View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_71 (Length: 365)
Name: NF18178_low_71
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 14008793 - 14009116
Alignment:
| Q |
18 |
tgaagttgaaaaagccatagagcaattagggaaatcaaggtagtctcacttttaaatcagattttgatttcaccatctatgaattattttgtgcatttct |
117 |
Q |
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| T |
14008793 |
tgaagttgaaaaagccatagagcaattaggaaaatcaaggtagtctcacttttaaatcagattttgatttcaccatctatgaattattttgtgcatttct |
14008892 |
T |
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| Q |
118 |
ctacagaatatttatctatgttttcttgaactatgtttgctaatagtaaacttaatgaatggtttctctatagaatattttgaattttatttactgatag |
217 |
Q |
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| T |
14008893 |
ctatagaatatttatctatgttttcttgaactatgtttgctaatagtaaacttaatgaatggtttctctatagaatattttgaattttatttactgatag |
14008992 |
T |
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| Q |
218 |
caacttcagtgttatatgtt-aggttcaattatttagtatagttagttaggagnnnnnnnngtgaacaattagataacatgattactaacatattggtaa |
316 |
Q |
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| T |
14008993 |
caacttcagtgttatatgttaaggttcaattatttagtatagttagttaggagaaaaaaaagtgaataattagataacatgattactaacatattggtaa |
14009092 |
T |
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| Q |
317 |
accattcatgattttaacgctgaa |
340 |
Q |
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| T |
14009093 |
accattcatgattttaacgctgaa |
14009116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 192 - 330
Target Start/End: Original strand, 40910504 - 40910644
Alignment:
| Q |
192 |
atattttgaattttatttactgatagcaacttcagtgttatatgtta-ggttcaatt-atttagtatagttagttaggagnnnnnnnngtgaacaattag |
289 |
Q |
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| T |
40910504 |
atattttgagttctatttactaatagcaacctcagtgttgtatgttaaggttcaatttatttagtatggttagttaggagaaaaaaaaatgaaccattcg |
40910603 |
T |
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| Q |
290 |
ataacatgattactaacatattggtaaaccattcatgattt |
330 |
Q |
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| T |
40910604 |
ataacatgattactaacatattgataaaccattcatgattt |
40910644 |
T |
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