View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_low_42 (Length: 457)

Name: NF18178_low_42
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_low_42
NF18178_low_42
[»] chr6 (12 HSPs)
chr6 (7-443)||(28934833-28935269)
chr6 (132-219)||(12102274-12102361)
chr6 (29-87)||(11936185-11936243)
chr6 (29-87)||(11948165-11948223)
chr6 (272-329)||(10579881-10579938)
chr6 (132-220)||(11936279-11936367)
chr6 (132-220)||(11948259-11948347)
chr6 (130-220)||(6423224-6423314)
chr6 (143-220)||(6402867-6402944)
chr6 (272-313)||(6415880-6415921)
chr6 (155-220)||(6585264-6585329)
chr6 (130-198)||(6432190-6432258)
[»] chr4 (25 HSPs)
chr4 (150-343)||(553363-553556)
chr4 (144-220)||(1548440-1548516)
chr4 (272-343)||(12121601-12121672)
chr4 (130-213)||(1519144-1519227)
chr4 (130-220)||(8184032-8184122)
chr4 (132-221)||(570357-570446)
chr4 (150-199)||(1600447-1600496)
chr4 (272-322)||(1489505-1489555)
chr4 (272-322)||(1508147-1508197)
chr4 (155-229)||(7225910-7225984)
chr4 (150-220)||(8187113-8187183)
chr4 (130-200)||(12116577-12116647)
chr4 (26-87)||(644961-645022)
chr4 (272-392)||(55505249-55505369)
chr4 (137-180)||(659756-659799)
chr4 (146-229)||(55505126-55505209)
chr4 (29-91)||(553606-553668)
chr4 (272-322)||(644736-644786)
chr4 (272-322)||(1513548-1513598)
chr4 (272-322)||(1537911-1537961)
chr4 (130-220)||(7307867-7307957)
chr4 (272-306)||(8184174-8184208)
chr4 (272-321)||(546819-546868)
chr4 (130-199)||(12121459-12121528)
chr4 (272-340)||(1552914-1552982)
[»] chr8 (8 HSPs)
chr8 (130-221)||(18315275-18315366)
chr8 (130-221)||(17636403-17636494)
chr8 (155-220)||(17628041-17628106)
chr8 (130-220)||(27922515-27922605)
chr8 (29-87)||(28246205-28246263)
chr8 (132-221)||(21235564-21235653)
chr8 (272-316)||(44736446-44736490)
chr8 (137-199)||(34936172-34936234)
[»] chr5 (4 HSPs)
chr5 (137-229)||(41901544-41901636)
chr5 (130-220)||(32267482-32267572)
chr5 (272-331)||(37937783-37937842)
chr5 (272-331)||(38267700-38267759)
[»] chr3 (3 HSPs)
chr3 (272-388)||(51113925-51114041)
chr3 (34-87)||(1657378-1657431)
chr3 (130-193)||(51120895-51120958)
[»] chr2 (3 HSPs)
chr2 (145-198)||(32785789-32785842)
chr2 (272-322)||(45245229-45245279)
chr2 (137-221)||(45245094-45245178)
[»] chr1 (3 HSPs)
chr1 (272-306)||(9580990-9581024)
chr1 (274-316)||(43634090-43634132)
chr1 (161-229)||(7554486-7554554)
[»] chr7 (1 HSPs)
chr7 (389-426)||(25645259-25645296)


Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 7 - 443
Target Start/End: Complemental strand, 28935269 - 28934833
Alignment:
Q  7 tgatatgaaccattgtgatgacgtatgtgaagaaggtattgtttatgttttgatgacatgtcttaacattagacatttgaacttagcctactgtttaggt 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28935269 tgatttgaaccattgtgatgacgtatgtgaagaaggtattgtttatgttttgatgaaatgtcttaacattagacatttgaacttagcctactgtttaggt 28935170  T
Q  107 ttgaaactgaagctaaatggattaatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtga 206  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28935169 ttgaaactgaacctaaatggattaatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtga 28935070  T
Q  207 tttcaaagagttgtcatggacttatgcgcctgttgctgttaaactgcgatcgtgttacnnnnnnnggagtgaagcatgtggtagaaaattgcacacaact 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       |||||||||||||||||||||||||||||||||||    
T  28935069 tttcaaagagttgtcatggacttatgcgcctgttgctgttaaactgcgatagtgttacaaaaaaaggagtgaagcatgtggtagaaaattgcacacaact 28934970  T
Q  307 aagagagatctatttggatgattgtgttaaagtgcatcctaatttcgtaacctcactagtattaccaaggtcatcattgagaaagaatcttgaacctatc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28934969 aagagagatctatttggatgattgtgttaaagtgcatcctaatttggtagcctcactagtattaccaaggtcatcattgagaaagaatcttgaacctatc 28934870  T
Q  407 actgattttatgccttcttttaataacatattggttt 443  Q
    |||||||||||||||||||||||||||||||||||||    
T  28934869 actgattttatgccttcttttaataacatattggttt 28934833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 12102361 - 12102274
Alignment:
Q  132 tgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttg 219  Q
    |||| ||||| |||||| |||| |||||||||||||||||||||||| |||||||  | |||| ||||  | ||||||||||||||||    
T  12102361 tgaactttgaagttcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaactctatctgatttcaaagagttg 12102274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 11936185 - 11936243
Alignment:
Q  29 gtatgtgaagaaggtattgtttatgttttgatgacatgtcttaacattagacatttgaa 87  Q
    |||| |||||||||||||||| ||||||| |||| ||||  ||||||||||||||||||    
T  11936185 gtatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 11936243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 11948165 - 11948223
Alignment:
Q  29 gtatgtgaagaaggtattgtttatgttttgatgacatgtcttaacattagacatttgaa 87  Q
    |||| |||||||||||||||| ||||||| |||| ||||  ||||||||||||||||||    
T  11948165 gtatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 11948223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 10579881 - 10579938
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgatt 329  Q
    ||||| || |||||||||||||| ||||||||||| |||||||| || ||||||||||    
T  10579881 ggagttaaacatgtggtagaaaactgcacacaacttagagagatttacttggatgatt 10579938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 11936279 - 11936367
Alignment:
Q  132 tgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 220  Q
    |||| ||||| |||||| |||| ||||||||| ||||||||  |||||||||||||||| || |||||  |  ||| ||||||||||||    
T  11936279 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgt 11936367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 11948259 - 11948347
Alignment:
Q  132 tgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 220  Q
    |||| ||||| |||||| |||| ||||||||| ||||||||  |||||||||||||||| || |||||  |  ||| ||||||||||||    
T  11948259 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgt 11948347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 6423314 - 6423224
Alignment:
Q  130 aatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 220  Q
    |||||| ||| | |||||| | || |||||||||||||||||| |||||||||||  |||| || |||||  || ||| ||||||||||||    
T  6423314 aatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgt 6423224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 6402944 - 6402867
Alignment:
Q  143 gttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 220  Q
    ||||||||||| || ||||||||||||||| |||| |  ||||| |||||| |||||  |||||| ||||||| ||||    
T  6402944 gttccccaactagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgt 6402867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 6415921 - 6415880
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaactaagagag 313  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  6415921 ggagtgaaacatgtggtagagaactgcacacaactaagagag 6415880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 6585264 - 6585329
Alignment:
Q  155 gaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 220  Q
    ||||| |||||||||||| ||||||  ||||| |||||| |||||  |||||| ||||||||||||    
T  6585264 gaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgt 6585329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 6432258 - 6432190
Alignment:
Q  130 aatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcact 198  Q
    |||||| ||||| |||||| | ||  ||||||||||||||||| ||||||| ||||| |||||| ||||    
T  6432258 aatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacact 6432190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 150 - 343
Target Start/End: Complemental strand, 553556 - 553363
Alignment:
Q  150 aactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtcatggacttatgcgcctgttgctgttaaa 249  Q
    |||| ||||||||||||||||||  |||||||||||| ||||||||||| | |||||||||||||||||||  ||| ||| |||  |||||| ||||  |    
T  553556 aactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggcttttgcaactgttgttgtttta 553457  T
Q  250 ctgcgatcgtgttacnnnnnnnggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcat 343  Q
     ||   |  ||| ||       |||||||| |||||||||||||| ||||||||||| ||||||||| ||||||  | ||||| ||||||||||    
T  553456 ttgtagtgatgtcacagataaaggagtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttggggggttgtgataaagtgcat 553363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 1548440 - 1548516
Alignment:
Q  144 ttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 220  Q
    ||||| |||| ||||||||||||||||||||||||||  |||| |||||| |||||| |||||| ||||||||||||    
T  1548440 ttcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgt 1548516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 272 - 343
Target Start/End: Original strand, 12121601 - 12121672
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcat 343  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||| |  ||||| || ||||||||    
T  12121601 ggagtgaagcatgtggtagaaaaatgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcat 12121672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 1519144 - 1519227
Alignment:
Q  130 aatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaa 213  Q
    |||||| ||||| |||||| |||| |||||||||||||||||||||||||| ||||| ||  ||||||||  |||||| |||||    
T  1519144 aatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 1519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 130 - 220
Target Start/End: Original strand, 8184032 - 8184122
Alignment:
Q  130 aatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 220  Q
    |||||| ||||| |||||  |||| |||||||||||||||||||||||||||||||| |||  |||||||  ||  || ||||||||||||    
T  8184032 aatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgt 8184122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 570446 - 570357
Alignment:
Q  132 tgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtc 221  Q
    |||| ||||| |||| | ||||||||||||||||||||||| ||||| |||||||  | |||| ||||  | ||||||||||||||||||    
T  570446 tgaactttgaagttctcaaactcgaggtgttgaacttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtc 570357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 1600496 - 1600447
Alignment:
Q  150 aactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactc 199  Q
    |||| |||||||||||||||||| ||||||| ||||||||||||||||||    
T  1600496 aactggaggtgttgaacttgtcatatacaagggttgacgatgaagcactc 1600447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 1489505 - 1489555
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 322  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||||| |||||    
T  1489505 ggagtgaagcatgtgctagaaaaatgcgcacaactaagagagatcaatttg 1489555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 1508147 - 1508197
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 322  Q
    ||||||||||||| | ||||||| ||||||||||||||||||||| |||||    
T  1508147 ggagtgaagcatgcgctagaaaaatgcacacaactaagagagatcaatttg 1508197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 7225910 - 7225984
Alignment:
Q  155 gaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtcatggactt 229  Q
    ||||| |||||||||||||||||||||||||| ||  ||| |||  ||||||| ||||||||||||  |||||||    
T  7225910 gaggtcttgaacttgtcacatacaagagttgatgacaaaggacttcgtgtgatatcaaagagttgttgtggactt 7225984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 8187113 - 8187183
Alignment:
Q  150 aactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 220  Q
    |||| |||||||||||||||||||||||||||||||| ||| || ||||   ||  |||||||||||||||    
T  8187113 aactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgt 8187183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 12116577 - 12116647
Alignment:
Q  130 aatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactca 200  Q
    |||||| |||||||||||  |  | |||||||||||||||||||||||||| ||||| |||||| ||||||    
T  12116577 aatgaactttgatgttccaaatttagaggtgttgaacttgtcacatacaagtgttgatgatgaatcactca 12116647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 645022 - 644961
Alignment:
Q  26 gacgtatgtgaagaaggtattgtttatgttttgatgacatgtcttaacattagacatttgaa 87  Q
    ||||||| |||||||||||| ||| ||||||| |||| ||||  ||||||||||||||||||    
T  645022 gacgtatctgaagaaggtatggttcatgttttaatgatatgttgtaacattagacatttgaa 644961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 392
Target Start/End: Original strand, 55505249 - 55505369
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcatcctaatttcgtaacctcactagtattac 371  Q
    |||||||| || ||| ||||||| ||||||||||||||||||||| | ||| | | ||||| |||||||||| ||| | | ||   |||| | |||||      
T  55505249 ggagtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatactagtgttgttgactcaatggtatttt 55505348  T
Q  372 caaggtcatcattgagaaaga 392  Q
    ||||| |||||||||||||||    
T  55505349 caaggccatcattgagaaaga 55505369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 659799 - 659756
Alignment:
Q  137 tttgatgttccccaactcgaggtgttgaacttgtcacatacaag 180  Q
    ||||| |||||| |||| ||||||||||||||||||||||||||    
T  659799 tttgaagttcccaaactagaggtgttgaacttgtcacatacaag 659756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 55505126 - 55505209
Alignment:
Q  146 ccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtcatggactt 229  Q
    |||||||| |||||||||||||||||| ||||||  |||||||||| | ||||   |||||  ||||||| ||||| |||||||    
T  55505126 ccccaactagaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaagaattgtcgtggactt 55505209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 553668 - 553606
Alignment:
Q  29 gtatgtgaagaaggtattgtttatgttttgatgacatgtcttaacattagacatttgaactta 91  Q
    |||| |||||||| | ||||| ||||||| | |||||||  ||||||||||||||||||||||    
T  553668 gtatctgaagaagctgttgttcatgttttaaggacatgttgtaacattagacatttgaactta 553606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 644786 - 644736
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 322  Q
    |||||||| |||||||| ||||| ||||||||||| ||||||||| |||||    
T  644786 ggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttg 644736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 1513548 - 1513598
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 322  Q
    |||||||||| |||| ||||||| ||||||||||| ||||||||| |||||    
T  1513548 ggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttg 1513598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 1537911 - 1537961
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 322  Q
    ||||||||| ||||| ||||||| ||||| ||||||||||||||| |||||    
T  1537911 ggagtgaagtatgtgctagaaaaatgcactcaactaagagagatcaatttg 1537961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 7307957 - 7307867
Alignment:
Q  130 aatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 220  Q
    |||||| ||| | |||||| || | ||||| |||||||||||| |||||  |||||| |||||||||||  || |||| ||||||||||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgt 7307867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 306
Target Start/End: Original strand, 8184174 - 8184208
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaact 306  Q
    ||||||||||||||| |||||||||||||||||||    
T  8184174 ggagtgaagcatgtgctagaaaattgcacacaact 8184208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 546868 - 546819
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctattt 321  Q
    |||||||| |||||| ||||||| |||||| |||||||||||||| ||||    
T  546868 ggagtgaaacatgtgctagaaaactgcacaaaactaagagagatcaattt 546819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 12121459 - 12121528
Alignment:
Q  130 aatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactc 199  Q
    |||||| ||||| |||||| |||| || ||||||||||||||| ||||||  ||||| |||||| |||||    
T  12121459 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactc 12121528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 1552914 - 1552982
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtg 340  Q
    |||||||||||||| | ||||||||||   ||||||||||||||| ||||| | | |||| ||||||||    
T  1552914 ggagtgaagcatgtcggagaaaattgcttgcaactaagagagatcaatttgaaaggttgtcttaaagtg 1552982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 18315275 - 18315366
Alignment:
Q  130 aatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtc 221  Q
    |||||| ||| | |||||| |||| ||||||||||||||||||||||||| |||||| ||||||||||||  |||||| |||||||||||||    
T  18315275 aatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtc 18315366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 17636403 - 17636494
Alignment:
Q  130 aatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtc 221  Q
    |||||| ||||| |||||| || | |||||||||||||||||||| ||| ||||||||||||||||| |   |||||| |||||||||||||    
T  17636403 aatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgtc 17636494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 17628041 - 17628106
Alignment:
Q  155 gaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 220  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||| ||||||| ||||||| ||||    
T  17628041 gaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaagaattgt 17628106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 27922605 - 27922515
Alignment:
Q  130 aatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 220  Q
    |||||| ||||| |||||| || | |||||||||||||||||| ||||||  ||||| |||||||||||   | |||| ||||||||||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgt 27922515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 28246205 - 28246263
Alignment:
Q  29 gtatgtgaagaaggtattgtttatgttttgatgacatgtcttaacattagacatttgaa 87  Q
    |||| |||||||||||||||| ||||||| |||| ||||  ||||||||||||||||||    
T  28246205 gtatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 28246263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 21235653 - 21235564
Alignment:
Q  132 tgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtc 221  Q
    |||| ||||| |||||| |||| |||||||||||||||||| ||||| |||||||  | |||| ||||  | ||||||||||||| ||||    
T  21235653 tgaactttgaagttcccaaactggaggtgttgaacttgtcatatacaggagttgataacgaagaactctatttgatttcaaagagctgtc 21235564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 44736490 - 44736446
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatc 316  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||||    
T  44736490 ggagtgaaacatgttgtagaaaattgtacacaactaagagagatc 44736446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 34936172 - 34936234
Alignment:
Q  137 tttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactc 199  Q
    |||||||||||  |||| ||||||||| |||||||| ||||||||||||| ||| || |||||    
T  34936172 tttgatgttccaaaactagaggtgttggacttgtcatatacaagagttgatgataaaacactc 34936234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 41901544 - 41901636
Alignment:
Q  137 tttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtcatggactt 229  Q
    ||||| |||||| |||| |||||||||||||||||| |||||| |||||| |||||||||||   | |||| ||||||||||||  |||||||    
T  41901544 tttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggactt 41901636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 32267572 - 32267482
Alignment:
Q  130 aatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 220  Q
    |||||| ||||| |||||| || | ||||| |||||||||||||| |||| |||||| |||||||||||   | |||| ||||||||||||    
T  32267572 aatgaactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgt 32267482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 37937842 - 37937783
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgt 331  Q
    ||||||| |||||||||  ||||||||||  |||| ||||||||| ||||||||||||||    
T  37937842 ggagtgatgcatgtggtcaaaaattgcaccaaactcagagagatcaatttggatgattgt 37937783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 38267700 - 38267759
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgt 331  Q
    ||||||| |||||||||  |||| |||||| |||| ||||||||| ||||||||||||||    
T  38267700 ggagtgatgcatgtggtcaaaaactgcacaaaactcagagagatcaatttggatgattgt 38267759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 388
Target Start/End: Original strand, 51113925 - 51114041
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcatcctaatttcgtaacctcactagtattac 371  Q
    ||||||||||||||||||||||| |||||| |||||||||||||  ||||  | | |||| ||||||||||| ||||||| ||  ||||| |  ||||      
T  51113925 ggagtgaagcatgtggtagaaaaatgcacaaaactaagagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctcaatgatatttt 51114024  T
Q  372 caaggtcatcattgaga 388  Q
    ||||| |||||||||||    
T  51114025 caaggccatcattgaga 51114041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 1657431 - 1657378
Alignment:
Q  34 tgaagaaggtattgtttatgttttgatgacatgtcttaacattagacatttgaa 87  Q
    |||||||||||||||| ||||||| |||| ||||  ||||||||||||||||||    
T  1657431 tgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 1657378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 51120895 - 51120958
Alignment:
Q  130 aatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaa 193  Q
    |||||| ||||| |||| | || | ||||||||||||||||| |||||||||||||| ||||||    
T  51120895 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaa 51120958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 32785789 - 32785842
Alignment:
Q  145 tccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcact 198  Q
    |||| |||| ||||||||||||||||||||||||||| |||| |||||||||||    
T  32785789 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcact 32785842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 45245229 - 45245279
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 322  Q
    |||||||| |||||||||||||||||||||||||| | ||||||| |||||    
T  45245229 ggagtgaaacatgtggtagaaaattgcacacaacttacagagatcaatttg 45245279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 45245094 - 45245178
Alignment:
Q  137 tttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtc 221  Q
    ||||| |||||  |||| ||||||||||| |||||| | ||||  ||||| |||||| |||||  |||||| |||||||||||||    
T  45245094 tttgaagttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtc 45245178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 306
Target Start/End: Complemental strand, 9581024 - 9580990
Alignment:
Q  272 ggagtgaagcatgtggtagaaaattgcacacaact 306  Q
    |||||||||| ||||||||||||||||||||||||    
T  9581024 ggagtgaagcgtgtggtagaaaattgcacacaact 9580990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 43634132 - 43634090
Alignment:
Q  274 agtgaagcatgtggtagaaaattgcacacaactaagagagatc 316  Q
    ||||||||| ||| |||||||||||| ||||||||||||||||    
T  43634132 agtgaagcacgtgttagaaaattgcagacaactaagagagatc 43634090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 7554554 - 7554486
Alignment:
Q  161 ttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtcatggactt 229  Q
    |||||||| ||| ||||||| ||||| ||||||||||||  | |||| ||||||||||||  |||||||    
T  7554554 ttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggactt 7554486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 25645259 - 25645296
Alignment:
Q  389 aagaatcttgaacctatcactgattttatgccttcttt 426  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  25645259 aagaatcttgaacctatcactgattctatgtcttcttt 25645296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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