View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_66 (Length: 385)
Name: NF18178_low_66
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 3900393 - 3900750
Alignment:
| Q |
18 |
ggattacggtgatgcaaccattttagttgattgtggaaggaagtgaagtannnnnnnnnnnnaactacaatatattgtaaaaggaattaatcccaacagg |
117 |
Q |
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| T |
3900393 |
ggattacggtgatgcaaccattttagttgattgtggaaggaagtgaagtatttttgttttttaactacaatatattgtaaaaggaattaatcccaacagg |
3900492 |
T |
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| Q |
118 |
tccaactcaacaaaataacatagagtcaaaaaaggctcagttaatttgggatggaaagaatactatatttgatatgagatattgactcgtataaatcaga |
217 |
Q |
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|||||||||||||||||||| | |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
3900493 |
tccaactcaacaaaataacaaa-agtcaagaatggctcagttaatttgggatggaaagagtactatatttgatatgagatattgactcatataaatcaga |
3900591 |
T |
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| Q |
218 |
aaaggtcaaacattctctaagtgaggaaatgaaatagcaacgtaacactttggttttgctcaacctaacatcatattctcacaattactttctaggagaa |
317 |
Q |
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| T |
3900592 |
aaaggtcaaacattctctaagtgaggaaatgaaatagcaacataacactttggttttgctcaacctagcatcatattctcacaattactttctaggagaa |
3900691 |
T |
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| Q |
318 |
atcttcgacaatagatatcacttgaaaaacgtaatcccattatcgactatgctctctgc |
376 |
Q |
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| T |
3900692 |
atcttcgacaatagatatctcttgaaaaacgtaatcccattatcgaccatgctctctgc |
3900750 |
T |
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