View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_63 (Length: 394)
Name: NF18178_low_63
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_63 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 394
Target Start/End: Complemental strand, 37939327 - 37938949
Alignment:
| Q |
16 |
cagagaaagtagagcctgtggttactgaagtggatgaaaaccaaagtgaaccaggaattcaatcattcaaacaagaggaagaagtgaaaccaaaggaaga |
115 |
Q |
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| T |
37939327 |
cagagaaagtagagcctgtggttactgaagtggatgaaaaccaaagtgaaccaggaattcaatcattcaaacaagaggaagaagtgaaaccaaaggaaga |
37939228 |
T |
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| Q |
116 |
aactgaaaatcaagaacaaacaggtgatagagtggaggttcaccctccaaaagactcggatattgaggcggtgaaagagaccaacaactctgggtcagaa |
215 |
Q |
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| T |
37939227 |
aactgaaaatcaagaacaaacaggtgatagagtggaggttcaccctccaaaagactcggatattgaggcggtgaaagagaccaacaactctgggtcagaa |
37939128 |
T |
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| Q |
216 |
gcaattcttgtaaaagaagagaacattgatcctctgtctaatggagtggaggaaaagctaagtgaacaattacaagtaggtgaggaagttggagaaatta |
315 |
Q |
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| T |
37939127 |
gcaattcttgtaaaagaagagaacattgatcctctgtctaatggagtggaggaaaagctaagtgaacaattacaagtaggtgaggaagttggggaaatta |
37939028 |
T |
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| Q |
316 |
ttaaggaagtggagcccgagcaagcaactgacaaaactgaaggatctaatggcaccatcaaagaagaggaaactgaacc |
394 |
Q |
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| T |
37939027 |
ttaaggaagtggagcccgagcaagcaactgaaaaaactgaaggatctaatggcaccatcaaagaagaggaaactgaacc |
37938949 |
T |
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