View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_55 (Length: 419)
Name: NF18178_low_55
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_55 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Original strand, 43090422 - 43090822
Alignment:
| Q |
17 |
aaatgcctcgtgaaaaactacattacatgacaaaaacacacctctggaacatggggtgaagcatggaaagcaaaatcaaacaacattaaaataatgaagt |
116 |
Q |
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| T |
43090422 |
aaatgcctcgtgaaaaactacattacatgacaaaaacacacctctggaacatggggtgaagcatggaaagcaaaatcaaacaacattaaaataatgaagt |
43090521 |
T |
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| Q |
117 |
atataatgtatagagtgtgacattgcattgtggggctttatacattacacacatgaacaacttacaaagtaacaaaccatgttatgttactattaaacaa |
216 |
Q |
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| T |
43090522 |
atataatatatagagtgtgacattgcattgtggggctttatacattacacacatgaacaacttacaaagtaacaaaccatgttatgttactattaaacaa |
43090621 |
T |
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| Q |
217 |
atagaannnnnnnatgtagtaaaaaagaatcaccttggaagaatcaaattcttgaaaggtaaagcagttcaaaagttgtaaaagaagaagtggtggaaag |
316 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43090622 |
atagaa--tttttatgtagtaaaaaagaaacaccttggaagaatcaaattcttgaaaggtaaagcagttcaaaagttgtaaaagaagaagtggtggaaag |
43090719 |
T |
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| Q |
317 |
tgaaagacccaaaattgtccatggaactcagaaaaagaagagaagtgaaacagaagaggcccacagtgaaattatatgtatgttcaatgttcattcattc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43090720 |
tgaaagacccaaaattgtccatggaactcagaaaaagaagagaagtgaaacagaagaggcccacagtgaaattatatgtatgttcaatgttcattcattc |
43090819 |
T |
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| Q |
417 |
atc |
419 |
Q |
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| T |
43090820 |
atc |
43090822 |
T |
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