View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_low_47 (Length: 440)

Name: NF18178_low_47
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_low_47
NF18178_low_47
[»] chr6 (12 HSPs)
chr6 (23-430)||(6471781-6472188)
chr6 (23-180)||(6529229-6529386)
chr6 (23-198)||(6466363-6466538)
chr6 (23-180)||(6506516-6506673)
chr6 (23-168)||(6519573-6519718)
chr6 (23-180)||(6460812-6460969)
chr6 (23-165)||(6497703-6497845)
chr6 (341-422)||(13034930-13035011)
chr6 (23-168)||(6515092-6515237)
chr6 (26-135)||(7204144-7204254)
chr6 (26-135)||(7238895-7239005)
chr6 (41-123)||(6458424-6458506)
[»] chr7 (3 HSPs)
chr7 (23-159)||(9664312-9664448)
chr7 (41-153)||(3752846-3752958)
chr7 (41-153)||(4047280-4047392)
[»] chr4 (1 HSPs)
chr4 (23-159)||(13535336-13535472)


Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 23 - 430
Target Start/End: Complemental strand, 6472188 - 6471781
Alignment:
Q  23 gaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga 122  Q
    |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||    
T  6472188 gaaagtgatgagtttgatgatttgatgaggtaaggatgaatgtattcaggttggtcaccattttttaggacaatgttttggaagaaagagtttgtaggga 6472089  T
Q  123 ggggtgtggatagcaaatttggtgagaagaatttggaggggtcaggaagaacagtggattgtatctgtgggaatagaaaggaactattctctttgttgtt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472088 ggggtgtggatagcaaatttggtgagaagaatttggaggggtcagggagaacagtggattgtatctgtgggaatagaaaggaactattctctttgttgtt 6471989  T
Q  223 aggcattgcagctgataggataatgatgaatgtcttaattattattgtggttttatagttttttaaggtatgtggtgagtgcaatttgtgtgttagattc 322  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6471988 aggcattgcagctgataggataatgatgaatgtcttaattatgattgtggttttatagttttttaaggtatgtggtgagtgcaatttttgtgttagattc 6471889  T
Q  323 ttagtattttcagcattggatactactcaatcttaggcaagttttagggtacacgataggctaatacttgaaaatttctcaaaacaccaatgacaattaa 422  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6471888 ttagtattttcagcattagatactactcaatcttaggcaagttttagggtacacgataggctaatacttgaaaatttctcaaaacatcaatgacaattaa 6471789  T
Q  423 cctaccct 430  Q
    ||||||||    
T  6471788 cctaccct 6471781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 6529229 - 6529386
Alignment:
Q  23 gaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga 122  Q
    |||||||||||||  |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6529229 gaaagtgatgagtctgaagatttgatgagatatggatgaatgtattcaggttggtcaccattgttgagaacaaagttttggaagaaagagtttgtaggga 6529328  T
Q  123 ggggtgtggatagcaaatttggtgagaagaatttggaggggtcaggaagaacagtgga 180  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  6529329 ggggtgtggatagcagatttggagagaagaatttggaggggtcaggaaggacagtgga 6529386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 6466363 - 6466538
Alignment:
Q  23 gaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga 122  Q
    |||||||||||||  |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6466363 gaaagtgatgagtttgaagatttgatgagatatggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtgggga 6466462  T
Q  123 ggggtgtggatagcaaatttggtgagaagaatttggaggggtcaggaagaacagtggattgtatctgtgggaatag 198  Q
    ||||||||||||||| |||||| |||||||| || | ||||||||| || || ||||| ||  |||||||||||||    
T  6466463 ggggtgtggatagcagatttggagagaagaagtttgtggggtcagggaggaccgtggaatgagtctgtgggaatag 6466538  T

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Target: chr6; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 6506516 - 6506673
Alignment:
Q  23 gaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga 122  Q
    |||||||||||||  || |||||||||||||||||||||| ||||||||||   |||||||| ||||||||||||||||||||||||||||||||||| |    
T  6506516 gaaagtgatgagtttgatgatttgatgaggtaaggatgaaagtattcaggtgcatcaccattgttgagaacaaagttttggaagaaagagtttgtaggca 6506615  T
Q  123 ggggtgtggatagcaaatttggtgagaagaatttggaggggtcaggaagaacagtgga 180  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||||    
T  6506616 ggggtgtggatagcagatttggagagaagaatttggaggggtcagggaggacagtgga 6506673  T

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Target: chr6; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 6519718 - 6519573
Alignment:
Q  23 gaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga 122  Q
    |||||||||||||  || ||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6519718 gaaagtgatgagtttgatgatttaatgaggtatggatgaatatattcaggttggtcaccgtttttgagaacaaagttttggaagaaagagtttgtaggga 6519619  T
Q  123 ggggtgtggatagcaaatttggtgagaagaatttggaggggtcagg 168  Q
    ||||| ||||||| |||||||| |||||||||||||||||||||||    
T  6519618 ggggtttggatagtaaatttggagagaagaatttggaggggtcagg 6519573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 6460969 - 6460812
Alignment:
Q  23 gaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga 122  Q
    ||||| |||||||  |||||| |||||||||||||||||| |||||| |||||||||||||| | ||||||||||||||||||||| |||||||||||||    
T  6460969 gaaagagatgagttggaagatctgatgaggtaaggatgaaagtattccggttggtcaccattgtcgagaacaaagttttggaagaaggagtttgtaggga 6460870  T
Q  123 ggggtgtggatagcaaatttggtgagaagaatttggaggggtcaggaagaacagtgga 180  Q
    | ||| ||||||||| |||||  ||||||||||||||||||||||| || ||||||||    
T  6460869 gtggtttggatagcagatttgaagagaagaatttggaggggtcagggaggacagtgga 6460812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 6497703 - 6497845
Alignment:
Q  23 gaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga 122  Q
    |||||||||||||  || ||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||    
T  6497703 gaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtgggga 6497802  T
Q  123 ggggtgtggatagcaaatttggtgagaagaatttggaggggtc 165  Q
    ||||| | ||||||| ||||   ||||||||||||||||||||    
T  6497803 ggggtttagatagcagatttttagagaagaatttggaggggtc 6497845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 341 - 422
Target Start/End: Complemental strand, 13035011 - 13034930
Alignment:
Q  341 gatactactcaatcttaggcaagttttagggtacacgataggctaatacttgaaaatttctcaaaacaccaatgacaattaa 422  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13035011 gatacaactcaatcttaggcaagttttacggtacacgataggctaatacttaaaaatttctcaaaacaccaatgacaattaa 13034930  T

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Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 6515237 - 6515092
Alignment:
Q  23 gaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga 122  Q
    |||||||||||||  |  ||| |||||||||||||||| ||||||||||||   ||||| | | |||||  |||||||||||||||||||||||| ||||    
T  6515237 gaaagtgatgagtttgttgatctgatgaggtaaggatggatgtattcaggtgtttcaccctctctgagagaaaagttttggaagaaagagtttgtgggga 6515138  T
Q  123 ggggtgtggatagcaaatttggtgagaagaatttggaggggtcagg 168  Q
    ||||||| ||||| | |||||| |||||||| |||||||| |||||    
T  6515137 ggggtgtagatagaagatttggggagaagaacttggagggatcagg 6515092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 7204254 - 7204144
Alignment:
Q  26 agtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga-gg 124  Q
    |||| ||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||  | || |||| ||    
T  7204254 agtggtgagttcgatgatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggaggg 7204155  T
Q  125 ggtgtggatag 135  Q
    |||||||||||    
T  7204154 ggtgtggatag 7204144  T

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Target: chr6; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 7239005 - 7238895
Alignment:
Q  26 agtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga-gg 124  Q
    |||| ||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||  | || |||| ||    
T  7239005 agtggtgagttcgatgatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggaggg 7238906  T
Q  125 ggtgtggatag 135  Q
    |||||||||||    
T  7238905 ggtgtggatag 7238895  T

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Target: chr6; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 6458424 - 6458506
Alignment:
Q  41 gatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggag 123  Q
    ||||||||||||||||| |||||||| ||||||  |||||||||||  |||||||| |||||||||||||||||||| |||||    
T  6458424 gatttgatgaggtaagggtgaatgtactcaggtgtgtcaccattttgtagaacaaaattttggaagaaagagtttgttgggag 6458506  T

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Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 9664448 - 9664312
Alignment:
Q  23 gaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga 122  Q
    ||||||||||||| ||| ||||||| ||| ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9664448 gaaagtgatgagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga 9664349  T
Q  123 ggggtgtggatagcaaatttggtgagaagaatttgga 159  Q
    ||||||| ||||| | |||||| |||||||| |||||    
T  9664348 ggggtgtagatagaagatttggagagaagaaattgga 9664312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 3752958 - 3752846
Alignment:
Q  41 gatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagcaaat 140  Q
    ||||||||||||||||| |||||||||||||||  ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |  |    
T  3752958 gatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggt 3752859  T
Q  141 ttggtgagaagaa 153  Q
    || ||||||||||    
T  3752858 tttgtgagaagaa 3752846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 4047280 - 4047392
Alignment:
Q  41 gatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagcaaat 140  Q
    |||||||  |||||||| |||||||||||| |||| ||||||||||  |||||||| ||||||||||| |||||||||||||| ||||||||||| || |    
T  4047280 gatttgacaaggtaagggtgaatgtattcatgttgatcaccattttgtagaacaaaattttggaagaatgagtttgtagggagaggtgtggatagtaagt 4047379  T
Q  141 ttggtgagaagaa 153  Q
    || ||||||||||    
T  4047380 tttgtgagaagaa 4047392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 13535472 - 13535336
Alignment:
Q  23 gaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga 122  Q
    ||||||||||||| ||| ||||||| ||| ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13535472 gaaagtgatgagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga 13535373  T
Q  123 ggggtgtggatagcaaatttggtgagaagaatttgga 159  Q
    ||||||| ||||| | |||||| |||||||| |||||    
T  13535372 ggggtgtagatagaagatttggagagaagaaattgga 13535336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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