View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_78 (Length: 355)
Name: NF18178_low_78
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_78 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 17111211 - 17111027
Alignment:
| Q |
17 |
aacctgtgcatgtgtgagacgctgagagtatttgttaaaatccttggaccatcgggaaagccgcaacaggcccgactgcaaattaattgtccccattgcg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17111211 |
aacctgtgcatgtgtgagacgctgagagtatttgttaaaatccttggaccatcgggaaagccgcaacaggcccgactgcaaattaattgtccccattgcg |
17111112 |
T |
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| Q |
117 |
agtgatgtgcgcacatcattgtcggaggagaatgaatattcatagaaaccacggccaaggggaatcatatgccattgacccttag |
201 |
Q |
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| T |
17111111 |
agtgatgtgcgcacatcattgtcggaggagaatgaatattcatagaaaccacggccaaggggaatcatatgccattgacccttag |
17111027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 197 - 337
Target Start/End: Complemental strand, 17110870 - 17110730
Alignment:
| Q |
197 |
cttagtcttccattgcttcgatagctttgttgatatttctttggtggtgcatggcttgtcgcccttattcaagaacagcctttggataaggcattggtgc |
296 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17110870 |
cttagtcttccatttcttcgatagctttgttgatatttctttggtggtgcatggcttgtcgcccttattcaagaacagcctttggataaggcagtggtgc |
17110771 |
T |
|
| Q |
297 |
actagtaacagtagccgtaggtgagagcacttgcgcaaagt |
337 |
Q |
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| T |
17110770 |
actagtaacagtagccgtaggtgagagcacttgcgcaaagt |
17110730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 23869483 - 23869685
Alignment:
| Q |
17 |
aacctgtgcatgtgtgagacgctgagagtatttgttaaaatccttggaccatcgggaaagccgcaacaggcccgactgcaaattaattgtccccattgcg |
116 |
Q |
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| T |
23869483 |
aacctgcgcatgtgtgagacgctgagaatatttattaaaatccttggaccattgggaaagacgcaatagtcccagcttcaagttaactctccccattgca |
23869582 |
T |
|
| Q |
117 |
agtgatgtgcgcacatcattgtcggaggagaatgaatattcatagaaaccacggccaaggggaatcatatgccattgacccttagtcttccattgcttcg |
216 |
Q |
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|| || ||| ||||||| | | ||||||||||| | |||||||| ||||| || |||| |||| ||||||| ||| ||||| ||||| || |||| |
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| T |
23869583 |
agagaagtgtgcacatcgtcctttgaggagaatgagaactcatagaatccacgaccgagggagatcaaatgccatgaaccattagttttccagtgattcg |
23869682 |
T |
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| Q |
217 |
ata |
219 |
Q |
| |
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||| |
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| T |
23869683 |
ata |
23869685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 271
Target Start/End: Complemental strand, 17705103 - 17704856
Alignment:
| Q |
24 |
gcatgtgtgagacgctgagagtatttgttaaaatccttggaccatcgggaaagccgcaacaggcccgactgcaaattaattgtccccattgcgagtgatg |
123 |
Q |
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|||||||| |||| | ||| ||||| |||||||||||||||||| |||||| ||||| | | || || | |||| ||||||||||| ||||| | |
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| T |
17705103 |
gcatgtgtcagacaccaagaatatttattaaaatccttggaccattaggaaagacgcaatattctcggcttttagttaaccgtccccattgcaagtgaag |
17705004 |
T |
|
| Q |
124 |
tgcgcacatcattgtcggaggagaatgaatattcatagaaaccacggccaaggggaatcatatgccattgacccttagtcttccattgcttcgatagctt |
223 |
Q |
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||| | ||| | || |||||||||||| | || ||||| |||| |||||| | ||||||||||| |||||||||| ||||| |||| ||||| || |
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| T |
17705003 |
cgcggagatcgtcatctgaggagaatgaaaactcgtagaatccactgccaagagatatcatatgccacagacccttagttttccagtgctgcgataattt |
17704904 |
T |
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| Q |
224 |
tgttgatatttctttggtggtgcatggcttgtcgcccttattcaagaa |
271 |
Q |
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| | | ||||||||| || ||| | |||||||| ||||| |||||||| |
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| T |
17704903 |
tttggttatttctttagttgtgtacggcttgtcacccttgttcaagaa |
17704856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 28667613 - 28667545
Alignment:
| Q |
17 |
aacctgtgcatgtgtgagacgctgagagtatttgttaaaatccttggaccatcgggaaagccgcaacag |
85 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||| |||||| |
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| T |
28667613 |
aacctgcgcatgtgtgagacgctgagagtacttgttgaaatccttggcccatctagaaagcctcaacag |
28667545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 16176810 - 16176901
Alignment:
| Q |
24 |
gcatgtgtgagacgctgagagtatttgttaaaatccttggaccatcgggaaagccgcaacaggcccgactgcaaattaattgtccccattgc |
115 |
Q |
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||||| ||||| |||||| |||| || ||||| ||||||||||| ||||| ||||||||||||||||||| | ||||| ||||||||||| |
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| T |
16176810 |
gcatgagtgaggcgctgaaagtagttattaaagtccttggaccaacgggagagccgcaacaggcccgacttaagattaacagtccccattgc |
16176901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 10327303 - 10327419
Alignment:
| Q |
17 |
aacctgtgcatgtgtgagacgctgagagtatttgttaaaatccttggaccatcgggaaagccgcaacaggcccgactgcaaattaattgtccccattgcg |
116 |
Q |
| |
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|||||| |||||||| |||| ||||| ||||| |||||||| ||||||||| |||||| |||||||| ||| || ||| |||| |||| ||||| | |
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| T |
10327303 |
aacctgcgcatgtgtcagacattgagaatatttattaaaatctttggaccatttggaaagacgcaacagttccgtcttcaagttaactgtctccatttca |
10327402 |
T |
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| Q |
117 |
agtgatgtgcgcacatc |
133 |
Q |
| |
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|| || ||||||||||| |
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| T |
10327403 |
agagaagtgcgcacatc |
10327419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 23645921 - 23645869
Alignment:
| Q |
24 |
gcatgtgtgagacgctgagagtatttgttaaaatccttggaccatcgggaaag |
76 |
Q |
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|||||||| ||||||||||| ||||| ||||||||||||||||| ||||||| |
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| T |
23645921 |
gcatgtgtcagacgctgagaatatttaataaaatccttggaccattgggaaag |
23645869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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