View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_34 (Length: 471)
Name: NF18178_low_34
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_34 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 125 - 471
Target Start/End: Original strand, 4263461 - 4263807
Alignment:
| Q |
125 |
ccaattgaaccaactgcaattcaacctcagttcaaccaaaagagcgtccgtgcttcacaggttcaaccaaactacaatgtacccgggatcaaaccaaccg |
224 |
Q |
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| T |
4263461 |
ccaattgaaccaactgcaattcaacctcagttcaaccaaaagagcgtccgtgcttcacaggttcaaccaaactacaatgtacccgggatcaaaccaaccg |
4263560 |
T |
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| Q |
225 |
acaaacatgaactggtcagttctcaattcaatcggttgcaccggctgatttagttgggcttttaaaacattgaaatgaataaatgatactctacatatag |
324 |
Q |
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| T |
4263561 |
acaaacatgaactggtcagttctcaattcaatcggttgcaccggctgatttagttgggcttttaaaacattgaaatgaataaatgatactctacatatag |
4263660 |
T |
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| Q |
325 |
agcttatcgaatattaaccatctaatctaactacttattagcaactaactattaagcacggatacaaacatggacacgacacggacaatgacaccgaaaa |
424 |
Q |
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| T |
4263661 |
agcttatcgaatattaaccatctaatctaactacttattagcaactaactattaagcacggatacaaacatggacacgacacggacaatgacaccgaaaa |
4263760 |
T |
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| Q |
425 |
tcacataattcaatggaatcataacgtgcctgacaacaggacacgcc |
471 |
Q |
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| T |
4263761 |
tcacataattcaatggaatcataacgtgcctgacaacaggacacgcc |
4263807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 4263351 - 4263410
Alignment:
| Q |
13 |
gaacctgtgagacctatgtatcatggtaaaattgattcaaccatatgcttgaactggatgac |
74 |
Q |
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| T |
4263351 |
gaacctgtgagacctatgtatcatggtaaaattgattcaacc--atgcttgaactggatgac |
4263410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 17593824 - 17593788
Alignment:
| Q |
371 |
aactattaagcacggatacaaacatggacacgacacg |
407 |
Q |
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|||||| ||||||||||||||||| |||||||||||| |
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| T |
17593824 |
aactatgaagcacggatacaaacacggacacgacacg |
17593788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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