View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_72 (Length: 365)
Name: NF18178_low_72
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_72 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 39703611 - 39703959
Alignment:
| Q |
1 |
ttacttattttagccgaaatggtaggaccccttctcagaccctgtatgcgggagctttggtacatcggacagccaaattttggttatttattcgttaaaa |
100 |
Q |
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| T |
39703611 |
ttacttattttagccgaaatggtaggaccccttctcagactctgtatgcgggagctttagtgcatcgaactgccaaattttggttatttattcgttaaaa |
39703710 |
T |
|
| Q |
101 |
tactctaagtaggttgtttatgcgttaaaataatctaagttgttagtcggagatgtcaggaaactgagtaaatgataagtcaaagtaaagttagtagtct |
200 |
Q |
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| T |
39703711 |
tattctaaataggttgtttatgcgttaaaataatctaagttgttagtcgaagatgtcaggtaactgagtaaatgataagtcaaagtaaagttagtagtct |
39703810 |
T |
|
| Q |
201 |
gcatagacgaatctttctcggtctgcaaaaacattatgttaatctatatgcaaatgcaggttcttcaatcgcgcaactctgataactgatgcagatctaa |
300 |
Q |
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| T |
39703811 |
gcatagacgaatctttctcggtctgcaaaaacattatgttaatctatatgcaaatgcaggttcttcaatcgcgcaactctgataactgatgcagacctaa |
39703910 |
T |
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| Q |
301 |
aatcagatggctcaattaagaaatcatcatggaaactatgcacagttca |
349 |
Q |
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| T |
39703911 |
aatcagatggctcaattaagaaatcatcatggaaactatgcacagttca |
39703959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 242 - 349
Target Start/End: Original strand, 39694940 - 39695047
Alignment:
| Q |
242 |
atctatatgcaaatgcaggttcttcaatcgcgcaactctgataactgatgcagatctaaaatcagatggctcaattaagaaatcatcatggaaactatgc |
341 |
Q |
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| T |
39694940 |
atctatatgcaaatgcaggttcttcaatcgggcatctctaataactgatgcagacctaaaatcagatggctcagttaaaaaatcatcatggagactatgc |
39695039 |
T |
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| Q |
342 |
acagttca |
349 |
Q |
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|||||||| |
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| T |
39695040 |
acagttca |
39695047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 246 - 349
Target Start/End: Complemental strand, 39929519 - 39929416
Alignment:
| Q |
246 |
atatgcaaatgcaggttcttcaatcgcgcaactctgataactgatgcagatctaaaatcagatggctcaattaagaaatcatcatggaaactatgcacag |
345 |
Q |
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||||||||||||||||| ||||| || || |||| |||||||||||||| ||| | ||| ||||| ||||||||||||||||||||| |||||||||| |
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| T |
39929519 |
atatgcaaatgcaggtttttcaaccgtgccgctctaataactgatgcagacctacactcaaatggcacaattaagaaatcatcatggagactatgcacaa |
39929420 |
T |
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| Q |
346 |
ttca |
349 |
Q |
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|||| |
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| T |
39929419 |
ttca |
39929416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 255 - 349
Target Start/End: Complemental strand, 38062191 - 38062097
Alignment:
| Q |
255 |
tgcaggttcttcaatcgcgcaactctgataactgatgcagatctaaaatcagatggctcaattaagaaatcatcatggaaactatgcacagttca |
349 |
Q |
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||||||||||||||||| ||| || | |||||||||||||| ||||| |||||||||||| ||||||| |||||||||| ||||||||||||||| |
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| T |
38062191 |
tgcaggttcttcaatcgtgcagctttaataactgatgcagacctaaactcagatggctcagttaagaattcatcatggagactatgcacagttca |
38062097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 245 - 333
Target Start/End: Complemental strand, 38180933 - 38180845
Alignment:
| Q |
245 |
tatatgcaaatgcaggttcttcaatcgcgcaactctgataactgatgcagatctaaaatcagatggctcaattaagaaatcatcatgga |
333 |
Q |
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| T |
38180933 |
tatatgcaaatgaaagttattcaatcgtgcaactctaataattgatgcagacctaaactcagatggctaagttaagaagtcatcatgga |
38180845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 45264462 - 45264419
Alignment:
| Q |
17 |
aaatggtaggaccccttctcagaccctg--tatgcgggagcttt |
58 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
45264462 |
aaatggtgggaccccttctcagaccctgcatatgcgggagcttt |
45264419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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