View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_low_43 (Length: 456)
Name: NF18178_low_43
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_43 |
 | |
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| [»] scaffold0194 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 385
Target Start/End: Original strand, 20184873 - 20185247
Alignment:
| Q |
14 |
gttttctcatcgctttctcatcatcatctgccgtcgttttactatctttttctcatggaattttcgtttccacatgaaagctgatgccttggcctctctt |
113 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20184873 |
gttttctcatcgctttctcatcatcatttgtcgtcattttactatctttttctcatggaattttcgtttccacatgaaagctgatgccttggcctctctt |
20184972 |
T |
|
| Q |
114 |
cttctttccaattttaacaacaaccccatcagaaccatggaaaggttgatgttgattttgtttccttttgtgttgtaaggattgaaagggttctcataga |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
20184973 |
cttctttccaattttaacaacaaccccatcagaaccaaggaatggttgatgttgattttatttccttttatgttgtaaggattgaaagggttctcataga |
20185072 |
T |
|
| Q |
214 |
tctgaataaagtattgctggtggtgattttgttttctttttgtgttgtgagaaattgagatttgagtg---gaagaagaagaagaaaaaagtggtttttg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
20185073 |
tctgaataaagtattgctggtggtgattttgttttctttttgtgttgtgggaaattgagatttgagtgaaagaagaagaagaagaaaaaagtggtttttg |
20185172 |
T |
|
| Q |
311 |
ataatttgtgttgtttgttgatgaaagagaaccaagaagagaagaagatgtgaaagaacacatcgttgagttttt |
385 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20185173 |
ataatttgtgttatttgttgatgaaagagaaccaagaagagaagaagatgtgaaagaacacatcgttgagttttt |
20185247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 355
Target Start/End: Complemental strand, 46026613 - 46026465
Alignment:
| Q |
197 |
gaaagggttctcatagatctgaataaagtattgctggtggtgattttgttttctttttgtgttgtgagaaattgagatttgagtggaagaagaagaagaa |
296 |
Q |
| |
|
||||||||||||| |||||||||| |||| ||||||||||||| ||| | |||| ||||||||| ||||||||||||||| | ||||| |||| |
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|
| T |
46026613 |
gaaagggttctcacagatctgaatgaagtgttgctggtggtgactttct----ttttagtgttgtgaaaaattgagatttgagcg--agaag----agaa |
46026524 |
T |
|
| Q |
297 |
aaaagtggtttttgataatttgtgttgtttgttgatgaaagagaaccaagaagagaaga |
355 |
Q |
| |
|
| ||| ||||||||| ||||||| || || || |||||||||||| | |||||||||| |
|
|
| T |
46026523 |
gatagtagtttttgatgatttgtgatgatttttcatgaaagagaacgatgaagagaaga |
46026465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 20185260 - 20185297
Alignment:
| Q |
406 |
ggagtgtgagagtgatagcctcttgtgttcttccacct |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
20185260 |
ggagtgtgagagtgatagcctcttgtgttcttccacct |
20185297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 385
Target Start/End: Complemental strand, 50551041 - 50550677
Alignment:
| Q |
14 |
gttttctcatcgctttctcatcatcatctgccgtcgttttactatctttttctcatggaattttcgtttccacatgaaagctgatgccttg--gcctctc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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|
| T |
50551041 |
gttttctcatcgctttctcatcatcatctgtcgtcgttttactatctttttctcatggaattttcgtttccacatgaaagctgatgccttgtggcctccc |
50550942 |
T |
|
| Q |
112 |
ttcttctttccaattttaacaacaaccccatcagaaccatggaaagg---ttgatgttgattttgtttccttttgtgttgtaaggattgaaagggttctc |
208 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
50550941 |
ttcttctttccaattttaaca------------gaaccatggaaaggaggttgatgttgattttgtttccttttgtgttgtaaagattgaaagggttctc |
50550854 |
T |
|
| Q |
209 |
atagatctgaataaagtattgctggtggtgattttgttttctttttgtgttgtgagaaattgagatttgagtggaagaagaagaagaaaaaagtggtttt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
50550853 |
atagatctgaataaagtattgctggtggtgattttgttttctttttgtgttgtgagaaattgagatttgagtgaaagaagaagaagaagaaagtggtttt |
50550754 |
T |
|
| Q |
309 |
tgataatttgtgttgtttgttgatgaaagagaaccaagaagagaagaagatgtgaaagaacacatcgttgagttttt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50550753 |
tgataatttgtgttgtttgttgatgaaagagaacccataagagaagaagatgtgaaagaacacatcgttgagttttt |
50550677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 60 - 387
Target Start/End: Original strand, 51645425 - 51645754
Alignment:
| Q |
60 |
tttttctcatggaattttcgtttccacatgaaagctgatgccttggcctctcttcttctttccaat------tttaacaacaaccccatcagaaccatgg |
153 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| || ||||| ||||||| ||||||||||| ||||||||||||||||||||||||| || |
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|
| T |
51645425 |
tttttctcatggatttttcgtttccattggaaagccagtgtcttggtctctcttattctttccaatttcaattttaacaacaaccccatcagaaccaagg |
51645524 |
T |
|
| Q |
154 |
aaaggttgatgttgattttgtttccttttgtgttgtaaggattgaaagggttctcatagatctgaataaagtattgctggtggtgattttgttttctttt |
253 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| |
|
|
| T |
51645525 |
aaaggttgacgttgattttgtttccttttgtgttgtaaggattgaaagggttctcatagatctgaataaagtgttgctagtggtgattttgttttc-ttt |
51645623 |
T |
|
| Q |
254 |
tgtgttgtgagaaattgagatttgagtggaagaagaagaagaaaaaagtggtttttgataatttgtgttgtttgttgatgaaagagaaccaagaagagaa |
353 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51645624 |
tgtgctgtgagaaatttagatttgagtgaaagaagaagaag---aaagtgatttttgataatttgtgttgtttgttgatgaaagagaaccaagaagagaa |
51645720 |
T |
|
| Q |
354 |
gaagatgtgaaagaacacatcgttgagtttttat |
387 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||| |
|
|
| T |
51645721 |
gaagctgtggaagaacattcagttgagtttttat |
51645754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 60 - 387
Target Start/End: Original strand, 36220077 - 36220407
Alignment:
| Q |
60 |
tttttctcatggaattttcgtttccacatgaaagctgatgccttggcctctcttcttctttcc------aattttaacaacaaccccatcagaaccatgg |
153 |
Q |
| |
|
||||||||||| | |||||||||||| |||||| || ||||||||||||| |||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
36220077 |
tttttctcatgaatttttcgtttccattggaaagccagtgtcttggcctctcttattctttccaattccaattttaacaacaaccccatcagaaccaagg |
36220176 |
T |
|
| Q |
154 |
aaaggttgatgttgattttgtttccttttgtgttgtaaggattgaaagggttctcatagatctgaat-aaagtattgctggtggtgattttgttttcttt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||| || |
|
|
| T |
36220177 |
aaaggttgatgttgattttgtttccttttgtattgtacggattgaaagggttcttatagatctgaataaaagtggtgctggtggtgtttttgttttc-tt |
36220275 |
T |
|
| Q |
253 |
ttgtgttgtgagaaattgagatttgagtggaagaagaagaagaaaaaagtggtttttgataatttgtgttgtttgttgatgaaagagaaccaagaagaga |
352 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36220276 |
ttgtgttgtgagaaattgagatttgagtgaaagaagaagaag---aaagtggtttttgataatttgtgttgtttgttgatgaaagaaaaccaagaagaga |
36220372 |
T |
|
| Q |
353 |
agaagatgtgaaagaacacatcgttgagtttttat |
387 |
Q |
| |
|
||||| |||| ||||||| | ||||||||||||| |
|
|
| T |
36220373 |
agaagctgtggaagaacatacggttgagtttttat |
36220407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 443
Target Start/End: Complemental strand, 50550654 - 50550617
Alignment:
| Q |
406 |
ggagtgtgagagtgatagcctcttgtgttcttccacct |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50550654 |
ggagtgtgagagtgatagcctcttgtgttcttccacct |
50550617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0194 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 60 - 387
Target Start/End: Original strand, 18699 - 19028
Alignment:
| Q |
60 |
tttttctcatggaattttcgtttccacatgaaagctgatgccttggcctctcttcttctttcc------aattttaacaacaaccccatcagaaccatgg |
153 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| ||| ||||||||||||| |||||||| ||||||||||| |||||||||||||||| || |
|
|
| T |
18699 |
tttttctcatggatttttcgtttccattggaaagccaatgtcttggcctctcttattctttccaattccaattttaacaaaaaccccatcagaaccaagg |
18798 |
T |
|
| Q |
154 |
aaaggttgatgttgattttgtttccttttgtgttgtaaggattgaaagggttctcatagatctgaataaagtattgctggtggtgattttgttttctttt |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
18799 |
aaaggttgatgttgattttgtttccttttgtgttgtaaggattgaaagggttctcatagatctgaataaagtgttgctggtggtgattttgttttc-ttt |
18897 |
T |
|
| Q |
254 |
tgtgttgtgagaaattgagatttgagtggaagaagaagaagaaaaaagtggtttttgataatttgtgttgtttgttgatgaaagagaaccaagaagagaa |
353 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18898 |
tgtgttgtgagaaattgagatttgagtg---aaagaagaagaaaaaagtggtttttaataatttgtgttgtttgttgatgaaagagaaccaagaagagaa |
18994 |
T |
|
| Q |
354 |
gaagatgtgaaagaacacatcgttgagtttttat |
387 |
Q |
| |
|
|||| | || ||||||| || ||||||||||||| |
|
|
| T |
18995 |
gaagctatggaagaacatatagttgagtttttat |
19028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 60 - 387
Target Start/End: Complemental strand, 45597474 - 45597145
Alignment:
| Q |
60 |
tttttctcatggaattttcgtttccacatgaaagctgatgccttggcctctcttcttctttccaatt------ttaacaacaaccccatcagaaccatgg |
153 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| || ||||||||||||| |||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
45597474 |
tttttctcatggatttttcgtttccattggaaagccagtgtcttggcctctcttattctttccaattccaattttaacaacaaccccatcagaaccaagg |
45597375 |
T |
|
| Q |
154 |
aaaggttgatgttgattttgtttccttttgtgttgtaaggattgaaagggttctcatagatctgaataaagtattgctggtggtgattttgttttctttt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
45597374 |
aaaggttgatgttgattttgtttccttttgtgttgtaaggattgaaagggtcctcgtaaatctgaataaagtgttgctggtggtgattttgttttc-ttt |
45597276 |
T |
|
| Q |
254 |
tgtgttgtgagaaattgagatttgagtggaagaagaagaagaaaaaagtggtttttgataatttgtgttgtttgttgatgaaagagaaccaagaagagaa |
353 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
45597275 |
tgtgctgtgagaaattgagatttgagtgaaagaagaagaag---aaagtggtttttgataatttctgttgtttgttgatgaaagagaaccaagaagacaa |
45597179 |
T |
|
| Q |
354 |
gaagatgtgaaagaacacatcgttgagtttttat |
387 |
Q |
| |
|
|||| | || ||||||| | |||||||||||| |
|
|
| T |
45597178 |
gaagctctggaagaacatacatttgagtttttat |
45597145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 355
Target Start/End: Original strand, 588068 - 588216
Alignment:
| Q |
197 |
gaaagggttctcatagatctgaataaagtattgctggtggtgattttgttttctttttgtgttgtgagaaattgagatttgagtggaagaagaagaagaa |
296 |
Q |
| |
|
|||||||||||| | |||||||| ||| ||||||||||||| ||| |||| ||||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
588068 |
gaaagggttctcgcaaatctgaatggagtgttgctggtggtgactttctttt----ttgtgttgtgaaaaattgagatttgagtg--agaag----agaa |
588157 |
T |
|
| Q |
297 |
aaaagtggtttttgataatttgtgttgtttgttgatgaaagagaaccaagaagagaaga |
355 |
Q |
| |
|
| ||| ||||||||| ||||||| || || || |||||||||||| | |||||||||| |
|
|
| T |
588158 |
gatagtagtttttgatgatttgtgatgatttttcatgaaagagaacgatgaagagaaga |
588216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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