View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_39 (Length: 463)
Name: NF18178_low_39
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 7 - 444
Target Start/End: Original strand, 45373883 - 45374320
Alignment:
| Q |
7 |
gagagatgaaagcgattagtagacgaagtacatagcatgtactaattaacaattattgaaagtatagtaagcattatgcaaagtttgcaaactattctga |
106 |
Q |
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| T |
45373883 |
gagaaatgaaagcgattagtagacgaagtacatagcatgtactaattaacaattattgaaagtatagtaagcattatgcaaagtttgcaaactattatga |
45373982 |
T |
|
| Q |
107 |
ggataaaatttaccagttgcaacttgcaagttgcattctcgataagttaacttaaactcaatgatttttgacacaagatttggcaacatattttcataaa |
206 |
Q |
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| T |
45373983 |
ggataaaatttaccagttgcaacttgcaagttgcattctcgataagttaacttaaacttaatgatttttgacacaagatttggcaacatattttcataaa |
45374082 |
T |
|
| Q |
207 |
gtttgaaaactatgtgagctgcattagatgtcaaagatgcagtgcagcgatcccaaataactttcaacaacctaaccaacaactgaagaagtaggtttat |
306 |
Q |
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| T |
45374083 |
gtttgaaaactatgtgagttgcattagatgtcaaagatgcagtgcagcgatcccaaataactttcaacaaccgaaccaacaactgaagaagtaggtttat |
45374182 |
T |
|
| Q |
307 |
gaaacttggaattggcctttgtgaagatttgtatgccagaagaaagataatcagtaaaatcatgaaataacacaaatgatataaggaagcctctattagg |
406 |
Q |
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| T |
45374183 |
gaaacttggaattggcctttgtgaagatttgtatgccagaagaaagataatcggtaaaatcatgaaataacacaaatgatataaggaagcctctattagg |
45374282 |
T |
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| Q |
407 |
atttcttattacaatattagttgccgagtggcatcatt |
444 |
Q |
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| T |
45374283 |
atttcttattacaatattagttgccgagtggcatcatt |
45374320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 10 - 430
Target Start/End: Original strand, 45389068 - 45389464
Alignment:
| Q |
10 |
agatgaaagcgattagtagacgaagtacatagcatgtactaattaacaattattgaaagtatagtaagcattatgcaaagtttgcaaactattctgagga |
109 |
Q |
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||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
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| T |
45389068 |
agatgaaagcgattaatagacggagtacatagcgtgtactaattaacaattattgaaagtatagtaagcattgagcaaa---------ctattgtgaggc |
45389158 |
T |
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| Q |
110 |
taaaatttaccagttgcaacttgcaagttgcattctcgataagttaacttaaactcaatgatttttgacacaagatttggcaacatattttcataaagtt |
209 |
Q |
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| T |
45389159 |
taaaatttactagttgcaacttgcaagttgcattctcgataagtcaacttaagctcaataatt---gacacaagatttggcaacatattttcataaagtt |
45389255 |
T |
|
| Q |
210 |
tgaaaactatgtgagctgcattagatgtcaaagatgcagtgcagcgatcccaaataactttcaacaacctaaccaacaactgaagaagtaggtttatgaa |
309 |
Q |
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| T |
45389256 |
tgaaaactatgttggctgcatttgatgtcaaagatgcagtgcagcgatcccaaataacttt------------caacaactgaagaagtaggtttatgaa |
45389343 |
T |
|
| Q |
310 |
acttggaattggcctttgtgaagatttgtatgccagaagaaagataatcagtaaaatcatgaaataacacaaatgatataaggaagcctctattaggatt |
409 |
Q |
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||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45389344 |
actcggaatcggcctttgtgaagatttgtatgccagaagaaagataatcagtaaaatcatgaaataacacaaatgatataaggaagccttgattaggatt |
45389443 |
T |
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