View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_60 (Length: 406)
Name: NF18178_low_60
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 393
Target Start/End: Original strand, 43020230 - 43020610
Alignment:
| Q |
10 |
aagaatatcttttagtttttatgggtccatcattcactgaccaaagggcacaaacgacacacactatcttttctgttttgaattttaacttcttatcaat |
109 |
Q |
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| T |
43020230 |
aagaatatcttttagtttttatgggtccatcattcactgaccatagggcacaaacgacacacactatcttttctgttttgaattttaacttcttatcaat |
43020329 |
T |
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| Q |
110 |
gtttgaaggcatctacgtgtagagggagctgatttcaaattttcctatccgaatattttcagtaatctttaattttgaatacaacatgtataaatttaca |
209 |
Q |
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| T |
43020330 |
gtttgaaggcatctacgtgtagagggagttgatttcaaattttcctatccgaatattttcagtaatctttaattttgaatacaacatgtataaatttaca |
43020429 |
T |
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| Q |
210 |
tatgcaaggttcttttaattttcttaatttgtttttcagaaaagagaagagagtggtactaactaggagacagacacatctttatttgctttattcttca |
309 |
Q |
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| T |
43020430 |
tatgcaaggttcttttaattttcttaatttgtttttcagaaaagagaagagagtggtactaactaggagacagacacatctttatttgctttattcttca |
43020529 |
T |
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| Q |
310 |
ttagattcgaacttttaatttcctgctgtattattagatattattgtatagtatttttgacggacatgtaacatgttattaatg |
393 |
Q |
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| T |
43020530 |
ttagattcgaacttttaatttcctgctgtattattag---ctattgtatagtatttttgacggacatgtaacatgttattaatg |
43020610 |
T |
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