View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_83 (Length: 340)
Name: NF18178_low_83
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_83 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 3320973 - 3320650
Alignment:
| Q |
1 |
aaaggttaaccttctaaaaacatcttgcaaatctacttgcaatccttttttacaagcattatcaagaaacaaaaggagacaactatcaannnnnnnctca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3320973 |
aaaggttaaccttctaaaaacatcttgcaaatctacttgcaatccttttttacaagcattatcaagaaacaaaaggagacaactatcaatttttttctca |
3320874 |
T |
|
| Q |
101 |
gtggttttgtnnnnnnntaccttaaaattttcctgcttgaagactgaatgaagtagagttctgttgtacttccacgcatcgaaatcagacctgaaaattc |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3320873 |
gtggttttgtaaaaaaataccttaaaattttcctgcttgaagactgaatgaagtagagttctgttgtacttccacgcatcgaaatcagacctgaaaattc |
3320774 |
T |
|
| Q |
201 |
cttctccaaggggttcaaaaatctctctgaaattttttcctttaccatagttttcaaattttgtgcttgtgatgtgttgcacgttcatgggatcacttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3320773 |
cttctccaaggggttcaaaaatctctctgaaattttttcctttaccatagttttcaaattttgtgcttgtgatgtgttgcacgttcatgggatcacttgt |
3320674 |
T |
|
| Q |
301 |
atacacaatcttcatgtttgttaa |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
3320673 |
atacacaatcttcatgtttgttaa |
3320650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 12176564 - 12176887
Alignment:
| Q |
1 |
aaaggttaaccttctaaaaacatcttgcaaatctacttgcaatccttttttacaagcattatcaagaaacaaaaggagacaactatcaannnnnnnctca |
100 |
Q |
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| T |
12176564 |
aaaggttaacctttgaaaaatatcttgcaaatccacttgcatcccttttttacaagcatgatcaagaaatacaagaagaccactaaatagttttttctca |
12176663 |
T |
|
| Q |
101 |
gtggttttgtnnnnnnntaccttaaaattttcctgcttgaagactgaatgaagtagagttctgttgtacttccacgcatcgaaatcagacctgaaaattc |
200 |
Q |
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||||||||| ||||| |||| |||||| |||||| | |||||||||||| ||||||||||||||||| | |||||||||| ||||||| |
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| T |
12176664 |
atggttttgtgaataaatacctgaaaactttccttcttgaaaattgaatgaagtagtgttctgttgtacttccaaatgtgagaatcagacctaaaaattc |
12176763 |
T |
|
| Q |
201 |
cttctccaaggggttcaaaaatctctctgaaattttttcctttaccatagttttcaaattttgtgcttgtgatgtgttgcacgttcatgggatcacttgt |
300 |
Q |
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| T |
12176764 |
catctccaaggatttcaaaaatctcgctgaaatcgtttcctttcccatagttttcgaattttgtgcttgtgatgtgttgcacgttcatggggtcactggt |
12176863 |
T |
|
| Q |
301 |
atacacaatcttcatgtttgttaa |
324 |
Q |
| |
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| | ||| |||||||||||||| |
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| T |
12176864 |
gcaaagaatgttcatgtttgttaa |
12176887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 118 - 324
Target Start/End: Original strand, 12165156 - 12165362
Alignment:
| Q |
118 |
taccttaaaattttcctgcttgaagactgaatgaagtagagttctgttgtacttccacgcatcgaaatcagacctgaaaattccttctccaaggggttca |
217 |
Q |
| |
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||||| ||||||| |||||||||| | |||||||||||| |||||||||||||||| | |||||||||| ||||||||||||||||| |||| |
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| T |
12165156 |
tacctgaaaatttccctgcttgaaaattgaatgaagtagctttctgttgtacttccaaatgtgtgaatcagacctaaaaattccttctccaagaacttca |
12165255 |
T |
|
| Q |
218 |
aaaatctctctgaaattttttcctttaccatagttttcaaattttgtgcttgtgatgtgttgcacgttcatgggatcacttgtatacacaatcttcatgt |
317 |
Q |
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|||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||| || | | ||| ||||||| |
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| T |
12165256 |
aaaatctctctgaaatcatttcctttcccgtagttttcgaattttgtgcttgtgatgtgttgcacgttcatggggtcactggtgcaaagaatgttcatgt |
12165355 |
T |
|
| Q |
318 |
ttgttaa |
324 |
Q |
| |
|
||||||| |
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|
| T |
12165356 |
ttgttaa |
12165362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12165039 - 12165107
Alignment:
| Q |
1 |
aaaggttaaccttctaaaaacatcttgcaaatctacttgcaatccttttttacaagcattatcaagaaa |
69 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| ||||||| || |||||| |||||| ||||||||| |
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| T |
12165039 |
aaaggttaacctttgaaaaatatcttgcaaatccacttgcaccccatttttagaagcatgatcaagaaa |
12165107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 324
Target Start/End: Original strand, 36668898 - 36669217
Alignment:
| Q |
5 |
gttaaccttctaaaaacatcttgcaaatctacttgcaatccttttttacaagcattatcaagaaacaaaaggagacaactatcaannnnnnnctcagtgg |
104 |
Q |
| |
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||||||||| ||||||||||||||| || ||||||| |||||||||||||||| ||||||||||| ||| ||||||||| || |||| ||| |
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| T |
36668898 |
gttaacctttgaaaaacatcttgcaagtcaacttgcatcccttttttacaagcatgatcaagaaacataagaagacaactagaaatttttttctcaatgg |
36668997 |
T |
|
| Q |
105 |
ttttgtnnnnnnntaccttaaaattttcctgcttgaagactgaatgaagtagagttctgttgtacttccacgcatcgaaatcagacctgaaaattccttc |
204 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| | |||||||| || ||||| ||||||||||| | | |||||||||||||||| || || |
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| T |
36668998 |
ttttgtgaagaaataccttaaaactttcctgcttgaaaatggaatgaaggagtgttctattgtacttccaagtgtgagaatcagacctgaaaatcccatc |
36669097 |
T |
|
| Q |
205 |
tccaaggggttcaaaaatctctctgaaattttttcctttaccatagttttcaaattttgtgcttgtgatgtgttgcacgttcatgggatcacttgtatac |
304 |
Q |
| |
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||||||| |||||| |||||| |||| | |||||||| || ||||||||||| |||| |||||||| ||||||||||||| ||| ||||| || | |
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| T |
36669098 |
tccaaggacttcaaatatctctgtgaattcatttcctttcccgtagttttcaaaacttgtacttgtgatatgttgcacgttcaaggggtcactggtgaaa |
36669197 |
T |
|
| Q |
305 |
acaatcttcatgtttgttaa |
324 |
Q |
| |
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||||| |||||||||||||| |
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| T |
36669198 |
acaatattcatgtttgttaa |
36669217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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