View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_low_50 (Length: 432)
Name: NF18178_low_50
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_50 |
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| [»] scaffold0189 (1 HSPs) |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 4479542 - 4479307
Alignment:
| Q |
23 |
tggctgccggaaaactcaaatttctcttagttttatatgggtgttgttttagaaaataacaagttgaattgtctttgtcccaatatcattcagttttgcg |
122 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4479542 |
tggctgccggaaaactcaa-tttctctaagttttatatgggtgttgttttagaaaataacaagttgaattgtccttgtcccaatatcattcagttttgcg |
4479444 |
T |
|
| Q |
123 |
aatttcttgaaatgaggaacacaaatccatcacccaatctgccatggatcttcaaaatccatcacaccaagaacatgnnnnnnnnnnnnnnnnccttgtt |
222 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
4479443 |
aatttcttaaaatgaggaacacaaatccatcacccaatctgccatggatcttcaaaatccatcacaccaagaacatgaaaaataaaaacaaaaccttgtt |
4479344 |
T |
|
| Q |
223 |
ggtgctttaaaacacatcagtattagacttagaccgc |
259 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
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|
| T |
4479343 |
ggtgctttaaaacacatcagtattaaacttagaccgc |
4479307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 4479306 - 4479250
Alignment:
| Q |
357 |
aattccggaagcatgtccgatatgattaggcgtggaagtaagggtgaaaaaacggtg |
413 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4479306 |
aattctggaagcatttccgatatgattaggcgtggaagtaagggtgaaaaaacggtg |
4479250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 194058 - 194293
Alignment:
| Q |
23 |
tggctgccggaaaactcaaatttctcttagttttatatgggtgttgttttagaaaataacaagttgaattgtctttgtcccaatatcattcagttttgcg |
122 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
194058 |
tggctgccggaaaactcaa-tttctctatgttttatatgggtgttgttttagaaaataacaagttgaattgtccttgtcccaatatcattcagttttgcg |
194156 |
T |
|
| Q |
123 |
aatttcttgaaatgaggaacacaaatccatcacccaatctgccatggatcttcaaaatccatcacaccaagaacatgnnnnnnnnnnnnnnnnccttgtt |
222 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
194157 |
aatttcttaaaatgaggaacacaaatccatcacccaatctgccatggatcttcaaaatccatcacaccaagaacatgaaaaataaaaacaaaaccttgtt |
194256 |
T |
|
| Q |
223 |
ggtgctttaaaacacatcagtattagacttagaccgc |
259 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
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|
| T |
194257 |
ggtgctttaaaacacatcagtattaaacttagaccgc |
194293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 14924875 - 14925024
Alignment:
| Q |
25 |
gctgccggaaaactcaaatttctcttagttttatatgggtgttgttttagaaaataacaagttgaattgtctttgtcccaatatcattcagttttgcgaa |
124 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||| |||||| |||||||||| | ||| | || |
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|
| T |
14924875 |
gctgccggaaaactcaaagttcca--agttttatatgggtgttgttctagaaaataacaaattgaattggctttgtttcaatatcatttaatttcacaaa |
14924972 |
T |
|
| Q |
125 |
tttcttgaaatgaggaacacaaatccatcacccaatctgccatggatcttca |
176 |
Q |
| |
|
||| || ||| |||||||||| || || ||| |||||||||||||||||||| |
|
|
| T |
14924973 |
ttttttaaaacgaggaacacagattcaccactcaatctgccatggatcttca |
14925024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 194294 - 194350
Alignment:
| Q |
357 |
aattccggaagcatgtccgatatgattaggcgtggaagtaagggtgaaaaaacggtg |
413 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
194294 |
aattctggaagcatgtccgatatgattaggcatggaagtaagggtgaaaaaacggtg |
194350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 46133910 - 46134018
Alignment:
| Q |
25 |
gctgccggaaaactcaaatttctcttagttttatatgggtgttgttttagaaaataacaagttgaattgtctttgtcccaatatcattcagttttgcgaa |
124 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||||||||||| |||| |||| ||||||||||||||||||||||| | ||||||||| ||||| | || |
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|
| T |
46133910 |
gctgccggaaaattcaaagttcta--agttttatatgggtgctgttccagaatataacaagttgaattgtctttgttcgaatatcatttagtttcacaaa |
46134007 |
T |
|
| Q |
125 |
tttcttgaaat |
135 |
Q |
| |
|
|||||| |||| |
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|
| T |
46134008 |
tttcttaaaat |
46134018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 41194720 - 41194958
Alignment:
| Q |
23 |
tggctgccggaaaactcaaatttctcttagttttatatgggtgttgttttagaaaataacaagttgaattgtctttgtcccaatat---cattcagtttt |
119 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
41194720 |
tggctgccggaaaactcaa-tttctctaagttttatatgggtgttgttttagaaaataacaagttgaattgtccttgtcccaatattatcattcagtttt |
41194818 |
T |
|
| Q |
120 |
gcgaatttcttgaaatgaggaacacaaatccatcacccaatctgccatggatcttcaaaatccatcacaccaagaacatgnnnnnnnnnnnnnnnncctt |
219 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41194819 |
gcgaatttcttaaactgaggaacacaaatccatcacccaatctgccatggatcttcaaaatccatcacaccaagaacatgaaaaataaaaacaaaacctt |
41194918 |
T |
|
| Q |
220 |
gttggtgctttaaaacacatcagtattagacttagaccgc |
259 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41194919 |
gttggtgctttaaaacacatcagtattaaacttagaccgc |
41194958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 41194959 - 41195015
Alignment:
| Q |
357 |
aattccggaagcatgtccgatatgattaggcgtggaagtaagggtgaaaaaacggtg |
413 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41194959 |
aattctggaaacatgtccgatatgattaggcgtggaagtaagggtgaaaaaacggtg |
41195015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 45500729 - 45500878
Alignment:
| Q |
25 |
gctgccggaaaactcaaatttctcttagttttatatgggtgttgttttagaaaataacaagttgaattgtctttgtcccaatatcattcagttttgcgaa |
124 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||| |||||| ||||||||||| | ||| | || |
|
|
| T |
45500729 |
gctgccggaaaactcaaagttcca--agttttatatgggtgttgttctagaaaataacaaattgaattggctttgttccaatatcatttaatttcacaaa |
45500826 |
T |
|
| Q |
125 |
tttcttgaaatgaggaacacaaatccatcacccaatctgccatggatcttca |
176 |
Q |
| |
|
|||||| ||| |||||||||| || || ||| |||||||||||||||||||| |
|
|
| T |
45500827 |
tttcttaaaacgaggaacacagattcaccactcaatctgccatggatcttca |
45500878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 281 - 386
Target Start/End: Complemental strand, 28575460 - 28575355
Alignment:
| Q |
281 |
cccgtctcctaactcgggtcgggtcaatacccaattctataacagtttcagattcttgaaccggagaagaagaataaattccggaagcatgtccgatatg |
380 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||||| ||| | ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
28575460 |
cccgtctcctatctcgaatcgggtcaagacccaattctaaaaccggttcaggttcttgaaccggagaagaagaatcaattccggaagcatgtctgatatg |
28575361 |
T |
|
| Q |
381 |
attagg |
386 |
Q |
| |
|
|||||| |
|
|
| T |
28575360 |
attagg |
28575355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 28575550 - 28575507
Alignment:
| Q |
216 |
ccttgttggtgctttaaaacacatcagtattagacttagaccgc |
259 |
Q |
| |
|
|||||||||||| || || ||||||||||||||||||||||||| |
|
|
| T |
28575550 |
ccttgttggtgcgttgaagcacatcagtattagacttagaccgc |
28575507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 10421435 - 10421282
Alignment:
| Q |
25 |
gctgccggaaaactcaaatttctcttagttttatatgggtgttgttttagaaaataacaagttgaattgtctttgtcccaatatcattcagttttgcgaa |
124 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||| |||||| ||||||||||| | ||| | || |
|
|
| T |
10421435 |
gctgccggaaaactcaaagttcca--agttttatatgggtgttgttctagaaaataacaaattgaattggctttgttccaatatcatttaatttcacaaa |
10421338 |
T |
|
| Q |
125 |
tttcttgaaatgaggaacacaaa----tccatcacccaatctgccatggatcttca |
176 |
Q |
| |
|
|||||| ||| |||||||||||| | || ||| |||||||||||||||||||| |
|
|
| T |
10421337 |
tttcttaaaacgaggaacacaaacagattcaccactcaatctgccatggatcttca |
10421282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 12391 - 12541
Alignment:
| Q |
25 |
gctgccggaaaactcaaatttctcttagttttatatgggtgttgttttagaaaataacaagttg-aattgtctttgtcccaatatcattcagttttgcga |
123 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| ||| ||||| |||||| ||||||||||| | ||| | | |
|
|
| T |
12391 |
gctgccggaaaactcaaagttcca--agttttatatgggtgttgttctagaaaataacaaattgaaattggctttgttccaatatcatttaatttcacaa |
12488 |
T |
|
| Q |
124 |
atttcttgaaatgaggaacacaaatccatcacccaatctgccatggatcttca |
176 |
Q |
| |
|
||||||| ||| |||||||| | || || ||| |||||| ||||||||||||| |
|
|
| T |
12489 |
atttcttaaaacgaggaacaaagattcaccactcaatctaccatggatcttca |
12541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 94517 - 94576
Alignment:
| Q |
121 |
cgaatttcttgaaatgaggaacacaaatccatcacccaatctgccatggatcttcaaaat |
180 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
94517 |
cgaatttcttaaaatgaggaacacatatccatcagccaatctgcaatggatcttcaaaat |
94576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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