View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_low_7 (Length: 700)

Name: NF18178_low_7
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_low_7
NF18178_low_7
[»] chr2 (25 HSPs)
chr2 (308-540)||(1895402-1895634)
chr2 (20-230)||(1895712-1895922)
chr2 (316-540)||(17281850-17282075)
chr2 (322-540)||(1551510-1551728)
chr2 (308-538)||(17375271-17375501)
chr2 (427-540)||(3921584-3921697)
chr2 (617-688)||(1895254-1895325)
chr2 (621-682)||(1551809-1551870)
chr2 (623-680)||(17282158-17282215)
chr2 (467-540)||(34660278-34660351)
chr2 (621-680)||(3921444-3921503)
chr2 (621-678)||(17375153-17375210)
chr2 (131-184)||(4140798-4140851)
chr2 (365-417)||(3921684-3921736)
chr2 (621-680)||(4869507-4869566)
chr2 (346-412)||(4869709-4869775)
chr2 (467-540)||(4869637-4869710)
chr2 (131-179)||(1551257-1551305)
chr2 (627-679)||(14950835-14950887)
chr2 (131-184)||(17281613-17281666)
chr2 (187-230)||(1551367-1551410)
chr2 (192-230)||(17281727-17281765)
chr2 (308-353)||(4140576-4140621)
chr2 (148-181)||(34660599-34660632)
chr2 (149-181)||(4869990-4870022)
[»] chr4 (21 HSPs)
chr4 (308-540)||(53202258-53202490)
chr4 (308-543)||(47518349-47518584)
chr4 (308-540)||(23054132-23054363)
chr4 (360-518)||(6410005-6410164)
chr4 (449-540)||(34227057-34227148)
chr4 (621-680)||(53202118-53202177)
chr4 (621-680)||(47518662-47518721)
chr4 (617-685)||(23054441-23054508)
chr4 (621-682)||(34227204-34227265)
chr4 (182-230)||(53202568-53202616)
chr4 (470-535)||(12469342-12469407)
chr4 (627-679)||(45873102-45873154)
chr4 (131-183)||(53202669-53202721)
chr4 (633-676)||(12489216-12489259)
chr4 (376-422)||(24957572-24957618)
chr4 (470-518)||(12466698-12466746)
chr4 (627-679)||(14441115-14441167)
chr4 (627-677)||(12130516-12130566)
chr4 (136-185)||(47518123-47518172)
chr4 (627-679)||(38093215-38093267)
chr4 (627-679)||(55728692-55728744)
[»] chr6 (6 HSPs)
chr6 (322-540)||(20740570-20740788)
chr6 (308-540)||(21881459-21881691)
chr6 (617-682)||(20740453-20740518)
chr6 (621-680)||(21881318-21881377)
chr6 (131-182)||(20740991-20741042)
chr6 (627-679)||(32747716-32747768)
[»] chr5 (29 HSPs)
chr5 (308-540)||(7766903-7767135)
chr5 (312-543)||(18696922-18697155)
chr5 (319-540)||(27169997-27170219)
chr5 (430-517)||(41355543-41355630)
chr5 (617-680)||(38958379-38958442)
chr5 (308-412)||(7271894-7271995)
chr5 (308-417)||(41355444-41355553)
chr5 (621-676)||(41355722-41355777)
chr5 (469-540)||(38958230-38958301)
chr5 (474-540)||(7271826-7271892)
chr5 (131-185)||(18697327-18697381)
chr5 (467-540)||(6030388-6030461)
chr5 (133-185)||(7766674-7766726)
chr5 (621-680)||(7271708-7271767)
chr5 (346-412)||(6030323-6030389)
chr5 (346-412)||(26656829-26656895)
chr5 (346-412)||(26928416-26928482)
chr5 (621-675)||(27170275-27170329)
chr5 (627-679)||(26331217-26331269)
chr5 (621-680)||(26656630-26656688)
chr5 (621-680)||(26928217-26928275)
chr5 (621-676)||(40599985-40600040)
chr5 (641-679)||(42221388-42221426)
chr5 (621-676)||(7767203-7767255)
chr5 (131-172)||(41355213-41355254)
chr5 (627-679)||(24867205-24867257)
chr5 (467-517)||(26656780-26656830)
chr5 (467-517)||(26928367-26928417)
chr5 (182-230)||(18697228-18697276)
[»] chr8 (10 HSPs)
chr8 (308-543)||(10408814-10409049)
chr8 (316-540)||(5994622-5994846)
chr8 (360-540)||(6444027-6444208)
chr8 (627-679)||(5994485-5994537)
chr8 (621-680)||(10408702-10408761)
chr8 (627-679)||(15050162-15050214)
chr8 (132-185)||(10409225-10409278)
chr8 (632-676)||(3763045-3763089)
chr8 (187-219)||(10409137-10409169)
chr8 (627-679)||(25142902-25142954)
[»] chr1 (20 HSPs)
chr1 (308-513)||(34117991-34118198)
chr1 (308-418)||(39708920-39709029)
chr1 (316-417)||(34655070-34655171)
chr1 (354-517)||(11407928-11408092)
chr1 (427-543)||(34654967-34655083)
chr1 (621-680)||(34654830-34654889)
chr1 (429-539)||(26236671-26236781)
chr1 (427-517)||(39709015-39709105)
chr1 (346-412)||(615825-615891)
chr1 (467-540)||(615753-615826)
chr1 (617-680)||(39709180-39709243)
chr1 (622-682)||(34117896-34117955)
chr1 (131-172)||(34118386-34118427)
chr1 (149-185)||(39708560-39708596)
chr1 (621-674)||(615638-615691)
chr1 (131-180)||(616108-616157)
chr1 (627-676)||(11814695-11814744)
chr1 (627-675)||(2077483-2077531)
chr1 (627-679)||(14351174-14351226)
chr1 (182-222)||(39708650-39708690)
[»] chr7 (4 HSPs)
chr7 (317-540)||(3302567-3302790)
chr7 (621-680)||(11698554-11698613)
chr7 (621-680)||(3302427-3302486)
chr7 (627-679)||(31039000-31039052)
[»] chr3 (6 HSPs)
chr3 (467-540)||(18269763-18269836)
chr3 (621-680)||(43275830-43275890)
chr3 (633-685)||(18269919-18269971)
chr3 (359-412)||(18269711-18269764)
chr3 (627-676)||(31699221-31699270)
chr3 (466-512)||(43275999-43276045)
[»] scaffold0157 (1 HSPs)
scaffold0157 (633-676)||(31218-31261)
[»] scaffold0027 (1 HSPs)
scaffold0027 (627-679)||(2938-2989)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 308 - 540
Target Start/End: Complemental strand, 1895634 - 1895402
Alignment:
Q  308 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 407  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1895634 atgcttgtcggtggttgtttggtttttgtgggtctcagactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 1895535  T
Q  408 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 507  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1895534 gtgattgatcggtcatgatggtggtgatgagtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttggtttgtggtact 1895435  T
Q  508 tcatggtggttttcttggtggtactgattttgg 540  Q
    ||||||||||||||||||||||| |||||||||    
T  1895434 tcatggtggttttcttggtggtattgattttgg 1895402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 1895922 - 1895712
Alignment:
Q  20 ttggtccattcttttcaaaagcaactttgtgtcttattaatcaaggttgatataaattcataataggaaataaatttgatatatttatttatatgagtgt 119  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1895922 ttggtccattcttttcaaaagcaactttgtgtgttgttaatcaaggttgttataaattcataataggaaataaatttgatatatttatttatatgagtgt 1895823  T
Q  120 atattttttggtaaacctagaaccggcgtactcctttcttcctcacacaaatttcaaatccgccgctccactgtacctttccgacgtgcggttgctctct 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  |||||||||||||||||||||||||||    
T  1895822 atattttttggtaaacctagaaccggcgtactcctttcttcctcacacaaatttcaaatccgccacttcaccatacctttccgacgtgcggttgctctct 1895723  T
Q  220 atcgtcgtaaa 230  Q
    |||||||||||    
T  1895722 atcgtcgtaaa 1895712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 316 - 540
Target Start/End: Original strand, 17281850 - 17282075
Alignment:
Q  316 cggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattga 415  Q
    ||||||||||||| ||||||| ||| ||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||    
T  17281850 cggtggttgtttgtttttcgtaggtctcagactatttgatttgttttctctcttggtagtggtggaggttatgtttgctcgcaacataggtggtgatgga 17281949  T
Q  416 tcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttag-tttgtggtacttcatggt 514  Q
    || ||||  ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  17281950 tcagtcacaatggtggtgatggatcatatctaggtttgcttatgaacttatatggtttcgatggatctttggttgtgttggttttgtggtacttcatggt 17282049  T
Q  515 ggttttcttggtggtactgattttgg 540  Q
    ||||||||||||||| ||||||||||    
T  17282050 ggttttcttggtggtgctgattttgg 17282075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 322 - 540
Target Start/End: Original strand, 1551510 - 1551728
Alignment:
Q  322 ttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtc 421  Q
    ||||||| ||||||||||| ||| |||||||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||| |||    
T  1551510 ttgtttgattttcgtgggtctcagactatttgatttgttttctctattggttgtggtggatgttatgtttgctcgcaacataggtggtgatggatcagtc 1551609  T
Q  422 atgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttc 521  Q
    | |||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  1551610 acgatggtggtgatggatcatgtataggttcgcttatgaacttatatagtttcgatggatctttggttgtgttggtttgtggtacttcgtggtggttttc 1551709  T
Q  522 ttggtggtactgattttgg 540  Q
    ||||| || ||||||||||    
T  1551710 ttggtagtgctgattttgg 1551728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 308 - 538
Target Start/End: Complemental strand, 17375501 - 17375271
Alignment:
Q  308 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 407  Q
    |||| |||||||||||||||||||||||||| | ||| |||||||||||  |||||||| |||||||||||||||||||||| ||||| |||||||||||    
T  17375501 atgcctgtcggtggttgtttggttttcgtggctctcacactatttgattcgttttctctattggttgtggtggaggttatgtttgctcacaacataggtg 17375402  T
Q  408 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 507  Q
    ||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||||| ||    
T  17375401 gtgatggatcgatcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatggtttcgatgaatctttggttgtgttggtttgtggtgct 17375302  T
Q  508 tcatggtggttttcttggtggtactgatttt 538  Q
    |||||   |||||| ||||||| ||||||||    
T  17375301 tcatgacagttttcatggtggtgctgatttt 17375271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 427 - 540
Target Start/End: Complemental strand, 3921697 - 3921584
Alignment:
Q  427 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 526  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||||    
T  3921697 ggtggtgatggatcatatctaagttcgcttatgaacttatatggttttgatggatgtttggttgtgttggtttgtggtacttcacggtggttttcttggt 3921598  T
Q  527 ggtactgattttgg 540  Q
    ||| ||||||||||    
T  3921597 ggtgctgattttgg 3921584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 617 - 688
Target Start/End: Complemental strand, 1895325 - 1895254
Alignment:
Q  617 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatgatg 688  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  1895325 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtgttcaatggtagttttggtgatggtgatg 1895254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 1551809 - 1551870
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 682  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1551809 tgttgcttttaggtgagggttaatggtgatttttgaggtggtcaatggtagttttggtgatg 1551870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 623 - 680
Target Start/End: Original strand, 17282158 - 17282215
Alignment:
Q  623 ttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17282158 ttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtaggtttggtga 17282215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 467 - 540
Target Start/End: Complemental strand, 34660351 - 34660278
Alignment:
Q  467 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 540  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  34660351 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgg 34660278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 621 - 680
Target Start/End: Complemental strand, 3921503 - 3921444
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 680  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  3921503 tgttgcttttaggtgagggttaatggtgatttttgtggtggtaaatagtagttttggtga 3921444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 621 - 678
Target Start/End: Complemental strand, 17375210 - 17375153
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggt 678  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  17375210 tgttgctttttggtgagggttaattgtggtttttgtggtggtcaatggtagttttggt 17375153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 4140851 - 4140798
Alignment:
Q  131 taaacctagaaccggcgtactcctttcttcctcacacaaatttcaaatccgccg 184  Q
    |||||||||||||| |||||| |||||||||||||||||||| |||||||||||    
T  4140851 taaacctagaaccgccgtacttctttcttcctcacacaaattccaaatccgccg 4140798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 365 - 417
Target Start/End: Complemental strand, 3921736 - 3921684
Alignment:
Q  365 ctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatc 417  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||| ||||    
T  3921736 ctcttggttgtggtggatgttatgtttgctcgcaacataggtggtgatggatc 3921684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 621 - 680
Target Start/End: Complemental strand, 4869566 - 4869507
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 680  Q
    ||||||||||  |||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  4869566 tgttgctttttagtgatggttaatggtggtttttgtggtggtcaatggtagtttttgtga 4869507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 4869775 - 4869709
Alignment:
Q  346 actatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 412  Q
    |||||||||||  |||||||||||||||| ||||||||||| || || | |||||||||||||||||    
T  4869775 actatttgattcgttttctctcttggttgcggtggaggttacgtttgatagcaacataggtggtgat 4869709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 467 - 540
Target Start/End: Complemental strand, 4869710 - 4869637
Alignment:
Q  467 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 540  Q
    ||||||| ||||||||||||||||| || ||||| ||| |||||||| ||||||| || |||| ||||||||||    
T  4869710 atggttttgatggatctttggttgttttggtttgcggtgcttcatggcggttttcatgatggtgctgattttgg 4869637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 1551257 - 1551305
Alignment:
Q  131 taaacctagaaccggcgtactcctttcttcctcacacaaatttcaaatc 179  Q
    ||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  1551257 taaacctagaaccgttgtactcctttcttcctcacacaaattccaaatc 1551305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 679
Target Start/End: Original strand, 14950835 - 14950887
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 679  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  14950835 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 14950887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 17281613 - 17281666
Alignment:
Q  131 taaacctagaaccggcgtactcctttcttcctcacacaaatttcaaatccgccg 184  Q
    |||||||||||||| |||||||||||||||||| || ||||| |||||| ||||    
T  17281613 taaacctagaaccgccgtactcctttcttcctcgcataaattccaaatctgccg 17281666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 1551367 - 1551410
Alignment:
Q  187 ccactgtacctttccgacgtgcggttgctctctatcgtcgtaaa 230  Q
    |||| |||||||||||||||||||||||||||  ||||||||||    
T  1551367 ccaccgtacctttccgacgtgcggttgctctccgtcgtcgtaaa 1551410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 17281727 - 17281765
Alignment:
Q  192 gtacctttccgacgtgcggttgctctctatcgtcgtaaa 230  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  17281727 gtacctttccgacgtgcggttgctctatgtcgtcgtaaa 17281765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 4140621 - 4140576
Alignment:
Q  308 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttg 353  Q
    ||||||| |||||||| |||||||||||||||| ||| ||||||||    
T  4140621 atgcttgccggtggttctttggttttcgtgggtctcagactatttg 4140576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 34660632 - 34660599
Alignment:
Q  148 tactcctttcttcctcacacaaatttcaaatccg 181  Q
    ||||||||||||||||||||||||| ||||||||    
T  34660632 tactcctttcttcctcacacaaattccaaatccg 34660599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 4870022 - 4869990
Alignment:
Q  149 actcctttcttcctcacacaaatttcaaatccg 181  Q
    ||||||||||||||||||||||||| |||||||    
T  4870022 actcctttcttcctcacacaaattttaaatccg 4869990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 173; Significance: 1e-92; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 308 - 540
Target Start/End: Complemental strand, 53202490 - 53202258
Alignment:
Q  308 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 407  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53202490 atgcttgtctgtggttgtttggttttcgtgggtctcaaactatttgatttgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtg 53202391  T
Q  408 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 507  Q
    ||||  ||||||||| |||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  53202390 gtgacagatcggtcacgatggtggtgatgaatcatatctagattcgcttatgaacttatatggtttcgatggatctttggttgtattggtttgtggtact 53202291  T
Q  508 tcatggtggttttcttggtggtactgattttgg 540  Q
    ||||| ||||||||||||||||  |||||||||    
T  53202290 tcatgatggttttcttggtggtgttgattttgg 53202258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 308 - 543
Target Start/End: Original strand, 47518349 - 47518584
Alignment:
Q  308 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 407  Q
    ||||||||||||||||||||||||||| ||||| ||| |||||||||||| ||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  47518349 atgcttgtcggtggttgtttggttttcatgggtctcagactatttgatttgttttctctctatgttgtggtggaggttatgtttgctcgcaacataggtg 47518448  T
Q  408 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 507  Q
    ||||| |||| ||||  ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47518449 gtgatggatcagtcacaatggtggtgatgaatcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttcgtttgtggtact 47518548  T
Q  508 tcatggtggttttcttggtggtactgattttggatc 543  Q
    |||||||||||||||||||| | |||||||||||||    
T  47518549 tcatggtggttttcttggtgttgctgattttggatc 47518584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 308 - 540
Target Start/End: Original strand, 23054132 - 23054363
Alignment:
Q  308 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 407  Q
    ||||||||| ||||||||||||||||||||||| | | |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23054132 atgcttgtcagtggttgtttggttttcgtgggtctgagactatttgatttgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtg 23054231  T
Q  408 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 507  Q
    ||||| |||| |||| |||||| ||| ||| |||||||| ||||||||||||||||  ||||||||| ||||||||||||||||||| ||| ||||| ||    
T  23054232 gtgatggatcagtcacgatggt-gtgctggatcatatctcggttcgcttatgaactgttatggtttcaatggatctttggttgtgttggttcgtggtgct 23054330  T
Q  508 tcatggtggttttcttggtggtactgattttgg 540  Q
    | |||| ||||||| ||||||| ||||||||||    
T  23054331 ttatggcggttttcatggtggtgctgattttgg 23054363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 360 - 518
Target Start/End: Complemental strand, 6410164 - 6410005
Alignment:
Q  360 tttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttat 458  Q
    ||||||||||||| |||| |||||||||||| ||||||||| |||||||||||| ||||||||| || ||||| ||| | ||| ||||  ||||||||||    
T  6410164 tttctctcttggtggtggatggaggttatgtttgctcgcaaaataggtggtgatggatcggtcacgaaggtggcgatcgatcagatctgagttcgcttat 6410065  T
Q  459 gaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggtt 518  Q
    || ||  ||||||||||||| ||||| ||||||||| ||||||||| |||||||||||||    
T  6410064 gatctattatggtttcgatgaatcttgggttgtgttggtttgtggtgcttcatggtggtt 6410005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 449 - 540
Target Start/End: Original strand, 34227057 - 34227148
Alignment:
Q  449 gttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 540  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||||| ||||||||||    
T  34227057 gttcgcttatgaacttatatggtttcaatggatctttggttgtgttggtctgtggtacttcatggtggctttcttggtggtgctgattttgg 34227148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 621 - 680
Target Start/End: Complemental strand, 53202177 - 53202118
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53202177 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 53202118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 621 - 680
Target Start/End: Original strand, 47518662 - 47518721
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 680  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47518662 tgttgcttttaggtgagggttaatagtgatttttgtggtggtcaatggtagttttggtga 47518721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 617 - 685
Target Start/End: Original strand, 23054441 - 23054508
Alignment:
Q  617 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatg 685  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||    
T  23054441 ctgatgttgcttttaggtgagggttaatggtg-gttttgtggtggtcaatggtagttttggtgacgatg 23054508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 34227204 - 34227265
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 682  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  34227204 tgttgcttttaggtgagggttaatggtggttttcgtgatggtcaatggtagttttagtgatg 34227265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 53202616 - 53202568
Alignment:
Q  182 ccgctccactgtacctttccgacgtgcggttgctctctatcgtcgtaaa 230  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||    
T  53202616 ccgcaccaccgtacctttccgacgtgcggttgctctctatcgtcgtaaa 53202568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 470 - 535
Target Start/End: Original strand, 12469342 - 12469407
Alignment:
Q  470 gtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgat 535  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||||  | ||||||| |||||    
T  12469342 gtttcgatggatccttggttgtgttggtttgtggtccttcatggtggttaccatggtggtgctgat 12469407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 679
Target Start/End: Complemental strand, 45873154 - 45873102
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 679  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  45873154 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 45873102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 53202721 - 53202669
Alignment:
Q  131 taaacctagaaccggcgtactcctttcttcctcacacaaatttcaaatccgcc 183  Q
    ||||| || ||||| |||||||||||||||||||||||||||| |||||||||    
T  53202721 taaacgtaaaaccgccgtactcctttcttcctcacacaaattttaaatccgcc 53202669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 633 - 676
Target Start/End: Original strand, 12489216 - 12489259
Alignment:
Q  633 gtgagggttaatggtgatttttgtggtggtcaatggtagttttg 676  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  12489216 gtgatggttaatggtgatttttgtggtggttaatggtagttttg 12489259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 376 - 422
Target Start/End: Original strand, 24957572 - 24957618
Alignment:
Q  376 ggtggaggttatgtctgctcgcaacataggtggtgattgatcggtca 422  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||    
T  24957572 ggtggaggttatgtttgctcgcaacataggtggtgatgtatcggtca 24957618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 518
Target Start/End: Original strand, 12466698 - 12466746
Alignment:
Q  470 gtttcgatggatctttggttgtgttagtttgtggtacttcatggtggtt 518  Q
    ||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  12466698 gtttcgatggatccttggttatgttggtttgtggtccttcatggtggtt 12466746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 679
Target Start/End: Complemental strand, 14441167 - 14441115
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 679  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  14441167 tttttggtgaggattaatggtggtttttgtgctggttaatggtagttttggtg 14441115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 627 - 677
Target Start/End: Complemental strand, 12130566 - 12130516
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttgg 677  Q
    |||| ||||||| |||||| |  ||||||||||||||||||||||||||||    
T  12130566 tttttggtgaggattaatgatagtttttgtggtggtcaatggtagttttgg 12130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 47518123 - 47518172
Alignment:
Q  136 ctagaaccggcgtactcctttcttcctcacacaaatttcaaatccgccgc 185  Q
    ||||||||| ||||| |||||||| |||||||||||| |||||| |||||    
T  47518123 ctagaaccgccgtacccctttctttctcacacaaattccaaatctgccgc 47518172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 679
Target Start/End: Complemental strand, 38093267 - 38093215
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 679  Q
    |||| ||||||| || |||||| ||||||||||||| | ||||||||||||||    
T  38093267 tttttggtgaggatttatggtgttttttgtggtggttattggtagttttggtg 38093215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 679
Target Start/End: Complemental strand, 55728744 - 55728692
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 679  Q
    |||| ||||||| ||||||||| ||||||||||||| |||| || ||||||||    
T  55728744 tttttggtgaggattaatggtggtttttgtggtggttaatgataattttggtg 55728692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 171; Significance: 2e-91; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 322 - 540
Target Start/End: Complemental strand, 20740788 - 20740570
Alignment:
Q  322 ttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtc 421  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||| ||||    
T  20740788 ttgtttggttttcgtgggtctcaaactatttgatttgttttctctcttggttgtggtggatgttatgtttgctcgcaacataggtggtgatggattggtc 20740689  T
Q  422 atgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttc 521  Q
    | |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  20740688 acgatggtggtgatggatcatatctaggttcggttatgaacttatatggtttcgatggatctttggttgtgttggtttatggtacttcatggtggttttc 20740589  T
Q  522 ttggtggtactgattttgg 540  Q
    |||||||| ||||||||||    
T  20740588 ttggtggtgctgattttgg 20740570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 308 - 540
Target Start/End: Complemental strand, 21881691 - 21881459
Alignment:
Q  308 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 407  Q
    |||||||||||| |||||||||||||||||| | ||| |||||||||||  ||||||||||||| ||||| ||||||||||| ||||||||||| |||||    
T  21881691 atgcttgtcggtcgttgtttggttttcgtggctctcagactatttgattcgttttctctcttggctgtggcggaggttatgtttgctcgcaacaaaggtg 21881592  T
Q  408 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 507  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||| |||| ||||||||| ||    
T  21881591 gtgatggatcggtcacgatggtggtgatggatcatatctaggttcgcttatgaactgctatggtttcgatgaatctttggttatgttggtttgtggtgct 21881492  T
Q  508 tcatggtggttttcttggtggtactgattttgg 540  Q
    ||||||  ||| || ||||||| ||||||||||    
T  21881491 tcatggcagttatcatggtggtgctgattttgg 21881459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 617 - 682
Target Start/End: Complemental strand, 20740518 - 20740453
Alignment:
Q  617 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 682  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20740518 ctgatgttgcttttaggtgaaggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 20740453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 621 - 680
Target Start/End: Complemental strand, 21881377 - 21881318
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 680  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  21881377 tgttgctttttggtgagggttaatcgtgatttttgtggtggtcaatgctagttttggtga 21881318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 20741042 - 20740991
Alignment:
Q  131 taaacctagaaccggcgtactcctttcttcctcacacaaatttcaaatccgc 182  Q
    ||||||||||||||  ||||||||||||||||||||||||||| ||||||||    
T  20741042 taaacctagaaccgctgtactcctttcttcctcacacaaattttaaatccgc 20740991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 679
Target Start/End: Original strand, 32747716 - 32747768
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 679  Q
    |||| |||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  32747716 tttttggtgaggtgtaatggtggtttttgtggtggttaatggtagttttggtg 32747768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 2e-78; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 308 - 540
Target Start/End: Original strand, 7766903 - 7767135
Alignment:
Q  308 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 407  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||    
T  7766903 atgcttgccggtggttgtttggttttcgtgggtctcagactatttgatttgttttctctcttggttgtgatggaggttatgtttgctcgcaacataggtg 7767002  T
Q  408 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 507  Q
    |||||||||||| ||  ||||||||||||| |||||||||||||| |||||||| |  ||||||||||||||||||||||||||||| ||||||||| ||    
T  7767003 gtgattgatcggccacaatggtggtgatggatcatatctaggttcacttatgaattgttatggtttcgatggatctttggttgtgttggtttgtggtgct 7767102  T
Q  508 tcatggtggttttcttggtggtactgattttgg 540  Q
    |||||| || |||| |||||||  |||||||||    
T  7767103 tcatggcgggtttcatggtggtgttgattttgg 7767135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 312 - 543
Target Start/End: Complemental strand, 18697155 - 18696922
Alignment:
Q  312 ttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtg--gtggaggttatgtctgctcgcaacataggtggt 409  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||| |||| | | |||||||||  ||||||||||||| ||| |||||||||||||||    
T  18697155 ttgtcggtggttgtttggttttcgtgggtctcagactatttgatttgttttttatattggttgtgtggtggaggttatgtttgcccgcaacataggtggt 18697056  T
Q  410 gattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttc 509  Q
    ||| |||| |||| |||||||||||||| |||||||||||||||||||||||||  ||||| |||| |||||||||||||||||| ||||||||| ||||    
T  18697055 gatggatcagtcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatgggttcggtggatctttggttgtgttggtttgtggtgcttc 18696956  T
Q  510 atggtggttttcttggtggtactgattttggatc 543  Q
    |||| | ||||| ||||| | |||||||||||||    
T  18696955 atggcgtttttcatggtgttgctgattttggatc 18696922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 319 - 540
Target Start/End: Original strand, 27169997 - 27170219
Alignment:
Q  319 tggttgtttggttttcgtgggtatcaaactatttgatttctttt-ctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatc 417  Q
    |||||||||||||||||||||| |||  ||||||||||  |||| ||||||||||||||||||||||||||| |||||||||| || |||||||| ||||    
T  27169997 tggttgtttggttttcgtgggtctcaggctatttgattcgtttttctctcttggttgtggtggaggttatgtttgctcgcaacgtaagtggtgatggatc 27170096  T
Q  418 ggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 517  Q
    ||||| ||||||||| |||| |||||| | | ||  |||| |||||  ||||||||||||||||||||||||||||| ||||||||| |||||||| |||    
T  27170097 ggtcacgatggtggtaatggatcatatttggctttacttacgaactgttatggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcggt 27170196  T
Q  518 tttcttggtggtactgattttgg 540  Q
    |||| ||||||| || |||||||    
T  27170197 tttcatggtggtgctaattttgg 27170219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 430 - 517
Target Start/End: Original strand, 41355543 - 41355630
Alignment:
Q  430 ggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 517  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41355543 ggtgatggatcatatctatgttcgctcatgaacttatatggtttcgatggatctttggttgtgttggtttgtggtacttcatggtggt 41355630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 617 - 680
Target Start/End: Original strand, 38958379 - 38958442
Alignment:
Q  617 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 680  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38958379 ctgacgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 38958442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 308 - 412
Target Start/End: Complemental strand, 7271995 - 7271894
Alignment:
Q  308 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 407  Q
    ||||||||| ||||||||||||||||  ||||  |   |||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7271995 atgcttgtcagtggttgtttggttttattggggct---actatttgattcgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtg 7271899  T
Q  408 gtgat 412  Q
    |||||    
T  7271898 gtgat 7271894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 308 - 417
Target Start/End: Original strand, 41355444 - 41355553
Alignment:
Q  308 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 407  Q
    ||||||| |||||||||||| |||| ||||| | | |  ||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| |    
T  41355444 atgcttgccggtggttgtttagtttccgtggatcttaggctatttgatttgttttctctcttggttgtggtggaggttatatttgctcgcaacataggcg 41355543  T
Q  408 gtgattgatc 417  Q
    ||||| ||||    
T  41355544 gtgatggatc 41355553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 621 - 676
Target Start/End: Original strand, 41355722 - 41355777
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 676  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41355722 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 41355777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 469 - 540
Target Start/End: Original strand, 38958230 - 38958301
Alignment:
Q  469 ggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 540  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||| ||||||||||    
T  38958230 ggtttcgatggatctttggttgtgttggtttgtgatacttcatggtggtttttttgatggtgctgattttgg 38958301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 474 - 540
Target Start/End: Complemental strand, 7271892 - 7271826
Alignment:
Q  474 cgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 540  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  7271892 cgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgg 7271826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 18697381 - 18697327
Alignment:
Q  131 taaacctagaaccggcgtactcctttcttcctcacacaaatttcaaatccgccgc 185  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  18697381 taaacctaggaccgtcgtactcctttcttcctcacacaaatttcaaatccgccgc 18697327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 467 - 540
Target Start/End: Original strand, 6030388 - 6030461
Alignment:
Q  467 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 540  Q
    |||||||||||||||||||||||||||| ||||||||| |||| ||  ||||||| ||||||| ||||||||||    
T  6030388 atggtttcgatggatctttggttgtgttggtttgtggtgcttcctgacggttttcatggtggtgctgattttgg 6030461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 7766674 - 7766726
Alignment:
Q  133 aacctagaaccggcgtactcctttcttcctcacacaaatttcaaatccgccgc 185  Q
    ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||    
T  7766674 aacctaggaccgccgtactcctttcttcctcacacaaattccaaatccgccgc 7766726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 621 - 680
Target Start/End: Complemental strand, 7271767 - 7271708
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 680  Q
    ||||||||||  |||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  7271767 tgttgctttttagtgatggttaatggtggtttttgtggtggtcaatggtacttttggtga 7271708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 346 - 412
Target Start/End: Original strand, 6030323 - 6030389
Alignment:
Q  346 actatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 412  Q
    |||||||||||  |||||||||||||||| |||||| ||||||| || ||| |||||||||||||||    
T  6030323 actatttgattcgttttctctcttggttgcggtggatgttatgtttgatcggaacataggtggtgat 6030389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 26656895 - 26656829
Alignment:
Q  346 actatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 412  Q
    |||||||||||  ||||||||||||||||| ||| ||||||||| ||||||||| ||| ||||||||    
T  26656895 actatttgattcgttttctctcttggttgttgtgaaggttatgtttgctcgcaatataagtggtgat 26656829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 26928482 - 26928416
Alignment:
Q  346 actatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 412  Q
    |||||||||||  ||||||||||||||||| ||| ||||||||| ||||||||| ||| ||||||||    
T  26928482 actatttgattcgttttctctcttggttgttgtgaaggttatgtttgctcgcaatataagtggtgat 26928416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 675
Target Start/End: Original strand, 27170275 - 27170329
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagtttt 675  Q
    |||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||    
T  27170275 tgttgctttttggtgaggattaatggtggtttttgtggtggttaatggtagtttt 27170329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 679
Target Start/End: Original strand, 26331217 - 26331269
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 679  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  26331217 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 26331269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 621 - 680
Target Start/End: Complemental strand, 26656688 - 26656630
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 680  Q
    ||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  26656688 tgttgctttttagtgatggttaatggtggtttt-gtggtggtcaatggtagttttggtga 26656630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 621 - 680
Target Start/End: Complemental strand, 26928275 - 26928217
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 680  Q
    ||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  26928275 tgttgctttttagtgatggttaatggtggtttt-gtggtggtcaatggtagttttggtga 26928217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 621 - 676
Target Start/End: Original strand, 40599985 - 40600040
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 676  Q
    ||||| |||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  40599985 tgttgatttttggtgaggattaatggtggtttttgtggtggttaatggtagttttg 40600040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 641 - 679
Target Start/End: Complemental strand, 42221426 - 42221388
Alignment:
Q  641 taatggtgatttttgtggtggtcaatggtagttttggtg 679  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  42221426 taatggtgatttttgtggtggttaatggtagttttggtg 42221388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 621 - 676
Target Start/End: Original strand, 7767203 - 7767255
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 676  Q
    |||||||||||||||||||||   |||| |||||||||||||||||| ||||||||    
T  7767203 tgttgcttttaggtgagggtt---ggtggtttttgtggtggtcaatgatagttttg 7767255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 41355213 - 41355254
Alignment:
Q  131 taaacctagaaccggcgtactcctttcttcctcacacaaatt 172  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  41355213 taaacctagaaccgcggtactcctttcttcctcacacaaatt 41355254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 679
Target Start/End: Original strand, 24867205 - 24867257
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 679  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  24867205 tttttggtgaggattaatggtggtttttgtgttggttaatggtagttttggtg 24867257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 517
Target Start/End: Complemental strand, 26656830 - 26656780
Alignment:
Q  467 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 517  Q
    |||||||||| |||||||||||||| || |||| |||| ||||||||||||    
T  26656830 atggtttcgacggatctttggttgtattggtttatggtgcttcatggtggt 26656780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 517
Target Start/End: Complemental strand, 26928417 - 26928367
Alignment:
Q  467 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 517  Q
    |||||||||| |||||||||||||| || |||| |||| ||||||||||||    
T  26928417 atggtttcgacggatctttggttgtattggtttatggtgcttcatggtggt 26928367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 18697276 - 18697228
Alignment:
Q  182 ccgctccactgtacctttccgacgtgcggttgctctctatcgtcgtaaa 230  Q
    |||| |||| |||| ||||||||||||||||||||| | ||||||||||    
T  18697276 ccgcaccaccgtacatttccgacgtgcggttgctctttgtcgtcgtaaa 18697228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 2e-75; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 308 - 543
Target Start/End: Complemental strand, 10409049 - 10408814
Alignment:
Q  308 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 407  Q
    |||||||| ||||||| ||||||||| |||||| |||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||    
T  10409049 atgcttgttggtggttatttggtttttgtgggtctcaaactatttgattttttctctctcttggttgtggtggaggttatgtttgctcgcaacataggtg 10408950  T
Q  408 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 507  Q
    ||||| || |||||| |||||||||||||| ||||||||||||||||||||||  |  ||||||||||||| ||||||||||||||| ||||||||| ||    
T  10408949 gtgatggaacggtcacgatggtggtgatggatcatatctaggttcgcttatgatatgttatggtttcgatgaatctttggttgtgttggtttgtggtgct 10408850  T
Q  508 tcatggtggttttcttggtggtactgattttggatc 543  Q
    |||||| ||||||  ||||||| || ||||||||||    
T  10408849 tcatggaggttttaatggtggtgctaattttggatc 10408814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 316 - 540
Target Start/End: Complemental strand, 5994846 - 5994622
Alignment:
Q  316 cggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattg 414  Q
    ||||| ||||||||||||||||||  ||||||| |||||||| ||||||||||||||||||| |||| ||||||| |||||||||||||| || | || |    
T  5994846 cggtgattgtttggttttcgtgggcctcaaactgtttgatttgttttctctcttggttgtggatggatgttatgtttgctcgcaacatag-tgctaatgg 5994748  T
Q  415 atcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggt 514  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||     
T  5994747 atcgatcatgatggtggtgatggatcatatctgggttcgcttatgaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatggc 5994648  T
Q  515 ggttttcttggtggtactgattttgg 540  Q
    ||| ||| ||||| |  |||||||||    
T  5994647 ggtattcatggtgatgttgattttgg 5994622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 360 - 540
Target Start/End: Complemental strand, 6444208 - 6444027
Alignment:
Q  360 tttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttat 458  Q
    |||||||||||||||||| |||||||||||| |||||||||| |||||||| || ||| |||||  | ||||||||||| ||| || |  |||||| |||    
T  6444208 tttctctcttggttgtggatggaggttatgtttgctcgcaacttaggtggttatggattggtcacaaaggtggtgatggatcagatatgagttcgcctat 6444109  T
Q  459 gaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 540  Q
    || ||  ||||||||||| | ||||||| ||||||| |||||||||||||| ||||||||||| ||||||  ||||||||||    
T  6444108 gagctgttatggtttcgaagaatctttgattgtgttggtttgtggtacttcgtggtggttttcatggtggggctgattttgg 6444027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 627 - 679
Target Start/End: Complemental strand, 5994537 - 5994485
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 679  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5994537 tttttggtgagggttaatggtgatttttgtggtggttaatggtagttttggtg 5994485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 621 - 680
Target Start/End: Complemental strand, 10408761 - 10408702
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 680  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||    
T  10408761 tgttgcttttaggtgagagttaatggtggtttttgtggtggtcaatggttgttttagtga 10408702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 679
Target Start/End: Original strand, 15050162 - 15050214
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 679  Q
    |||| ||||||| |||||| || ||||||||||||| ||||||||||||||||    
T  15050162 tttttggtgaggattaatgatggtttttgtggtggttaatggtagttttggtg 15050214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 10409278 - 10409225
Alignment:
Q  132 aaacctagaaccggcgtactcctttcttcctcacacaaatttcaaatccgccgc 185  Q
    ||||||||||||| || |||||||| ||||||| |||||||  |||||||||||    
T  10409278 aaacctagaaccgccgcactccttttttcctcaaacaaattctaaatccgccgc 10409225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 632 - 676
Target Start/End: Original strand, 3763045 - 3763089
Alignment:
Q  632 ggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 676  Q
    ||||||| |||||| || ||||||||||||| |||||||||||||    
T  3763045 ggtgaggattaatgatggtttttgtggtggttaatggtagttttg 3763089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 10409169 - 10409137
Alignment:
Q  187 ccactgtacctttccgacgtgcggttgctctct 219  Q
    |||||||| ||||||||||||||||||||||||    
T  10409169 ccactgtatctttccgacgtgcggttgctctct 10409137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 679
Target Start/End: Complemental strand, 25142954 - 25142902
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 679  Q
    |||| |||||||  || ||||||||||||||||||| |||||||||| |||||    
T  25142954 ttttcggtgaggagtagtggtgatttttgtggtggttaatggtagttgtggtg 25142902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 7e-57; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 308 - 513
Target Start/End: Complemental strand, 34118198 - 34117991
Alignment:
Q  308 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtg--gtggaggttatgtctgctcgcaacatagg 405  Q
    ||||||| |||||||||||| |||||||||| | ||| | |||||||||| |||||||| |||||||||  || |||||||||| |||||||||||||||    
T  34118198 atgcttgccggtggttgtttagttttcgtggatctcagattatttgatttgttttctctattggttgtgtggtagaggttatgtttgctcgcaacatagg 34118099  T
Q  406 tggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggta 505  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||  |||||||||  ||||||||||||||||||  ||||||||     
T  34118098 tggtgatggatcggtcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatggtttcagtggatctttggttgtgttgatttgtggtg 34117999  T
Q  506 cttcatgg 513  Q
    | ||||||    
T  34117998 cctcatgg 34117991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 308 - 418
Target Start/End: Original strand, 39708920 - 39709029
Alignment:
Q  308 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 407  Q
    ||||||||||||||||||||||||||| ||||| || ||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  39708920 atgcttgtcggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcgcaatataggtg 39709018  T
Q  408 gtgattgatcg 418  Q
    ||||| |||||    
T  39709019 gtgatggatcg 39709029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 316 - 417
Target Start/End: Complemental strand, 34655171 - 34655070
Alignment:
Q  316 cggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattga 415  Q
    ||||| ||||||||||||||||||| ||| |||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||    
T  34655171 cggtgtttgtttggttttcgtgggtctcagactatttgatttgttttctcttttggttgtggtggaggttatgtttgctcgcaacataggtggtgatgga 34655072  T
Q  416 tc 417  Q
    ||    
T  34655071 tc 34655070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 354 - 517
Target Start/End: Original strand, 11407928 - 11408092
Alignment:
Q  354 atttcttttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttc 452  Q
    |||| |||||||||||||| |||| |||||||||||| ||||||||||||| |||||||| |||||| || || ||||||||||| ||| || | ||||     
T  11407928 atttgttttctctcttggtggtgggtggaggttatgtttgctcgcaacataagtggtgatggatcggccacgaaggtggtgatggatcagatatgggtta 11408027  T
Q  453 gcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 517  Q
    ||||||||  |  |||||||||||   ||||||||||||||| ||||||||| ||||||||||||    
T  11408028 gcttatgatatgttatggtttcgacaaatctttggttgtgttggtttgtggtgcttcatggtggt 11408092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 427 - 543
Target Start/End: Complemental strand, 34655083 - 34654967
Alignment:
Q  427 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 526  Q
    ||||||||||| ||||||||||||||||||||||| |  |||||||| |||| ||||||| ||||||| ||||||||| |||||||| ||||||| ||||    
T  34655083 ggtggtgatggatcatatctaggttcgcttatgaaatgttatggttttgatgcatctttgattgtgttggtttgtggtgcttcatggcggttttcatggt 34654984  T
Q  527 ggtactgattttggatc 543  Q
    ||| |||||||||||||    
T  34654983 ggtgctgattttggatc 34654967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 621 - 680
Target Start/End: Complemental strand, 34654889 - 34654830
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34654889 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 34654830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 429 - 539
Target Start/End: Original strand, 26236671 - 26236781
Alignment:
Q  429 tggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtgg 528  Q
    ||||||||| ||| |||| ||||| ||||||| ||  ||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||| || |||    
T  26236671 tggtgatggatcagatctgggttcacttatgacctgttatgggttcgatggatctttggttgcgttggtttgtggtgcttcatggtggttttcatgatgg 26236770  T
Q  529 tactgattttg 539  Q
    | |||||||||    
T  26236771 tgctgattttg 26236781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 427 - 517
Target Start/End: Original strand, 39709015 - 39709105
Alignment:
Q  427 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 517  Q
    ||||||||||| || ||||| |||||||||| |||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  39709015 ggtggtgatggatcgtatctgggttcgcttaggaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatggtggt 39709105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 615891 - 615825
Alignment:
Q  346 actatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 412  Q
    |||||||||||  |||||||||||||||||||||||| |||||| || |||||||||||||||||||    
T  615891 actatttgattcgttttctctcttggttgtggtggagattatgtttgatcgcaacataggtggtgat 615825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 467 - 540
Target Start/End: Complemental strand, 615826 - 615753
Alignment:
Q  467 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 540  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||  ||||||| ||||||| |||| |||||    
T  615826 atggttttgatggatctttggttgtgttagtttgtggtgcttcatgacggttttcatggtggtgctgaatttgg 615753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 617 - 680
Target Start/End: Original strand, 39709180 - 39709243
Alignment:
Q  617 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 680  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  39709180 ctgatatttctttttggtgagggttaatggtgatttttgtggtggttaatggtagttttcgtga 39709243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 34117955 - 34117896
Alignment:
Q  622 gttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 682  Q
    ||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  34117955 gttgctttt-ggtgagggttaatggtggtttttgtagcggtcaatggtagttttggtgatg 34117896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 34118427 - 34118386
Alignment:
Q  131 taaacctagaaccggcgtactcctttcttcctcacacaaatt 172  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  34118427 taaacctaggaccgccgtactcctttcttcctcacacaaatt 34118386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 39708560 - 39708596
Alignment:
Q  149 actcctttcttcctcacacaaatttcaaatccgccgc 185  Q
    ||||||||||||||||| |||||||||||||||||||    
T  39708560 actcctttcttcctcacccaaatttcaaatccgccgc 39708596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 621 - 674
Target Start/End: Complemental strand, 615691 - 615638
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttt 674  Q
    ||||||||||  |||| |||||||||||  |||||||| |||||||||||||||    
T  615691 tgttgctttttagtgatggttaatggtgccttttgtggcggtcaatggtagttt 615638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 616157 - 616108
Alignment:
Q  131 taaacctagaaccggcgtactcctttcttcctcacacaaatttcaaatcc 180  Q
    ||||||||| || | | ||||||||||||||||||||||||| |||||||    
T  616157 taaacctaggactgccctactcctttcttcctcacacaaattccaaatcc 616108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 627 - 676
Target Start/End: Complemental strand, 11814744 - 11814695
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 676  Q
    |||| ||||||| ||||||||| |||||||| |||| |||||||||||||    
T  11814744 tttttggtgaggattaatggtggtttttgtgatggttaatggtagttttg 11814695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 675
Target Start/End: Original strand, 2077483 - 2077531
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagtttt 675  Q
    |||| ||||||| ||||||||| ||||||||||||| |||| |||||||    
T  2077483 tttttggtgaggattaatggtggtttttgtggtggttaatgatagtttt 2077531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 679
Target Start/End: Original strand, 14351174 - 14351226
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 679  Q
    |||| ||||||  ||||||||| ||||||||||||| | ||||||||||||||    
T  14351174 tttttggtgagaattaatggtggtttttgtggtggttagtggtagttttggtg 14351226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 39708650 - 39708690
Alignment:
Q  182 ccgctccactgtacctttccgacgtgcggttgctctctatc 222  Q
    |||| |||| ||||||||||||||| |||||||||||||||    
T  39708650 ccgcaccaccgtacctttccgacgtacggttgctctctatc 39708690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 3e-56; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 317 - 540
Target Start/End: Complemental strand, 3302790 - 3302567
Alignment:
Q  317 ggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgat 416  Q
    |||||||||||||||||||||| | ||| |||||||||||  ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  3302790 ggtggttgtttggttttcgtggatctcagactatttgattcatttcctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgatagat 3302691  T
Q  417 cggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtgg 516  Q
    || ||| ||||||||||||   |||||||||| ||||||||| ||||  ||| |||||||||||||||||||||| || || |||||| |||||||   |    
T  3302690 cgatcacgatggtggtgatacatcatatctagattcgcttattaactgttatagtttcgatggatctttggttgtattggtatgtggtgcttcatgacag 3302591  T
Q  517 ttttcttggtggtactgattttgg 540  Q
    ||||| |||||||  |||||||||    
T  3302590 ttttcatggtggtgttgattttgg 3302567  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 621 - 680
Target Start/End: Original strand, 11698554 - 11698613
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11698554 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 11698613  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 621 - 680
Target Start/End: Complemental strand, 3302486 - 3302427
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 680  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||    
T  3302486 tgttgctttttggtgagtgttaatggtggtttttgtggtggtcaatggtagttttggtga 3302427  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 679
Target Start/End: Complemental strand, 31039052 - 31039000
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 679  Q
    |||| |||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  31039052 ttttcggtgaggagtaatggtggtttttgtggtggttaatggtagttttggtg 31039000  T

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Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 467 - 540
Target Start/End: Original strand, 18269763 - 18269836
Alignment:
Q  467 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 540  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||  |||||||||    
T  18269763 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggtggttttcatggtggtgttgattttgg 18269836  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 621 - 680
Target Start/End: Complemental strand, 43275890 - 43275830
Alignment:
Q  621 tgttgcttttaggtgagggttaatggtgattttt-gtggtggtcaatggtagttttggtga 680  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  43275890 tgttgctttttggtgagggttaatggtggttttttgtggtggtcaatggtagttttggtga 43275830  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 685
Target Start/End: Original strand, 18269919 - 18269971
Alignment:
Q  633 gtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatg 685  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  18269919 gtgatggttaatggtggtttttgtggtggtcaatggaagttttggtgacgatg 18269971  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 18269711 - 18269764
Alignment:
Q  359 ttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 412  Q
    |||||||||||| || || ||||||||||||||| ||| |||||||||||||||    
T  18269711 ttttctctcttgattatgatggaggttatgtctgatcgaaacataggtggtgat 18269764  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 676
Target Start/End: Complemental strand, 31699270 - 31699221
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 676  Q
    |||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  31699270 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttg 31699221  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 512
Target Start/End: Complemental strand, 43276045 - 43275999
Alignment:
Q  466 tatggtttcgatggatctttggttgtgttagtttgtggtacttcatg 512  Q
    |||| |||||||| ||||||||||||||| ||||||||| |||||||    
T  43276045 tatgatttcgatgaatctttggttgtgttggtttgtggtgcttcatg 43275999  T

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Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 633 - 676
Target Start/End: Complemental strand, 31261 - 31218
Alignment:
Q  633 gtgagggttaatggtgatttttgtggtggtcaatggtagttttg 676  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  31261 gtgatggttaatggtgatttttgtggtggttaatggtagttttg 31218  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 679
Target Start/End: Complemental strand, 2989 - 2938
Alignment:
Q  627 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 679  Q
    |||| |||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  2989 tttttggtgaggagtaatggtgatttt-gtggtggttaatggtagttttggtg 2938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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