View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_61 (Length: 404)
Name: NF18178_low_61
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_61 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 41 - 388
Target Start/End: Complemental strand, 35029855 - 35029508
Alignment:
| Q |
41 |
taataatgtttgatgtaatacacttttttaatgttgcacgaataatataaacactaacgcatgttatgtgtgacagtgcatatcagaacgtaggatttac |
140 |
Q |
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| T |
35029855 |
taataatgttggatgtaatacactttttaaatgttgcacggataatataaacactaacgcatgttttgtgtgacagtgcatatcagaacgtaggatttac |
35029756 |
T |
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| Q |
141 |
tatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgaggagggtaagatcatt |
240 |
Q |
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| T |
35029755 |
tatgggatacagttgtgaacgacagttgcatcgagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgatgagggtaagatcatt |
35029656 |
T |
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| Q |
241 |
cttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctgattcttgaatatcaattctacccaac |
340 |
Q |
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| T |
35029655 |
cttatacttgttatgttgcttggaagactcaagaaattcaacacggatgcgggtaatccatggaaacttctctgattcttgaatatcaattctacccaac |
35029556 |
T |
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| Q |
341 |
atcagctccgatttcacacaaatgtgtgatctatgatcgatttcatat |
388 |
Q |
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| T |
35029555 |
atcaactctgatttcacacaaatgtgtgatctatgatcgatttcatat |
35029508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 127 - 318
Target Start/End: Complemental strand, 34970472 - 34970281
Alignment:
| Q |
127 |
aacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgagg |
226 |
Q |
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| T |
34970472 |
aacgtaggatttactatgggatacagttgtgaacgacaattacatctagagataaattgtgaaaacaaatggattggatttgttgggaaatggagtgatg |
34970373 |
T |
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| Q |
227 |
agggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctgattc |
318 |
Q |
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| T |
34970372 |
agggtaagatcattctcatacttattatgttgtttggaaggcttaaaaaattcaacatggatggaggcaagccatggaaacttctctgattc |
34970281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 115 - 335
Target Start/End: Complemental strand, 34952629 - 34952406
Alignment:
| Q |
115 |
agtgcatatcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaa |
214 |
Q |
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| T |
34952629 |
agtgcatatgggaacgtaggattttcaacaggatacagttgtgaactacagttgcatccagagacaaattgtgaaaacaaatggattggatttgttggaa |
34952530 |
T |
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| Q |
215 |
aatggagtgaggagggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctg |
314 |
Q |
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| T |
34952529 |
aatggagtgatgagggtaagatcattctcatatttgttatgttgtttggaaggcttaaaaaattcaatatggatggaggcaaagcatggaagcttcattg |
34952430 |
T |
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| Q |
315 |
attcttg---aatatcaattctac |
335 |
Q |
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| T |
34952429 |
attcatgatcaatatcaattctac |
34952406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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