View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_53 (Length: 424)
Name: NF18178_low_53
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 27770237 - 27770512
Alignment:
| Q |
1 |
acctaattaacaagattttattttctttggtttcaactcaatcaaaacatgaacggtctgaatcat---attaattaataaccgagtaatgttgtagaca |
97 |
Q |
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| T |
27770237 |
acctaattaacaagattttattttgtttggtttcaactcaatcaaaacaagaacggtctgaatcatctgattaattaataaccgagaaatgttgtagaca |
27770336 |
T |
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| Q |
98 |
aggatcatcttccttaatagtaggaaagacacatatgtttctttctacatctctgatctcctgaccctcactccctctctctcaca--cactcaaaggat |
195 |
Q |
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| T |
27770337 |
aggatcatcttccttaatagtaggaaagacacatat--ttctttttacatctctgatctcc-----ctccctccctctctctcacacacactcaaaggat |
27770429 |
T |
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| Q |
196 |
agaggatctaattcctaatgtttttcatatgcaagttttgtcacatacaccatatatttattcgattttcgagttttatattg |
278 |
Q |
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| T |
27770430 |
agaggatccaattcctaatgtttttcatatgcaagttttgtcacatacaccatatatttattcgattttcgagttttatattg |
27770512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 292 - 409
Target Start/End: Original strand, 27770549 - 27770665
Alignment:
| Q |
292 |
tctggtgtcatgtctacacttaatagtgtacaatattgagataggatgtcgaatattgttatgtccaattaataaatgtgaagttcttaattcaaaaatg |
391 |
Q |
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| T |
27770549 |
tctggtgtcatgtctacacttaatagtgtacaatattgagataggatgtcgaatattg-tatgtccaattaataaatgtgaagtttttaattcaaaaatg |
27770647 |
T |
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| Q |
392 |
aattcttacagttaagat |
409 |
Q |
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| T |
27770648 |
aattcttacagttaagat |
27770665 |
T |
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