View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_41 (Length: 458)
Name: NF18178_low_41
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 4 - 442
Target Start/End: Complemental strand, 39592460 - 39592021
Alignment:
| Q |
4 |
aacaaaccaaaaaatagaacgagaagttttatagtaaaccctttatattattcactctttaatgtgtatcaatataatttgaggtttttatgatttttaa |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39592460 |
aacaaaccaaaaaatagaacgagaagttttatagtaaaccctttatattattcactctttaatgtgtatcagtataatttgaggtttttatgatttttaa |
39592361 |
T |
|
| Q |
104 |
gctagcagattggtgaaattgattactgcactattaaatgatctttcatgcgaatgagctgtacagaagcactcacaatactataaaaatggagatcttg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39592360 |
gctagcagattggtgaaattgattactgcactattaaatgatctttcatgcgaatgagctgtacagaagcactcacaatactataaaaatagagatcttg |
39592261 |
T |
|
| Q |
204 |
ttttatccaagattaaagagaaactcaccttccaatcacatgttacttactttt-ccatctgtttcatatcaccatccatataccttttttagttgaact |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39592260 |
ttttatccaagattaaagagaaactcaccttccaatcacatgttacttacttttcccatctgtttcatatcaccatccatataccttttttagttgaact |
39592161 |
T |
|
| Q |
303 |
cactagtctcttgcctttgtaacaacctacctcagaaaaggtgcagtgatgtgagacataacaacaacaacaggacgctatgaaggaacccacctttttc |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39592160 |
cactagtctcttgcctttgtaacaacctacctcagaaaaggtgcagtgatgtgagacataacaacaacaacaggacgctatgaaggaacccacctttttc |
39592061 |
T |
|
| Q |
403 |
aaaaataatagtcatacagttatctaactctactataaag |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
39592060 |
aaaaataatagtcatacagttatctaactctactataaag |
39592021 |
T |
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