641718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35647059 - 35647012
Alignment:
| Q |
1 |
atattcaatccaccatatatgctagagcaataaatatgcaacaaaagg |
48 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35647059 |
atattcaatccaccatatatgctagagcaataaatatgcaacaaaagg |
35647012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 413
Target Start/End: Complemental strand, 35649157 - 35649054
Alignment:
| Q |
310 |
tttttctgccttgccataaagaccatttacttttcccaaccaatcaagccatggtatataatctcctatacatacagtacctaataactctccaaactcc |
409 |
Q |
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|||||||||||| | ||||| |||||| || || |||||||||| ||| | ||||| |||||||||||| | | | || |||||||||||||||||||| |
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| T |
35649157 |
tttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtatgtaatctcctataaagaaaataactaataactctccaaactcc |
35649058 |
T |
|
| Q |
410 |
aaca |
413 |
Q |
| |
|
|||| |
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|
| T |
35649057 |
aaca |
35649054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 413
Target Start/End: Complemental strand, 35677237 - 35677134
Alignment:
| Q |
310 |
tttttctgccttgccataaagaccatttacttttcccaaccaatcaagccatggtatataatctcctatacatacagtacctaataactctccaaactcc |
409 |
Q |
| |
|
|||||||||||| | ||||| |||||| || || |||||||||| ||| | ||||| |||||||||||| | | | || |||||||||||||||||||| |
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|
| T |
35677237 |
tttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtatgtaatctcctataaagaaaataactaataactctccaaactcc |
35677138 |
T |
|
| Q |
410 |
aaca |
413 |
Q |
| |
|
|||| |
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|
| T |
35677137 |
aaca |
35677134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 35649340 - 35649250
Alignment:
| Q |
127 |
taccagtatcaaagccttgattgcagttttatcaatggaaaagccaatagcatcagtcttttgaacagaaagtaaaacatccacaaaatca |
217 |
Q |
| |
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|||||||| |||| |||| ||||||||| ||||||| || |||| | || ||| |||||||||| ||||| ||||| |||||||||||| |
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|
| T |
35649340 |
taccagtaacaaacccttaattgcagttctatcaattgagaagctagtatcattgctcttttgaactgaaagcaaaacgtccacaaaatca |
35649250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 35677420 - 35677330
Alignment:
| Q |
127 |
taccagtatcaaagccttgattgcagttttatcaatggaaaagccaatagcatcagtcttttgaacagaaagtaaaacatccacaaaatca |
217 |
Q |
| |
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|||||||| |||| |||| ||||||||| ||||||| || |||| | || ||| |||||||||| ||||| ||||| |||||||||||| |
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|
| T |
35677420 |
taccagtaacaaacccttaattgcagttctatcaattgagaagctagtatcattgctcttttgaactgaaagcaaaacgtccacaaaatca |
35677330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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