View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_low_56 (Length: 417)
Name: NF18178_low_56
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_56 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 13871876 - 13871488
Alignment:
| Q |
18 |
tacatagatcaaataatagggatagtaattatttctattttatctctttctggttttatgtatatctaatacatagaggacacatttggacaaagtatat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13871876 |
tacatagatcaaataatagggatagtaattatttctattttatctctttctggttttatgtatatctaatacatagaggacacatttggaaaaagtatat |
13871777 |
T |
|
| Q |
118 |
caatggtggaggatatatgggaaatcatttcaatggtgatgaaattggtggctgcaatgactaaatgaagttactaaacacatccaatccaa-ttcaaga |
216 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| |
|
|
| T |
13871776 |
caatggtgtaggatatgtgggaaatcatttcaatggtgatgaaattggtggctgcaatgactacatgaagttactaaacacatccaatccaagtccaagt |
13871677 |
T |
|
| Q |
217 |
ccatttcttttcatatgatagacttcacaagtttaagagccaattagattaattttcgctaattgtgtacaaggcaccattggacttcatcgnnnnnnnt |
316 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13871676 |
cca-ttctttccatatgatagacttcacaagtttaagagccaattagattaattttcgctaattgtgtacaaggcaccattggacttcatccaaaaaaat |
13871578 |
T |
|
| Q |
317 |
tggcttgccacaaactcttgtcagtatagccgtaggatgtaaaacaaacaaactattaatctctatctatgggaagagtaacatttgatgat |
408 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13871577 |
tggcttgccacaaactcttgtcggtatagccgtaggatgtaaaacaaacaaactattaa--tctatctatgggaagagtaacatttgatgat |
13871488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 49 - 290
Target Start/End: Complemental strand, 13878203 - 13877965
Alignment:
| Q |
49 |
tttctattttatctctttctggttttatgtatatctaatacatagaggacacatttggacaaagtatatcaatggtggaggatatatgggaaatcatttc |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| |||||||||||||||||| |||||||||| ||| |
|
|
| T |
13878203 |
tttctattttatctctttctggttttatgtatatgtaattcatagagtacacatttggacaaagtagatcaatggtggaggatatgtgggaaatcaattc |
13878104 |
T |
|
| Q |
149 |
aatggtgatgaaattggtggctgcaatgactaaatgaagttactaaacacatccaatccaattcaagaccatttcttttcatatgatagacttcacaagt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |||| ||| |||||||||||| ||||||||||||||| |
|
|
| T |
13878103 |
aatggtgatgaaattggtggctgcaatgacttcatgaagttacagaccacatccaatccaatccaagtcca-ttcttttcatattatagacttcacaagt |
13878005 |
T |
|
| Q |
249 |
ttaagagccaattagattaattttcgctaattgtgtacaagg |
290 |
Q |
| |
|
||||||||| || ||||||||||| |||||| ||| ||||| |
|
|
| T |
13878004 |
ttaagagcc--ttcgattaattttccctaattttgttcaagg |
13877965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 57 - 301
Target Start/End: Complemental strand, 13874376 - 13874148
Alignment:
| Q |
57 |
ttatctctttctggttttatgtatatctaatacatagaggacacatttggacaaagtatatcaatggtggaggatatatgggaaatcatttcaatggtga |
156 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| || |
|
|
| T |
13874376 |
ttatctctttctggttttatgtatat-------atagagtaca--tttggacaaagtatatcaatggtggatgatatatgggaaatcaattcaatgacga |
13874286 |
T |
|
| Q |
157 |
tgaaattggtggctgcaatgactaaatgaagttactaaacacatccaatccaattcaagaccatttcttttcatatgatagacttcacaagtttaagagc |
256 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| | ||||||||||| ||| || ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13874285 |
tgaaattggtggctgcagtgactgcatgaagttactgaccacatccaatc-----aaagtccgtttcttttcatatgatagactacacaagtttaaga-- |
13874193 |
T |
|
| Q |
257 |
caattagattaattttcgctaattgtgtacaaggcaccattggac |
301 |
Q |
| |
|
| ||||||||||||||||||||| ||| |||||||| ||||||| |
|
|
| T |
13874192 |
tacttagattaattttcgctaattttgttcaaggcacaattggac |
13874148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 13880845 - 13880771
Alignment:
| Q |
99 |
acatttggacaaagtatatcaatggtggaggatatatgggaaatcatttcaatggtgatgaaattggtggctgca |
173 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| | || |||||| ||||||| | ||||||||||| |||||| |
|
|
| T |
13880845 |
acattgggacaaagtagatcaatggtggaggatttgtgaaaaatcaattcaatgtttatgaaattggtagctgca |
13880771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University