View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_low_57 (Length: 416)

Name: NF18178_low_57
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_low_57
NF18178_low_57
[»] chr1 (2 HSPs)
chr1 (1-399)||(9630636-9631043)
chr1 (155-206)||(7528130-7528181)
[»] chr3 (2 HSPs)
chr3 (275-348)||(41256784-41256857)
chr3 (1-47)||(26492261-26492307)
[»] chr7 (1 HSPs)
chr7 (4-50)||(12289067-12289113)
[»] chr8 (3 HSPs)
chr8 (1-46)||(17751633-17751678)
chr8 (1-46)||(17760620-17760665)
chr8 (1-46)||(20873027-20873072)
[»] chr2 (2 HSPs)
chr2 (1-51)||(30404906-30404956)
chr2 (1-50)||(36409683-36409732)


Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 9630636 - 9631043
Alignment:
Q  1 tgtcggcgtgtcagtgtccgtgttgtgtttg-------tatccgtgcttcatagattttaaaagaagaaaacataattgcttctatagcactctaatata 93  Q
    |||||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9630636 tgtcggcgtgtcagtgtccgtgttgtgtctggtgtctgtatccgtgcttcatagattttaaaagaagaaaacataaatgcttctatagcactctaatata 9630735  T
Q  94 gaagaccaatcaaaaattaaaatttttgattaaattgcaccaaaccaaattgcaccaaaacaactgaactaaaccataaacttggtttggtttatgaatc 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9630736 gaagaccaatcaaaaattaaaatttttgattaaattgcaccaaaccaaattgcaccaaaacaactgaactaaaccataaatttggtttggtttatgaatc 9630835  T
Q  194 atgcaaacccctaactaattgaatttaaaacttt--nnnnnnnttatttagaatttgaatttgtgacaagttagttaatatgtacttactcttttgacat 291  Q
    ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9630836 atgcaaacccctaactaattgaatttaaaactttaaaaaaaaattatttagaatttgaatttgtgacaagttagttaatatgtacttactcttttgacat 9630935  T
Q  292 aaaagcaaggcataagtgacttcaaaattgataactgctcattcatttgctttcttcgattgcgttcgaccgtgatatgcgacatacgatgttgtccatc 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9630936 aaaagcaaggcataagtgacttcaaaattgataactgctcattcatttgctttcttcgattgcgttcgaccgtgatatgcgacatacgatgttgtccatc 9631035  T
Q  392 gttgtttt 399  Q
    ||||||||    
T  9631036 gttgtttt 9631043  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 7528181 - 7528130
Alignment:
Q  155 aactgaactaaaccataaacttggtttggtttatgaatcatgcaaaccccta 206  Q
    |||||||||||||||| |  ||||||||||| |||||||||||| |||||||    
T  7528181 aactgaactaaaccatcagtttggtttggttcatgaatcatgcacaccccta 7528130  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 41256857 - 41256784
Alignment:
Q  275 acttactcttttgacataaaagcaaggcataagtgacttcaaaattgataactgctcattcatttgctttcttc 348  Q
    |||||| |||||||||||||||||||||||||||||| | ||||  || || ||||||||||||||||||||||    
T  41256857 acttacccttttgacataaaagcaaggcataagtgaccttaaaacagacaaatgctcattcatttgctttcttc 41256784  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26492261 - 26492307
Alignment:
Q  1 tgtcggcgtgtcagtgtccgtgttgtgtttgtatccgtgcttcatag 47  Q
    ||||||||||||||||||||||| ||||  |||| ||||||||||||    
T  26492261 tgtcggcgtgtcagtgtccgtgtcgtgtccgtattcgtgcttcatag 26492307  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 12289113 - 12289067
Alignment:
Q  4 cggcgtgtcagtgtccgtgttgtgtttgtatccgtgcttcatagatt 50  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||    
T  12289113 cggcgtgtcggtgtccgtgttgtgtctgtatccgtgcttcatagatt 12289067  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17751678 - 17751633
Alignment:
Q  1 tgtcggcgtgtcagtgtccgtgttgtgtttgtatccgtgcttcata 46  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||    
T  17751678 tgtcggcgtgtcagtgtccgtgttgtgtatgtatccatgcttcata 17751633  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17760665 - 17760620
Alignment:
Q  1 tgtcggcgtgtcagtgtccgtgttgtgtttgtatccgtgcttcata 46  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||    
T  17760665 tgtcggcgtgtcagtgtccgtgttgtgtatgtatccatgcttcata 17760620  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20873072 - 20873027
Alignment:
Q  1 tgtcggcgtgtcagtgtccgtgttgtgtttgtatccgtgcttcata 46  Q
    ||||||||||||||||||||||| ||||  |||| |||||||||||    
T  20873072 tgtcggcgtgtcagtgtccgtgtcgtgtccgtattcgtgcttcata 20873027  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30404906 - 30404956
Alignment:
Q  1 tgtcggcgtgtcagtgtccgtgttgtgtttgtatccgtgcttcatagattt 51  Q
    |||||||||||||||||||||||  |||  |||||||||||||||||||||    
T  30404906 tgtcggcgtgtcagtgtccgtgtcatgtccgtatccgtgcttcatagattt 30404956  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 36409683 - 36409732
Alignment:
Q  1 tgtcggcgtgtcagtgtccgtgttgtgtttgtatccgtgcttcatagatt 50  Q
    ||||||| ||| ||| ||||||| |||| |||||||||||||||||||||    
T  36409683 tgtcggcatgtgagtatccgtgtcgtgtctgtatccgtgcttcatagatt 36409732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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