View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_low_82 (Length: 341)

Name: NF18178_low_82
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_low_82
NF18178_low_82
[»] chr6 (1 HSPs)
chr6 (33-324)||(30942946-30943239)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 33 - 324
Target Start/End: Complemental strand, 30943239 - 30942946
Alignment:
Q  33 ctatacacgtctaaaaccaacattacgtttgagcggaactgaactcggatttcttaagcaaggtctctggtttgagtcttctcgatnnnnnnngtggttg 132  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||     
T  30943239 ctatacacgtctaaaaccaacattacgttcgagtggaactgaactcggatttcttaagcaaggtctctggtttgagtcttctcgataaaaaaagtggtt- 30943141  T
Q  133 agaggagagatcctgctaaaggtgttcggcgaggtctgactaaatatttctcatagacaattttggaatttcctttttgaaaagcacacaccaaaatgat 232  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30943140 agaggagagatcctgctaaaggtgttcggcaaggtctgaccaaatatttctcatagacaattttggaattccctttttgaaaagcacacaccaaaatgat 30943041  T
Q  233 gtgcatgtttctctagtgtaatttgtctatc---tattttcnnnnnnnnngtccatgcatctatttagaaaacatgtttgatggtctctgctcct 324  Q
    ||| |||||||||||||||||||||||||||   | ||||          |||||||||||||||||||||||||||||||||||||||| ||||    
T  30943040 gtgtatgtttctctagtgtaatttgtctatcaatttttttttttttttttgtccatgcatctatttagaaaacatgtttgatggtctctgatcct 30942946  T

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