View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_low_38 (Length: 464)

Name: NF18178_low_38
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_low_38
NF18178_low_38
[»] chr8 (7 HSPs)
chr8 (14-449)||(13532654-13533071)
chr8 (14-449)||(13622194-13622611)
chr8 (136-208)||(12704263-12704336)
chr8 (65-109)||(28883749-28883793)
chr8 (82-135)||(13533103-13533156)
chr8 (82-135)||(13622643-13622696)
chr8 (79-119)||(12704219-12704259)
[»] chr4 (12 HSPs)
chr4 (14-109)||(53089866-53089961)
chr4 (34-100)||(23564441-23564507)
chr4 (39-104)||(19680584-19680649)
chr4 (27-104)||(36165337-36165414)
chr4 (29-88)||(23566635-23566694)
chr4 (29-109)||(36165765-36165845)
chr4 (79-134)||(11784979-11785034)
chr4 (55-100)||(1460382-1460427)
chr4 (65-106)||(9928852-9928893)
chr4 (141-207)||(19680320-19680388)
chr4 (143-205)||(55240639-55240703)
chr4 (60-92)||(36165567-36165599)
[»] chr7 (3 HSPs)
chr7 (23-93)||(8745761-8745831)
chr7 (53-100)||(5473260-5473307)
chr7 (29-90)||(35035111-35035172)
[»] chr3 (8 HSPs)
chr3 (141-208)||(30130781-30130850)
chr3 (16-100)||(20982191-20982276)
chr3 (28-107)||(20491029-20491108)
chr3 (140-208)||(30135501-30135571)
chr3 (140-208)||(30141630-30141700)
chr3 (140-208)||(30145052-30145122)
chr3 (40-90)||(20995655-20995705)
chr3 (28-100)||(20982760-20982832)
[»] chr2 (1 HSPs)
chr2 (31-185)||(43829621-43829773)
[»] chr6 (1 HSPs)
chr6 (53-109)||(10742172-10742228)


Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 449
Target Start/End: Complemental strand, 13533071 - 13532654
Alignment:
Q  14 agattgtgatatgagaattggactcaggcccacgccagacgtgaaggtgggtgttaaagttagttttgaagttgtttgtggtttgttgttaatcccgcat 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||    
T  13533071 agattgtgatatgataattggactcaggcccacgccagacgtgaaggtggatgttaaagttagttttgaagttgtgtgtggtttgttgttaatctcgcat 13532972  T
Q  114 cgctcatgttctcggactgttattaaatgtataaatatgcttgagtcttctcatcttttgagctagcttttgagaagatccaaacctatttaacaattac 213  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |||               |||||||||    
T  13532971 cgctcatgttctcggactgttattaaatgtataaatatgtttgagtcttctcatcctttaagctagcttttgggaa---------------aacaattac 13532887  T
Q  214 tttccccgtataataaaataaaatgatgcatatgtatgaaaagctatttaccaatattttgtagaaaaaatgagtatgatgaattgacagttcgctagag 313  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||   ||||||||||||||||||    
T  13532886 tttcctcgtataataaaataaaatgatgcataagtatgaaaagctatttaccaatattttgtagaaaaaataagtatga---attgacagttcgctagag 13532790  T
Q  314 agttcacaatcaatataatagatgtggggttcaaagtgatttgggtagttatttgtgaattgtgatggcaagtttgtctatatatgaggggaaaccgatc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13532789 agttcacaatcaatataatagatgtggggttcaaagtgatttgggtagttatttgtgaattgtgatggcaagtttgtctatatatgaggggaaaccgatc 13532690  T
Q  414 ttggtctgctgtatttgtcatttgggaccatcttag 449  Q
    ||||||||||||||||||||||||||||||||||||    
T  13532689 ttggtctgctgtatttgtcatttgggaccatcttag 13532654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 449
Target Start/End: Complemental strand, 13622611 - 13622194
Alignment:
Q  14 agattgtgatatgagaattggactcaggcccacgccagacgtgaaggtgggtgttaaagttagttttgaagttgtttgtggtttgttgttaatcccgcat 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||    
T  13622611 agattgtgatatgataattggactcaggcccacgccagacgtgaaggtggatgttaaagttagttttgaagttgtgtgtggtttgttgttaatctcgcat 13622512  T
Q  114 cgctcatgttctcggactgttattaaatgtataaatatgcttgagtcttctcatcttttgagctagcttttgagaagatccaaacctatttaacaattac 213  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |||               |||||||||    
T  13622511 cgctcatgttctcggactgttattaaatgtataaatatgtttgagtcttctcatcctttaagctagcttttgggaa---------------aacaattac 13622427  T
Q  214 tttccccgtataataaaataaaatgatgcatatgtatgaaaagctatttaccaatattttgtagaaaaaatgagtatgatgaattgacagttcgctagag 313  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||   ||||||||||||||||||    
T  13622426 tttcctcgtataataaaataaaatgatgcataagtatgaaaagctatttaccaatattttgtagaaaaaataagtatga---attgacagttcgctagag 13622330  T
Q  314 agttcacaatcaatataatagatgtggggttcaaagtgatttgggtagttatttgtgaattgtgatggcaagtttgtctatatatgaggggaaaccgatc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13622329 agttcacaatcaatataatagatgtggggttcaaagtgatttgggtagttatttgtgaattgtgatggcaagtttgtctatatatgaggggaaaccgatc 13622230  T
Q  414 ttggtctgctgtatttgtcatttgggaccatcttag 449  Q
    ||||||||||||||||||||||||||||||||||||    
T  13622229 ttggtctgctgtatttgtcatttgggaccatcttag 13622194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 12704263 - 12704336
Alignment:
Q  136 ttaaatgtataaatatgcttgagtcttctcatcttttgagctagcttttg-agaagatccaaacctatttaaca 208  Q
    ||||||||||||||||| ||||||    |||||||||| ||||||||||| | |||||||||||||||||||||    
T  12704263 ttaaatgtataaatatgtttgagtaccttcatcttttgtgctagcttttggataagatccaaacctatttaaca 12704336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 28883793 - 28883749
Alignment:
Q  65 tgttaaagttagttttgaagttgtttgtggtttgttgttaatccc 109  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||||    
T  28883793 tgttaaagttggttttgaagttgtttgtagtttgttgttagtccc 28883749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 13533156 - 13533103
Alignment:
Q  82 aagttgtttgtggtttgttgttaatcccgcatcgctcatgttctcggactgtta 135  Q
    ||||||||||||||||||||||| |||| |||| |||| |||  ||||||||||    
T  13533156 aagttgtttgtggtttgttgttagtcccacatcactcaggtttccggactgtta 13533103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 13622696 - 13622643
Alignment:
Q  82 aagttgtttgtggtttgttgttaatcccgcatcgctcatgttctcggactgtta 135  Q
    ||||||||||||||||||||||| |||| |||| |||| |||  ||||||||||    
T  13622696 aagttgtttgtggtttgttgttagtcccacatcactcaggtttccggactgtta 13622643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 12704219 - 12704259
Alignment:
Q  79 ttgaagttgtttgtggtttgttgttaatcccgcatcgctca 119  Q
    |||||||||||||| ||||||||||| |||| |||||||||    
T  12704219 ttgaagttgtttgtagtttgttgttagtcccacatcgctca 12704259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 53089961 - 53089866
Alignment:
Q  14 agattgtgatatgagaattggactcaggcccacgccagacgtgaaggtgggtgttaaagttagttttgaagttgtttgtggtttgttgttaatccc 109  Q
    ||||||| || |||||||||| | ||||||||||| ||| |||| |||| ||||| ||| ||||||||||||||  ||| ||||||||||| ||||    
T  53089961 agattgtaatgtgagaattgggcccaggcccacgctagaggtgagggtgtgtgttgaaggtagttttgaagttgcatgtagtttgttgttagtccc 53089866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 23564507 - 23564441
Alignment:
Q  34 gactcaggcccacgccagacgtgaaggtgggtgttaaagttagttttgaagttgtttgtggtttgtt 100  Q
    ||||||||||||||| || ||||| |||||||||  |||||| |||||||||||||||| |||||||    
T  23564507 gactcaggcccacgctaggcgtgagggtgggtgtggaagttaattttgaagttgtttgtagtttgtt 23564441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 19680649 - 19680584
Alignment:
Q  39 aggcccacgccagacgtgaaggtgggtgttaaagttagttttgaagttgtttgtggtttgttgtta 104  Q
    |||||||||| || ||||| |||||||||||||||| ||||| ||||| ||||| |||||||||||    
T  19680649 aggcccacgctaggcgtgagggtgggtgttaaagttggttttaaagttatttgtagtttgttgtta 19680584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 36165414 - 36165337
Alignment:
Q  27 agaattggactcaggcccacgccagacgtgaaggtgggtgttaaagttagttttgaagttgtttgtggtttgttgtta 104  Q
    ||||||||||||| |||||||| || ||||| |||||||||| |||||  |||| ||||||||| | |||||||||||    
T  36165414 agaattggactcaagcccacgctaggcgtgagggtgggtgttgaagttgattttaaagttgtttttagtttgttgtta 36165337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 23566694 - 23566635
Alignment:
Q  29 aattggactcaggcccacgccagacgtgaaggtgggtgttaaagttagttttgaagttgt 88  Q
    |||||||||||||||||||| || ||||| ||||| |||| ||||| |||||||||||||    
T  23566694 aattggactcaggcccacgctaggcgtgagggtggatgttgaagttggttttgaagttgt 23566635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 36165845 - 36165765
Alignment:
Q  29 aattggactcaggcccacgccagacgtgaaggtgggtgttaaagttagttttgaagttgtttgtggtttgttgttaatccc 109  Q
    |||||||| | | ||||||| || ||||| |||||| ||| ||| | ||||||||||||||||| ||||||||||| ||||    
T  36165845 aattggacccggacccacgctaggcgtgagggtgggcgttgaaggttgttttgaagttgtttgtagtttgttgttagtccc 36165765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 11784979 - 11785034
Alignment:
Q  79 ttgaagttgtttgtggtttgttgttaatcccgcatcgctcatgttctcggactgtt 134  Q
    |||||||||||||| ||||||||||| |||| |||  |||| ||||||||||||||    
T  11784979 ttgaagttgtttgtagtttgttgttagtcccacattactcaggttctcggactgtt 11785034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 1460382 - 1460427
Alignment:
Q  55 tgaaggtgggtgttaaagttagttttgaagttgtttgtggtttgtt 100  Q
    ||||| |||||||| ||||| ||||||||||||||||| |||||||    
T  1460382 tgaagatgggtgttcaagttggttttgaagttgtttgtagtttgtt 1460427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 9928893 - 9928852
Alignment:
Q  65 tgttaaagttagttttgaagttgtttgtggtttgttgttaat 106  Q
    |||| ||||||||||||||||||||||| ||||||| |||||    
T  9928893 tgttgaagttagttttgaagttgtttgtagtttgttattaat 9928852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 19680388 - 19680320
Alignment:
Q  141 tgtataaatatgcttgagtcttctcatcttttgagctagctttt--gagaagatccaaacctatttaac 207  Q
    ||||||||||||||||||||  ||| |||||||||||| |||||  || ||||||||| | ||||||||    
T  19680388 tgtataaatatgcttgagtcccctcctcttttgagctaacttttgggataagatccaagcatatttaac 19680320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 55240639 - 55240703
Alignment:
Q  143 tataaatatgcttgagtcttctcatcttttgagctagcttttgaga--agatccaaacctattta 205  Q
    |||||||||||||||||   |||||||||||||| |||||||| ||  ||||||||| |||||||    
T  55240639 tataaatatgcttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 55240703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 36165599 - 36165567
Alignment:
Q  60 gtgggtgttaaagttagttttgaagttgtttgt 92  Q
    ||||||||| |||||||||||||||||||||||    
T  36165599 gtgggtgttgaagttagttttgaagttgtttgt 36165567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 8745831 - 8745761
Alignment:
Q  23 tatgagaattggactcaggcccacgccagacgtgaaggtgggtgttaaagttagttttgaagttgtttgtg 93  Q
    |||| |||||||||||||| |||||| || | ||| |||| ||||||||||| ||||||||||||||||||    
T  8745831 tatgtgaattggactcagggccacgctaggcatgagggtgagtgttaaagttggttttgaagttgtttgtg 8745761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 5473260 - 5473307
Alignment:
Q  53 cgtgaaggtgggtgttaaagttagttttgaagttgtttgtggtttgtt 100  Q
    |||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  5473260 cgtgaaggtgggtgttgaagttggttttgaagttgtttgtagtttgtt 5473307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 35035172 - 35035111
Alignment:
Q  29 aattggactcaggcccacgccagacgtgaaggtgggtgttaaagttagttttgaagttgttt 90  Q
    ||||||||  |||||||||| ||||| || |||||||||| |||||  ||||||||||||||    
T  35035172 aattggacctaggcccacgctagacgcgagggtgggtgttgaagttgattttgaagttgttt 35035111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 30130850 - 30130781
Alignment:
Q  141 tgtataaatatgcttgagtcttctcatcttttgagctagcttttgaga--agatccaaacctatttaaca 208  Q
    ||||||||||||||||||| |  ||||| |||||||||| ||||| ||  ||||||||||||||||||||    
T  30130850 tgtataaatatgcttgagtatcttcatcatttgagctagtttttgggatgagatccaaacctatttaaca 30130781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 20982276 - 20982191
Alignment:
Q  16 attgtgatatgagaattggactcaggcccacgccagacgtga-aggtgggtgttaaagttagttttgaagttgtttgtggtttgtt 100  Q
    ||||| ||||| |||||||||||||||||| || || |||||  |||||||||| ||||| ||||| || |||||||| |||||||    
T  20982276 attgtaatatgggaattggactcaggcccaagctagccgtgaggggtgggtgttgaagttggttttaaaattgtttgtagtttgtt 20982191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 20491029 - 20491108
Alignment:
Q  28 gaattggactcaggcccacgccagacgtgaaggtgggtgttaaagttagttttgaagttgtttgtggtttgttgttaatc 107  Q
    ||||||||  ||||||||| | |||||||| ||||||| || ||||| ||||||||||| ||| | ||||||| ||||||    
T  20491029 gaattggatccaggcccacactagacgtgagggtgggtattgaagttggttttgaagttttttttagtttgttattaatc 20491108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 30135571 - 30135501
Alignment:
Q  140 atgtataaatatgcttgagtcttctcatcttttgagctagcttttgaga--agatccaaacctatttaaca 208  Q
    ||||||||||||||||||||   |||||| ||||||||| |||||| ||  |||||||| |||||||||||    
T  30135571 atgtataaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaaca 30135501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 30141700 - 30141630
Alignment:
Q  140 atgtataaatatgcttgagtcttctcatcttttgagctagcttttgaga--agatccaaacctatttaaca 208  Q
    ||||||||||||||||||||   |||||| ||||||||| |||||| ||  |||||||| |||||||||||    
T  30141700 atgtataaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaaca 30141630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 30145122 - 30145052
Alignment:
Q  140 atgtataaatatgcttgagtcttctcatcttttgagctagcttttgaga--agatccaaacctatttaaca 208  Q
    ||||||||||||||||||||   |||||| ||||||||| |||||| ||  |||||||| |||||||||||    
T  30145122 atgtataaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaaca 30145052  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 20995655 - 20995705
Alignment:
Q  40 ggcccacgccagacgtgaaggtgggtgttaaagttagttttgaagttgttt 90  Q
    ||||||||  || ||||| |||||||||| |||||||||||||||||||||    
T  20995655 ggcccacgttaggcgtgagggtgggtgttgaagttagttttgaagttgttt 20995705  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 20982760 - 20982832
Alignment:
Q  28 gaattggactcaggcccacgccagacgtgaaggtgggtgttaaagttagttttgaagttgtttgtggtttgtt 100  Q
    ||||| ||| ||||| ||||| ||  |||| ||||| |||| ||||||||||| ||||||||||| |||||||    
T  20982760 gaattagacccaggcgcacgctaggagtgagggtggatgttgaagttagttttaaagttgtttgtagtttgtt 20982832  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 43829773 - 43829621
Alignment:
Q  31 ttggactcaggcccacgccagacgtgaaggtgggtgttaaagttagttttgaagttgtttgtggtttgttgttaatcccgcatcgctcatg-ttctcgga 129  Q
    ||||| ||||||||||   |||||||| |||||||||| ||||| |||||||||||  |||| |||||||  || |||| ||| | ||| | ||| ||||    
T  43829773 ttggattcaggcccacattagacgtgagggtgggtgttgaagttggttttgaagttccttgtagtttgtttctagtcccacattgttcaggattcccgga 43829674  T
Q  130 ctgttattaaatgtataaatatgcttgagtcttctcatcttttgagctagcttttg 185  Q
    |||   || | |||||||||||| |||||| | |||||  ||||||||||||||||    
T  43829673 ctg---ttgagtgtataaatatgtttgagtatcctcattctttgagctagcttttg 43829621  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 10742172 - 10742228
Alignment:
Q  53 cgtgaaggtgggtgttaaagttagttttgaagttgtttgtggtttgttgttaatccc 109  Q
    ||||| |||| ||||| |||||||||||||||||||||||  |||||| || |||||    
T  10742172 cgtgagggtgagtgttgaagttagttttgaagttgtttgtattttgttatttatccc 10742228  T

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