View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_85 (Length: 335)
Name: NF18178_low_85
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_85 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 32000428 - 32000118
Alignment:
| Q |
18 |
agtctgacctccgtacatgaaacacagtctttccaaccacctaacactgcaaggcatatctgaccatactattactatgtatgttcttgcattttcacaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32000428 |
agtctgacctccgtacatgaaacacagtctttccaaccacctaacactgcaaggcatatctgaccatactattactatgtgtgttcttgcattttcacaa |
32000329 |
T |
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| Q |
118 |
tcaatatttatatcaacaataaaatggaaagttttgaaattaaagttttgaccatgctctttaatttgtattgtactacaatccttactcaccatgtgca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32000328 |
tcaatatttatatcaacaataaaatggaaagttttgaaattaaagttttgaccatggtctttaatttgtattgtactacaatccttactcaccatgtgca |
32000229 |
T |
|
| Q |
218 |
acaattcatttatt-ttttaccttaccaattcattacacnnnnnnnaccttagcaattcatatattatttttgtagtgctcannnnnnnaattttggatt |
316 |
Q |
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|||||| ||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
32000228 |
acaatttatttatttttttaccttagcaattcattacacttcttttaccttagcaattcatatattatttttgtagtgcacatttttttaattttggatt |
32000129 |
T |
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| Q |
317 |
atcctttgtta |
327 |
Q |
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||||||||||| |
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| T |
32000128 |
atcctttgtta |
32000118 |
T |
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