View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_40 (Length: 463)
Name: NF18178_low_40
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 52671742 - 52671996
Alignment:
| Q |
18 |
caacaggtgtgagtgtgtgaacctattgtcacacattttctgcaagctatttggagccttgcgaagttaatctaaaaaatgggaaatcaaagagagaaaa |
117 |
Q |
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| T |
52671742 |
caacaggtgtgagtgtgtgaacctattgtcacacattttctgcaagctatt-ggagccttgcgaagttaatctaaaaaatgggaaaccaaagagagaaaa |
52671840 |
T |
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| Q |
118 |
ggaattgagaacagagcaagaaatggttacctgacatttgagatggaaataaatctataaaaggtattcctcttgaaaaaagtgatacgtatcggttaat |
217 |
Q |
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| T |
52671841 |
ggaattgagaaaagaacaagaaatggttacctgacatttgagatggaaataaatctataaaaggtattcctcttgaaaaaagtgatacgtatcggttaat |
52671940 |
T |
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| Q |
218 |
atgcctaaaaaattgccaaaaagatgaaggaaggattgatgaatattcatattttc |
273 |
Q |
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| T |
52671941 |
atgcctaaaaaattgccaaaaagatgaaggaaggattgatgaatattcatattttc |
52671996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 300 - 387
Target Start/End: Original strand, 52672022 - 52672108
Alignment:
| Q |
300 |
tatgaatgaaatcgtacattcaataaaaactcatttagattccaatcttccacaaactactaccaaaaaataattataactacaacgc |
387 |
Q |
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| T |
52672022 |
tatgaatgaaatcgtacattcaataaaa-ctcatttagattccaatcttccacaaactactaccaaaaaataattataactgcaacgc |
52672108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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