View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_70 (Length: 368)
Name: NF18178_low_70
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 22 - 363
Target Start/End: Complemental strand, 11811401 - 11811060
Alignment:
| Q |
22 |
gatgttaacggaaacattctaaatagagaaatgatgggtgaggatctattttgggctataagaggaggtggaggatcaagctttggagtgattactgcat |
121 |
Q |
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| T |
11811401 |
gatgttaacggaaacattctaaatagagaaatgatgggtgaagatttattttgggctataagaggaggtggaggatcaagctttggagtgattactgcat |
11811302 |
T |
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| Q |
122 |
ggaaagtcaagcttgtacgcgttccttcaatagtgacaattttcgatattccaaatagattagatcaaaatgctactacccttttcatgaaatggcaaat |
221 |
Q |
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| T |
11811301 |
ggaaagtcaagcttgtacgtgtccctttaatagtgacaattttcgatattccaaatagattagatcaaaatgctactacccttttcatgaaatggcaaat |
11811202 |
T |
|
| Q |
222 |
tatagcaaacaagcttcctagtgaactttttcttcactcagttttgggaatagctgctaattcatcttctgatagtggaaaaactgtaactgtttctttc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11811201 |
tatagcaaacaagcttcctagtgaactttttcttcactcagttttgggaatagctgctaattcatcttctgatagtggaaaaactgtaactgtttctttc |
11811102 |
T |
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| Q |
322 |
acaggactgtatcttgggaaatccgacgacttgctacctttg |
363 |
Q |
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| T |
11811101 |
acaggactgtatcttgggaaatccgacgacttgctacctttg |
11811060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 11803659 - 11803318
Alignment:
| Q |
20 |
tagatgttaacggaaacattctaaatagagaaatgatgggtgaggatctattttgggctataagaggaggtggaggatcaagctttggagtgattactgc |
119 |
Q |
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| T |
11803659 |
tagatgttaatggaaagatcctaaatagaaaattgatgggtgaggatctattttgggctataagaggaggtggagggtcaagctttggagtgattactgc |
11803560 |
T |
|
| Q |
120 |
atggaaagtcaagcttgtacgcgttccttcaatagtgacaattttcgatattccaaatagattagatcaaaatgctactacccttttcatgaaatggcaa |
219 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||| |||||||||| || |||| | |||||||||||||||||||||||||||||||| |
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| T |
11803559 |
atggaaagtcaagcttgtacaagttccttcaatagtgacagttttcaatattccaaagagtttaggtgaaaatgctactacccttttcatgaaatggcaa |
11803460 |
T |
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| Q |
220 |
attatagcaaacaagcttcctagtgaactttttcttcactcagttttgggaatagctgctaattcatcttctgatagtggaaaaactgtaactgtttctt |
319 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||||||||| |||||||||||||| || ||||| |
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| T |
11803459 |
attatagcaaacaagcttcctagtgaactttttctgcactcagttataggactagctgctaattcatcttctgatggtggaaaaactgtacttgcttctt |
11803360 |
T |
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| Q |
320 |
tcacaggactgtatcttgggaaatccgacgacttgctacctt |
361 |
Q |
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| T |
11803359 |
tcacaggactatatcttgggaaatctgacaacttgcttcctt |
11803318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 37954216 - 37954272
Alignment:
| Q |
54 |
gatgggtgaggatctattttgggctataagaggaggtggaggatcaagctttggagt |
110 |
Q |
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| T |
37954216 |
gatgggtgaggatctgttttgggctattagaggaggtggaggagcaagctttggagt |
37954272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 38061899 - 38061844
Alignment:
| Q |
55 |
atgggtgaggatctattttgggctataagaggaggtggaggatcaagctttggagt |
110 |
Q |
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|||||||||||| | ||||||||||| ||||||||||||||| |||| |||||||| |
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| T |
38061899 |
atgggtgaggattttttttgggctattagaggaggtggaggagcaagttttggagt |
38061844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 38145746 - 38145786
Alignment:
| Q |
55 |
atgggtgaggatctattttgggctataagaggaggtggagg |
95 |
Q |
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||||| |||||||||||||||||||||||||| |||||||| |
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| T |
38145746 |
atgggagaggatctattttgggctataagaggtggtggagg |
38145786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 38125623 - 38125678
Alignment:
| Q |
55 |
atgggtgaggatctattttgggctataagaggaggtggaggatcaagctttggagt |
110 |
Q |
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|||||||| || || ||||||||||| ||||||||||||||| |||| |||||||| |
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| T |
38125623 |
atgggtgaagaacttttttgggctattagaggaggtggaggagcaagttttggagt |
38125678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 38129576 - 38129631
Alignment:
| Q |
55 |
atgggtgaggatctattttgggctataagaggaggtggaggatcaagctttggagt |
110 |
Q |
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||||| || ||||| ||||||||||| ||||||||||||||| |||| |||||||| |
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| T |
38129576 |
atgggggaagatcttttttgggctattagaggaggtggaggagcaagttttggagt |
38129631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 38086393 - 38086445
Alignment:
| Q |
55 |
atgggtgaggatctattttgggctataagaggaggtggaggatcaagctttgg |
107 |
Q |
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|||||||||||| | ||||||||||| ||||| ||||||||| |||| ||||| |
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| T |
38086393 |
atgggtgaggatttcttttgggctattagaggtggtggaggagcaagttttgg |
38086445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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