View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_low_45 (Length: 447)

Name: NF18178_low_45
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_low_45
NF18178_low_45
[»] chr3 (3 HSPs)
chr3 (355-438)||(45179746-45179829)
chr3 (20-122)||(1605421-1605524)
chr3 (261-307)||(1605257-1605303)
[»] chr5 (4 HSPs)
chr5 (46-148)||(34980504-34980606)
chr5 (46-137)||(34980395-34980486)
chr5 (38-151)||(15549694-15549808)
chr5 (269-346)||(3289724-3289800)
[»] chr1 (2 HSPs)
chr1 (104-188)||(45123066-45123150)
chr1 (270-350)||(46815466-46815545)
[»] chr8 (2 HSPs)
chr8 (14-133)||(10150211-10150329)
chr8 (113-143)||(10150389-10150419)
[»] chr7 (5 HSPs)
chr7 (20-174)||(18780129-18780282)
chr7 (256-310)||(25078298-25078352)
chr7 (63-150)||(18777344-18777431)
chr7 (54-132)||(18777444-18777521)
chr7 (263-307)||(18779990-18780034)
[»] chr4 (1 HSPs)
chr4 (104-168)||(32720292-32720356)
[»] chr2 (3 HSPs)
chr2 (256-315)||(14437209-14437268)
chr2 (75-137)||(14437390-14437452)
chr2 (100-138)||(14437471-14437509)


Alignment Details
Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 355 - 438
Target Start/End: Original strand, 45179746 - 45179829
Alignment:
Q  355 tatgttgtgaaaatttgcatgtaatctcattctctagttttaaaattttcacgttatattcttgcgttcatgttgtgttccctt 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  45179746 tatgttgtgaaaatttgcatgtaatctcattctctagttttaaaattttcacattatattcttgtgttcatgttgtgttccctt 45179829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 1605524 - 1605421
Alignment:
Q  20 tgcttataattgaaaaggaaagaggtagtg--caagacaagcaatgttgcttcttgaagtgcaagacaagtaagatgcttctttcgcttgtttactttct 117  Q
    |||||| ||||| ||||||| |||||||||  ||||||||  || |||| |||||||||||||||||||| ||| || ||| ||| |||| |||||||||    
T  1605524 tgcttagaattgtaaaggaa-gaggtagtgtgcaagacaattaaggttgtttcttgaagtgcaagacaagcaaggtggttccttcacttggttactttct 1605426  T
Q  118 tgctt 122  Q
    |||||    
T  1605425 tgctt 1605421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 1605303 - 1605257
Alignment:
Q  261 actcttgccttagagtgttgggagatgtagttaggtatttgctttgg 307  Q
    ||||||| |||||||||||  ||||||||||||||||||| ||||||    
T  1605303 actcttgtcttagagtgttatgagatgtagttaggtattttctttgg 1605257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 34980504 - 34980606
Alignment:
Q  46 agtgcaagacaagcaatgttgcttcttgaagtgcaagacaagtaagatgcttctttcgcttgtttactttcttgcttgacaagtcttgtaggtcacaatg 145  Q
    |||||||| ||| ||| |||| |||||||||| ||||||||| ||| || ||| ||| |||||||||||||||||||| ||||||||||||| ||||| |    
T  34980504 agtgcaagtcaaacaaagttgtttcttgaagtccaagacaagcaaggtgattccttcacttgtttactttcttgcttggcaagtcttgtaggacacaagg 34980603  T
Q  146 ttg 148  Q
    |||    
T  34980604 ttg 34980606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 34980486 - 34980395
Alignment:
Q  46 agtgcaagacaagcaatgttgcttcttgaagtgcaagacaagtaagatgcttctttcgcttgtttactttcttgcttgacaagtcttgtagg 137  Q
    |||||||||||||||| |||| ||||||||||||||| |||| ||| || ||| |||  |||||||||||||| |||||||| |||||||||    
T  34980486 agtgcaagacaagcaaggttgtttcttgaagtgcaaggcaagcaaggtgattccttcagttgtttactttcttacttgacaactcttgtagg 34980395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 15549808 - 15549694
Alignment:
Q  38 aaagaggtagtgcaagacaagcaatgttgcttcttgaagtgc-aagacaagtaagatgcttctttcgcttgtttactttcttgcttgacaagtcttgtag 136  Q
    ||||| ||| ||||||| ||||||  ||| || ||||||||| |||||||||||| || ||| ||| ||||||| ||||||||| |||||||| ||||||    
T  15549808 aaagatgtaatgcaagataagcaagattgttttttgaagtgctaagacaagtaaggtggttcattcacttgtttcctttcttgcatgacaagtattgtag 15549709  T
Q  137 gtcacaatgttgttt 151  Q
    | |||||||||||||    
T  15549708 gccacaatgttgttt 15549694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 3289724 - 3289800
Alignment:
Q  269 cttagagtgttgggagatgtagttaggtatttgctttggaggatgtgagtgtagtgggagacgatgggtgtttgagag 346  Q
    |||||||||||| ||||||||||||||||||| ||||||| | |||| ||||| | || | |||||||||||||||||    
T  3289724 cttagagtgttgtgagatgtagttaggtattttctttggacggtgtgggtgtactagg-gccgatgggtgtttgagag 3289800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 45123066 - 45123150
Alignment:
Q  104 cttgtttactttcttgcttgacaagtcttgtaggtcacaatgttgtttacgaaagtgcaagacaaacatagtgatgtctatatat 188  Q
    |||||||||||| |||||||||||||||||||||| ||||| ||||||    |||||||||||||||| ||||||  ||||||||    
T  45123066 cttgtttactttattgcttgacaagtcttgtaggtgacaatattgtttcttgaagtgcaagacaaacaaagtgatacctatatat 45123150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 46815466 - 46815545
Alignment:
Q  270 ttagagtgttgggagatgtagttaggtatttgctttggaggatgtgagtgtagtgggagacgatgggtgtttgagagtagt 350  Q
    ||||||||||| || ||||| ||| |||||||||||||||| ||||| |||| | |||| | ||||||||| |||| ||||    
T  46815466 ttagagtgttgtgaaatgtacttaagtatttgctttggagggtgtgaatgta-ttggagccaatgggtgttcgagaatagt 46815545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 10150211 - 10150329
Alignment:
Q  14 tcacattgcttataattgaaaaggaaagaggtagtgcaagacaagcaatgttgcttcttgaagtgcaagacaagtaagatgcttctttcgcttgtttact 113  Q
    ||||||| |||| ||||| || ||||| ||||| |||||||||||||||||||  ||||||||||||||||||| || | | ||| |||  |||||||||    
T  10150211 tcacattacttaaaattgtaatggaaa-aggtaatgcaagacaagcaatgttgtatcttgaagtgcaagacaagcaaaacggttcattcatttgtttact 10150309  T
Q  114 ttcttgcttgacaagtcttg 133  Q
    || ||| ||| |||||||||    
T  10150310 tttttgtttggcaagtcttg 10150329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 143
Target Start/End: Original strand, 10150389 - 10150419
Alignment:
Q  113 tttcttgcttgacaagtcttgtaggtcacaa 143  Q
    |||||||||||||||||||||||||||||||    
T  10150389 tttcttgcttgacaagtcttgtaggtcacaa 10150419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 18780282 - 18780129
Alignment:
Q  20 tgcttataattgaaaaggaaagaggtagtgcaagacaagcaatgttgcttcttgaagtgcaagacaagtaagatgcttctttcgcttgtttactttcttg 119  Q
    |||||| ||||| ||||||| |||||||||||||||||| || |||  |||||||||| ||| ||||| | | || |||  || |||| ||| |||||||    
T  18780282 tgcttagaattgtaaaggaa-gaggtagtgcaagacaagtaaggttatttcttgaagttcaacacaagcatggtggttccatcacttggttagtttcttg 18780184  T
Q  120 cttgacaagtcttgtaggtcacaatgttgtttacgaaagtgcaagacaaacatag 174  Q
    |||| ||||||||| | | ||||| ||| |||   ||| ||||||||||||||||    
T  18780183 cttggcaagtcttgcatgccacaaggttttttcttaaattgcaagacaaacatag 18780129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 25078298 - 25078352
Alignment:
Q  256 cttaaactcttgccttagagtgttgggagatgtagttaggtatttgctttggagg 310  Q
    |||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||    
T  25078298 cttatactcttgtcttagagtgttgtgagatgtaattaggtatttgctttggagg 25078352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 18777431 - 18777344
Alignment:
Q  63 gttgcttcttgaagtgcaagacaagtaagatgcttctttcgcttgtttactttcttgcttgacaagtcttgtaggtcacaatgttgtt 150  Q
    |||| |||||||||| ||||||||| || ||| ||| |||  || |||||||||||| ||| |||||||| |||| ||||| ||||||    
T  18777431 gttgtttcttgaagttcaagacaagcaatatggttccttcaattctttactttcttgtttggcaagtcttatagggcacaaggttgtt 18777344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 18777521 - 18777444
Alignment:
Q  54 acaagcaatgttgcttcttgaagtgcaagacaagtaagatgcttctttcgcttgtttactttcttgcttgacaagtctt 132  Q
    ||||||||||| | |||||||||||| ||||||| | | || ||| ||| |||||||||||||||  ||||||||||||    
T  18777521 acaagcaatgtggtttcttgaagtgcgagacaag-atggtggttccttcacttgtttactttcttatttgacaagtctt 18777444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 18780034 - 18779990
Alignment:
Q  263 tcttgccttagagtgttgggagatgtagttaggtatttgctttgg 307  Q
    ||||| |||||||||||| ||||||||||||| ||||| ||||||    
T  18780034 tcttgtcttagagtgttgtgagatgtagttagatattttctttgg 18779990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 32720356 - 32720292
Alignment:
Q  104 cttgtttactttcttgcttgacaagtcttgtaggtcacaatgttgtttacgaaagtgcaagacaa 168  Q
    ||||| || |||||||||||||||||| |||||||||||| |||||||    |||||||||||||    
T  32720356 cttgtgtagtttcttgcttgacaagtcctgtaggtcacaaggttgttttatgaagtgcaagacaa 32720292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 14437268 - 14437209
Alignment:
Q  256 cttaaactcttgccttagagtgttgggagatgtagttaggtatttgctttggaggatgtg 315  Q
    |||| ||||||| |||| ||||||| ||||||||||||||||||| ||||| ||| ||||    
T  14437268 cttatactcttgtcttaaagtgttgtgagatgtagttaggtatttactttgtagggtgtg 14437209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 14437452 - 14437390
Alignment:
Q  75 agtgcaagacaagtaagatgcttctttcgcttgtttactttcttgcttgacaagtcttgtagg 137  Q
    |||||||||||||||| ||| ||  |  | ||||||||||||||||||||||||| |||||||    
T  14437452 agtgcaagacaagtaatatggtttctatgtttgtttactttcttgcttgacaagtattgtagg 14437390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 14437509 - 14437471
Alignment:
Q  100 ttcgcttgtttactttcttgcttgacaagtcttgtaggt 138  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  14437509 ttcgcttgtatactttcttgtttgacaagtcttgtaggt 14437471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University