View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18178_low_62 (Length: 403)
Name: NF18178_low_62
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_62 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 13795374 - 13795113
Alignment:
| Q |
19 |
aaaacgtcatttcgtattaacccatagtggaaaatataggatattcctaaaccaatttctacaaacataacaacagggttgaaaaacagttgacacttca |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13795374 |
aaaacgtcatttcgtattaacccataatggaaaatataggatattcctaaaccaatt-ctgcaaacataacaacagggttgaaaaagagttgacacttca |
13795276 |
T |
|
| Q |
119 |
tattccctttttcttccataagagaaggcatgatgaaaacaaaatgtaaaagg-aagcaatgaactgaaacaacttaagttcttgaaacctgcattgtaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
13795275 |
tattccctttttcttccataagagaaggcatgataaaaaccaaatgtaaaaggaaagcaa-------aaacaacttaagttcttgaaaccagcattgtaa |
13795183 |
T |
|
| Q |
218 |
ttgtaagtcacaacctttactttgaaaccaaatcatataacctataaaacctgaagatggaaacatccat |
287 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
13795182 |
ccgtaagtcacaacctttactttaaaaccaaatcatatagcctataaaacccgaaaatggaaacatccat |
13795113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 17587093 - 17586861
Alignment:
| Q |
19 |
aaaacgtcatttcgtattaacccatagtggaaaatataggatattcctaaaccaatttctacaaacataacaacagggttgaaaaacag-----ttgaca |
113 |
Q |
| |
|
||||||||||||||||||||||| || |||||| ||||| ||||||||| ||||||||| ||||| ||||| |||||||||| | || ||| |
|
|
| T |
17587093 |
aaaacgtcatttcgtattaacccgtattggaaataataggctattcctaa-ccaatttctgaaaaca---caacatggttgaaaaaaaaaaaaattaaca |
17586998 |
T |
|
| Q |
114 |
cttcatattccctttttcttccataagagaaggcatgatgaaaacaaaatgtaaaaggaagcaatgaactgaaacaacttaagttcttgaaacctgcatt |
213 |
Q |
| |
|
|||||||||||||| || ||| ||||| |||||||||||| | ||||||||||||||||||||| || ||||||| ||||| || |||||||| | |
|
|
| T |
17586997 |
cttcatattcccttatttttc-ataagtaaaggcatgatgacatcaaaatgtaaaaggaagcaatcaatagaaacaatttaag-tcctgaaacctac--- |
17586903 |
T |
|
| Q |
214 |
gtaattgtaagtcacaacctttactttgaaaccaaatcatataac |
258 |
Q |
| |
|
||| |||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
17586902 |
---attataagtcacaacctttagtttgaaagcaaatcatataac |
17586861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University