View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_64 (Length: 394)
Name: NF18178_low_64
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 49011323 - 49011697
Alignment:
| Q |
1 |
acgaagccatatatcccacataaaatgtgacatattctagctacttcatagaatttgcattattattaatatcatcaacacgtacttactatatataatc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
49011323 |
acgaagccatatatcccacataaaatttgacatattctagctacttcatagaatttgcattattattaatatcatcaacacgtagt-actatatataatc |
49011421 |
T |
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| Q |
101 |
ttcgatatatagcaaaatataacaccataataaattcctcaacaaaa--ataacaccataataaatggtgtacaaatacaataatcatcccttgcagttc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49011422 |
ttcgatatatagcaaaatataacaccataataaattcctcaaaaaaaaaataacaccataataaatggtgtacaaatacaataatcatcccttgcagttc |
49011521 |
T |
|
| Q |
199 |
cctcactctctcaacgttcgtgccacatttaatcccaatgctcacccagattttcaaggttttagagcttacagtcagtcttctggccttgaatgatttg |
298 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49011522 |
cctcactctctcaacgttcgtgccacgtttaatcccaatgctcacccagattttcaaggttttagagcttacagtcagtcttctggccttgaatgatttg |
49011621 |
T |
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| Q |
299 |
agagataatgttccccgaaaacagaatactaggaaaggtcgtggtattggatttgagagtgatgaaagtaataatt |
374 |
Q |
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| T |
49011622 |
agagataatgttccccgaaaacagaatactaggaaaggtcttggtattggatttgagagtgatgaaagtaataatt |
49011697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 183 - 350
Target Start/End: Original strand, 49007474 - 49007637
Alignment:
| Q |
183 |
tcatcccttgcagttccctcactctctcaacgttcgtgccacatttaatcccaatgctcacccagattttcaaggttttagagcttacagtcagtcttct |
282 |
Q |
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| T |
49007474 |
tcatcccttgcagctccctcactctctcaacgtttttgccacatttaatcccaatgctcgcccagattttcaaggttttagagctta----cagtcttct |
49007569 |
T |
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| Q |
283 |
ggccttgaatgatttgagagataatgttccccgaaaacagaatactaggaaaggtcgtggtattggat |
350 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
49007570 |
ggccttgaatgatatgagagataatgttccccgaaaacagaagacaaggaaaggtcgtggtattggat |
49007637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 183 - 350
Target Start/End: Original strand, 38180277 - 38180440
Alignment:
| Q |
183 |
tcatcccttgcagttccctcactctctcaacgttcgtgccacatttaatcccaatgctcacccagattttcaaggttttagagcttacagtcagtcttct |
282 |
Q |
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| T |
38180277 |
tcatcccttgcagctccctcactctctcaacgttcgtgccacatttaatcccaatgctcacccagattttcaaggttttagagctta----cagtcttct |
38180372 |
T |
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| Q |
283 |
ggccttgaatgatttgagagataatgttccccgaaaacagaatactaggaaaggtcgtggtattggat |
350 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
38180373 |
ggccttgaatgatctgagagataatgttccccgaaaacagaagacaaggaaaggtcgtggtattggat |
38180440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 183 - 350
Target Start/End: Original strand, 11203376 - 11203539
Alignment:
| Q |
183 |
tcatcccttgcagttccctcactctctcaacgttcgtgccacatttaatcccaatgctcacccagattttcaaggttttagagcttacagtcagtcttct |
282 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
11203376 |
tcatcccttgcagctccctcactctctcaacgttcatgccacatttaatcccaatgctcacccagactttcaaggttttagagctta----cagtcttct |
11203471 |
T |
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| Q |
283 |
ggccttgaatgatttgagagataatgttccccgaaaacagaatactaggaaaggtcgtggtattggat |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
11203472 |
ggccttgaatgatttgagagataatgttccccgaaaacagaagacaaggaaaggtcgtggtattggat |
11203539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 38183978 - 38184052
Alignment:
| Q |
9 |
atatatcccacataaaatgtgacatattctagctacttcatagaatttgc---attattattaatatcatcaaca |
80 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38183978 |
atatatcccacataaaatgtgacacattctagctacttcatagaatttgcattattattattaatatcatcaaca |
38184052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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