View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_low_58 (Length: 410)
Name: NF18178_low_58
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_58 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 31607032 - 31607419
Alignment:
| Q |
1 |
ttttaacggaggagcgccttttcaagtgggagagattacatccttggcaatactcaatactcatatgtgcactgctacaagcatacttgtttggatttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31607032 |
ttttaacggaggagcgccttttcaagtgggagagattacatccttggctatattcaatactcatttgtgcactgctacaagcatacttgtttggatttct |
31607131 |
T |
|
| Q |
101 |
ctagatatggctgtatacaagaagggctcattgataggttctgtccaaggaatgatgactggtctcgtttgcattactccgggtgcaggtaaagctcaca |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
31607132 |
ctagatatggctgtatacaagaaaggctcattgataggttctgtccaaggaatgatgactggtctcgtttgcatcacaccgggtgcaggtaaagctcaca |
31607231 |
T |
|
| Q |
201 |
caaaacgacacattcaatagttgcgagatataattctgaaaacttctttctaagcttacatgtccacaagtaatgacattatttttacctatgtatgtga |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31607232 |
caaaacgacacattcagtagttgcgagatataattctgaaaacttctttctaagcttacatgtccacaagtaatgacattatttttacctatgtatgtga |
31607331 |
T |
|
| Q |
301 |
ccaggattggtggatccttgggcagcaatattgatgggagctttgtccggctcaattccatggtacacgatgatggtgttgcacaaaa |
388 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31607332 |
caaggattggtggatccatgggcagcaatattgatgggagctttgtccggttcaattccatggtacacgatgatggtgttgcacaaaa |
31607419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University