View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_35 (Length: 471)
Name: NF18178_low_35
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Original strand, 2340587 - 2341033
Alignment:
| Q |
11 |
atcatcaatttaaagagacatcaatagctaaaatttaattcccaaacttctaagtatctgattcaaacaacgtgacagcatgattgtttaaatgccatta |
110 |
Q |
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| T |
2340587 |
atcataaatttaaagagacatcaatagctaaaatttaattcccaaacttctaagtatctgattcaaacaacgtgacagcatgattgtttaaatgccatta |
2340686 |
T |
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| Q |
111 |
cttgcgaaacagagggaggttgagatagagaaaattactggtcacagaaaatgtattacgtacgcgatat-acaagattcatgatttttaatacattatg |
209 |
Q |
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| T |
2340687 |
cttgcgaaacagagggaggttgagatagagaaaattactggtcacagaaaatgtattacgtacgtgatattacaagattcatgatttttgatacattatg |
2340786 |
T |
|
| Q |
210 |
gtaatgcaggatagtattaacaactggagaacaactgtattgattctaacaactatattgtttccggcagctggcatatggtttatcggtatgtcatctt |
309 |
Q |
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| T |
2340787 |
gtaatgcaggatagtattaacagctggagaacaactgtattgattctaacaactatattgtttccggcagctggcatatggtttatcggtatgtcatctt |
2340886 |
T |
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| Q |
310 |
gttcatttaatagtaaaacggagaattggagttagcatttctttcgacatatcattgttgcaagagcaaagatgttataagaaactggagttgttggaca |
409 |
Q |
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| T |
2340887 |
gttcatttactagtaaaacggagaattggagttagcatttctttcgacatatcattgttgcaagagcaaagatgttataagaaactggagttgttggaca |
2340986 |
T |
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| Q |
410 |
tgaatgaaattaattgctataaaaatcaaatccaaccaaagtcatga |
456 |
Q |
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| T |
2340987 |
tgaatgaaattaattgctataaaaatcaaatccaaccaaagtcatga |
2341033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 2348596 - 2348691
Alignment:
| Q |
211 |
taatgcaggatagtattaacaactggagaacaactgtattgattctaacaactatattgtttccggcagctggcatatggtttatcggtatgtcat |
306 |
Q |
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| T |
2348596 |
taatgcaggatagcattaacaactggagagcaactgcattgatcttaacaaccatattgtttccagcggctggaatatggtttatcggtatgtcat |
2348691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 36794253 - 36794170
Alignment:
| Q |
224 |
tattaacaactggagaacaactgtattgattctaacaactatattgtttccggcagctggcatatggtttatcggtatgtcatc |
307 |
Q |
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| T |
36794253 |
tattaacaactggagaactaccgcgttgattctaacaacaatattttttccagcagctgcaatatggtttataggtaagtcatc |
36794170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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