View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_low_88 (Length: 329)

Name: NF18178_low_88
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_low_88
NF18178_low_88
[»] chr8 (22 HSPs)
chr8 (110-312)||(43035997-43036180)
chr8 (133-308)||(4731237-4731411)
chr8 (133-285)||(4733404-4733555)
chr8 (196-312)||(42435620-42435736)
chr8 (196-312)||(30142983-30143099)
chr8 (174-312)||(15212405-15212543)
chr8 (173-312)||(4743604-4743744)
chr8 (227-312)||(27810970-27811055)
chr8 (196-311)||(40221188-40221302)
chr8 (222-311)||(22975983-22976072)
chr8 (174-312)||(12703050-12703187)
chr8 (219-312)||(11383452-11383545)
chr8 (174-312)||(1746629-1746767)
chr8 (232-312)||(19945750-19945831)
chr8 (232-312)||(31217933-31218014)
chr8 (172-272)||(33351788-33351888)
chr8 (232-312)||(34254739-34254820)
chr8 (198-312)||(1345782-1345895)
chr8 (266-312)||(4283039-4283085)
chr8 (219-312)||(10014823-10014916)
chr8 (232-312)||(19175305-19175386)
chr8 (232-311)||(42497891-42497971)
[»] chr3 (40 HSPs)
chr3 (140-312)||(44331154-44331326)
chr3 (164-312)||(34490624-34490771)
chr3 (174-312)||(49200080-49200218)
chr3 (164-312)||(31340671-31340819)
chr3 (133-307)||(44331863-44332026)
chr3 (164-312)||(46173126-46173272)
chr3 (174-308)||(5236872-5237005)
chr3 (172-312)||(29812680-29812820)
chr3 (219-312)||(6096229-6096322)
chr3 (174-312)||(7764071-7764209)
chr3 (233-312)||(4569411-4569490)
chr3 (174-269)||(23410784-23410879)
chr3 (226-312)||(51398497-51398583)
chr3 (219-312)||(55302594-55302686)
chr3 (174-312)||(7761884-7762021)
chr3 (220-312)||(43402419-43402510)
chr3 (219-312)||(27038485-27038579)
chr3 (255-309)||(40912819-40912873)
chr3 (220-310)||(43404364-43404453)
chr3 (168-209)||(30235614-30235655)
chr3 (232-312)||(45094840-45094921)
chr3 (173-312)||(36018262-36018401)
chr3 (238-312)||(5258555-5258630)
chr3 (196-245)||(24694713-24694762)
chr3 (172-312)||(29810485-29810625)
chr3 (163-208)||(47303756-47303801)
chr3 (173-237)||(23392301-23392365)
chr3 (174-312)||(35925934-35926072)
chr3 (174-312)||(37726118-37726256)
chr3 (219-312)||(8370038-8370132)
chr3 (219-312)||(16264792-16264886)
chr3 (174-280)||(40735048-40735152)
chr3 (219-280)||(40734160-40734221)
chr3 (255-312)||(54593186-54593243)
chr3 (241-312)||(40592353-40592424)
chr3 (232-312)||(9636539-9636620)
chr3 (219-280)||(27027183-27027244)
chr3 (219-272)||(30709344-30709397)
chr3 (219-280)||(47923451-47923512)
chr3 (174-312)||(33386180-33386318)
[»] scaffold0066 (1 HSPs)
scaffold0066 (175-312)||(20826-20963)
[»] chr7 (30 HSPs)
chr7 (130-312)||(48489007-48489187)
chr7 (133-258)||(48491178-48491302)
chr7 (172-312)||(47674354-47674494)
chr7 (172-312)||(47676547-47676687)
chr7 (172-312)||(43863878-43864018)
chr7 (174-312)||(27347543-27347680)
chr7 (219-312)||(4585825-4585918)
chr7 (173-312)||(6360541-6360679)
chr7 (164-258)||(34311285-34311378)
chr7 (174-258)||(1113296-1113380)
chr7 (174-312)||(23554659-23554797)
chr7 (226-312)||(18126316-18126401)
chr7 (219-312)||(2389738-2389831)
chr7 (173-286)||(48599933-48600045)
chr7 (173-312)||(29608153-29608292)
chr7 (173-312)||(14070244-14070383)
chr7 (173-312)||(14380272-14380411)
chr7 (232-312)||(4178451-4178532)
chr7 (219-312)||(32358465-32358558)
chr7 (174-312)||(19495590-19495728)
chr7 (225-312)||(4538962-4539049)
chr7 (250-312)||(2647288-2647350)
chr7 (174-312)||(26416933-26417070)
chr7 (225-306)||(4796235-4796316)
chr7 (174-312)||(21983686-21983824)
chr7 (263-312)||(31733361-31733410)
chr7 (196-280)||(25767398-25767481)
chr7 (178-312)||(2479779-2479913)
chr7 (219-312)||(49092134-49092229)
chr7 (173-258)||(2761746-2761830)
[»] chr4 (40 HSPs)
chr4 (158-312)||(54882425-54882579)
chr4 (174-312)||(6655357-6655495)
chr4 (164-312)||(26363657-26363804)
chr4 (173-308)||(5429298-5429433)
chr4 (173-312)||(26176035-26176173)
chr4 (174-312)||(52095771-52095909)
chr4 (173-312)||(2209121-2209259)
chr4 (173-312)||(37740245-37740383)
chr4 (177-312)||(50674475-50674609)
chr4 (171-312)||(12745827-12745967)
chr4 (223-312)||(9927872-9927961)
chr4 (177-312)||(46570155-46570289)
chr4 (171-312)||(12739949-12740089)
chr4 (171-312)||(12748155-12748295)
chr4 (172-312)||(34570825-34570955)
chr4 (232-312)||(56179035-56179116)
chr4 (236-312)||(35661902-35661978)
chr4 (174-272)||(3909716-3909814)
chr4 (174-312)||(6742931-6743068)
chr4 (224-312)||(5370486-5370575)
chr4 (236-312)||(41639028-41639104)
chr4 (255-312)||(50263326-50263383)
chr4 (236-312)||(27417580-27417656)
chr4 (226-312)||(5268766-5268853)
chr4 (241-312)||(36314812-36314883)
chr4 (241-312)||(36329021-36329092)
chr4 (213-312)||(40630425-40630523)
chr4 (266-312)||(29254205-29254251)
chr4 (168-209)||(8653109-8653150)
chr4 (168-209)||(8664916-8664957)
chr4 (219-280)||(16628431-16628492)
chr4 (220-280)||(3778025-3778085)
chr4 (242-312)||(8689079-8689150)
chr4 (174-280)||(13992731-13992836)
chr4 (196-312)||(5143704-5143821)
chr4 (174-280)||(5148154-5148259)
chr4 (266-312)||(54200317-54200363)
chr4 (232-312)||(25861605-25861686)
chr4 (174-278)||(31495756-31495859)
chr4 (241-312)||(5396272-5396344)
[»] scaffold0286 (1 HSPs)
scaffold0286 (174-312)||(10959-11097)
[»] chr1 (22 HSPs)
chr1 (173-311)||(4553060-4553198)
chr1 (173-312)||(11348120-11348258)
chr1 (158-308)||(192997-193147)
chr1 (174-312)||(37033698-37033836)
chr1 (174-312)||(31658858-31658995)
chr1 (174-312)||(44454779-44454916)
chr1 (173-312)||(49917968-49918106)
chr1 (173-312)||(37879520-37879658)
chr1 (232-312)||(20762348-20762429)
chr1 (225-285)||(28220665-28220725)
chr1 (225-285)||(28223860-28223920)
chr1 (173-312)||(3156486-3156624)
chr1 (163-209)||(42298592-42298638)
chr1 (174-312)||(3188970-3189108)
chr1 (174-312)||(3197787-3197925)
chr1 (174-312)||(3206605-3206743)
chr1 (174-301)||(10924843-10924969)
chr1 (196-286)||(1833163-1833252)
chr1 (241-312)||(37070211-37070283)
chr1 (228-312)||(13604191-13604276)
chr1 (267-312)||(29135762-29135807)
chr1 (178-226)||(46064562-46064610)
[»] chr2 (23 HSPs)
chr2 (173-312)||(36318420-36318560)
chr2 (174-312)||(39284516-39284654)
chr2 (196-312)||(2837255-2837370)
chr2 (174-312)||(36988486-36988624)
chr2 (164-279)||(45726416-45726530)
chr2 (174-312)||(29867499-29867637)
chr2 (174-312)||(34389294-34389432)
chr2 (165-209)||(1632369-1632413)
chr2 (232-311)||(6595406-6595486)
chr2 (233-312)||(45099432-45099512)
chr2 (218-312)||(20522666-20522761)
chr2 (226-312)||(39483320-39483407)
chr2 (250-312)||(14698600-14698662)
chr2 (219-312)||(17863856-17863950)
chr2 (219-312)||(33528183-33528277)
chr2 (219-312)||(35447512-35447605)
chr2 (250-312)||(23078062-23078125)
chr2 (255-312)||(21630389-21630446)
chr2 (196-312)||(28258715-28258831)
chr2 (220-252)||(17057725-17057757)
chr2 (220-252)||(17085708-17085740)
chr2 (241-312)||(17865621-17865693)
chr2 (196-280)||(30832986-30833069)
[»] chr6 (18 HSPs)
chr6 (162-312)||(21593056-21593205)
chr6 (241-312)||(603648-603719)
chr6 (233-312)||(9183421-9183500)
chr6 (225-312)||(22964142-22964229)
chr6 (225-312)||(23824164-23824251)
chr6 (196-312)||(3809338-3809450)
chr6 (173-314)||(17759356-17759496)
chr6 (196-312)||(21272526-21272642)
chr6 (196-312)||(10076729-10076844)
chr6 (197-311)||(33211597-33211709)
chr6 (255-312)||(24435568-24435625)
chr6 (174-258)||(33160799-33160882)
chr6 (174-280)||(22709497-22709602)
chr6 (174-280)||(5017011-5017115)
chr6 (226-312)||(31979961-31980047)
chr6 (247-312)||(26661423-26661488)
chr6 (247-312)||(26767394-26767459)
chr6 (219-280)||(31086031-31086092)
[»] chr5 (26 HSPs)
chr5 (171-312)||(32636441-32636581)
chr5 (226-312)||(42426646-42426732)
chr5 (226-312)||(42428829-42428915)
chr5 (218-312)||(5057494-5057588)
chr5 (219-311)||(37438809-37438902)
chr5 (174-312)||(30683319-30683456)
chr5 (171-272)||(28751033-28751135)
chr5 (171-312)||(16651033-16651174)
chr5 (219-279)||(213008-213068)
chr5 (236-312)||(38746451-38746527)
chr5 (218-312)||(13487868-13487960)
chr5 (223-304)||(40146717-40146798)
chr5 (174-312)||(12083693-12083831)
chr5 (174-312)||(13239372-13239509)
chr5 (228-312)||(11916540-11916625)
chr5 (173-258)||(19806046-19806130)
chr5 (149-188)||(42310463-42310502)
chr5 (266-312)||(533492-533538)
chr5 (266-312)||(535614-535660)
chr5 (220-258)||(11181412-11181450)
chr5 (255-312)||(14520673-14520731)
chr5 (266-312)||(27015025-27015071)
chr5 (196-312)||(9352872-9352988)
chr5 (174-278)||(9789663-9789766)
chr5 (173-258)||(27014954-27015038)
chr5 (174-258)||(39468976-39469059)
[»] scaffold0176 (1 HSPs)
scaffold0176 (220-312)||(17675-17767)
[»] scaffold0014 (1 HSPs)
scaffold0014 (219-312)||(80912-81005)
[»] scaffold0016 (1 HSPs)
scaffold0016 (232-312)||(114263-114343)
[»] scaffold0188 (1 HSPs)
scaffold0188 (174-280)||(17474-17579)
[»] scaffold0036 (1 HSPs)
scaffold0036 (220-279)||(86066-86124)
[»] scaffold0087 (2 HSPs)
scaffold0087 (228-312)||(36401-36486)
scaffold0087 (174-312)||(43477-43615)
[»] scaffold0006 (1 HSPs)
scaffold0006 (228-312)||(132848-132933)
[»] scaffold0002 (1 HSPs)
scaffold0002 (241-312)||(434217-434290)


Alignment Details
Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 110 - 312
Target Start/End: Original strand, 43035997 - 43036180
Alignment:
Q  110 tccacttgcttttattttatttttgttgtgtatgccttcaaaatttagtttggtgaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttc 209  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||    
T  43035997 tccacttgtttttattttatttttgttgtgtatgccttcaaaatttagtttggtgaaagtgaagaatcgtgacacg-------------------atttc 43036077  T
Q  210 gcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataagg 309  Q
    |||||||| ||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| |||||||| ||||||||| |||||||||||||||||    
T  43036078 gcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgattttggaaaaacgtgacacgattttcgacttgttgggcaagttttcaggataagg 43036177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 133 - 308
Target Start/End: Original strand, 4731237 - 4731411
Alignment:
Q  133 tgttgtgtatgccttcaaaatttagtttggtgaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgc 232  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| |||||| |    
T  4731237 tgttgtgtatgccttcaaaattgagtttagagaaagtgaagaatcgtgacacgatttgacaaccgtgtcacgatttcgcaatgtcgtgagc-tgttttac 4731335  T
Q  233 agggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataag 308  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |||  | |||||||| |||||    
T  4731336 agggtgtccaatcgtgacacgattttgggaaaacatgacatgattttcggcttgctggacacgttttcagaataag 4731411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 133 - 285
Target Start/End: Original strand, 4733404 - 4733555
Alignment:
Q  133 tgttgtgtatgccttcaaaatttagtttggtgaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgc 232  Q
    |||||||||||||||||||||| ||||||  |||||||||||||| ||||||||||||||||| ||||||||||||||||||| | ||||| |||||| |    
T  4733404 tgttgtgtatgccttcaaaattgagtttgaagaaagtgaagaatcatgacacgatttggcaactgtgtcacgatttcgcaatgtcgtgagc-tgttttcc 4733502  T
Q  233 agggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggctt 285  Q
    ||||||| ||||| ||||||| |||||||||||||||||| ||||||||||||    
T  4733503 agggtgttcaatcgtgacacgattttgggaaaacgtgacacgattttcggctt 4733555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 196 - 312
Target Start/End: Complemental strand, 42435736 - 42435620
Alignment:
Q  196 cgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag 295  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| |||||||| |||| | || |||    
T  42435736 cgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaacgtgacacgattttcgtcttgcttggcaag 42435637  T
Q  296 ttttcaggataaggttg 312  Q
    |||||||||||||||||    
T  42435636 ttttcaggataaggttg 42435620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 30142983 - 30143099
Alignment:
Q  196 cgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag 295  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| ||||||||||||| |||  |||    
T  30142983 cgtgtcacgatttcgcaatttcgtgagcatgttttgcagggtgtccaatcgtgacacgattttgggaaaatgtgacacgattttcggcttgctggacaag 30143082  T
Q  296 ttttcaggataaggttg 312  Q
    |||| ||||||||||||    
T  30143083 ttttaaggataaggttg 30143099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 15212405 - 15212543
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatg-ttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    |||| ||||||||  |||||| |||||||||||||  | | ||  |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  15212405 aatcatgacacgaagtggcaaacgtgtcacgatttt-ctaggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgaca 15212503  T
Q  273 tgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
     ||||||||||||| || | ||||||||||||||||||||    
T  15212504 cgattttcggcttgctgagcaagttttcaggataaggttg 15212543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 173 - 312
Target Start/End: Complemental strand, 4743744 - 4743604
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    |||||||||||||||| |  || | |||||| ||||||||||||| ||||||||||||| ||||||||||||| ||||||| ||||| | ||||||||||    
T  4743744 gaatcgtgacacgattagtgaagcatgtcacaatttcgcaatgccgtgagcatgttttgaagggtgtccaatcgtgacacgattttgaggaaacgtgaca 4743645  T
Q  273 tgattttcggcttg-ttgggaaagttttcaggataaggttg 312  Q
     |||||||| |||| |||| |   |||||||||||||||||    
T  4743644 cgattttcgacttgcttggcacgtttttcaggataaggttg 4743604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 27810970 - 27811055
Alignment:
Q  227 ttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||||||||||||| ||||||| ||||| ||||| |||||| ||||||||||||| |||| ||||||||||||||||||||    
T  27810970 ttttgcagggtgtccaatcgtgacacgattttgagaaaatgtgacacgattttcggcttgctgggcaagttttcaggataaggttg 27811055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 196 - 311
Target Start/End: Original strand, 40221188 - 40221302
Alignment:
Q  196 cgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag 295  Q
    ||||||||||||| |  ||||| |||||||||||||  | |||||||||| || |||| |||||||||||||||||| ||||||| |||||||||  | |    
T  40221188 cgtgtcacgattttggcatgccgtgagcatgttttgt-gagtgtccaatcgtgtcacgattttgggaaaacgtgacacgattttcagcttgttggacacg 40221286  T
Q  296 ttttcaggataaggtt 311  Q
    ||||||||||||||||    
T  40221287 ttttcaggataaggtt 40221302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 22975983 - 22976072
Alignment:
Q  222 gcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggtt 311  Q
    ||||| ||| |||||||||||||| ||||||| |||||||||||||||||| ||||||| ||||| | |  |||||||||||||||||||    
T  22975983 gcatggttttcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcagcttgcttgacaagttttcaggataaggtt 22976072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 12703187 - 12703050
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgc-aatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    |||||||||| |||||||||| ||||||||||||| || |||| |  |||  |||||| ||| |||||||||| ||||||| ||||||||||||||||||    
T  12703187 aatcgtgacatgatttggcaagcgtgtcacgattttgctaatgtcgagagt-tgtttt-cagagtgtccaatcgtgacacgattttgggaaaacgtgaca 12703090  T
Q  273 tgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
     ||||||| ||||| |  | ||| ||||||||||||||||    
T  12703089 cgattttcagcttgctaagcaagctttcaggataaggttg 12703050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 312
Target Start/End: Original strand, 11383452 - 11383545
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||| |||  ||||||||||||  ||||||| |||||||||||||||||| ||||||| ||||| |||| || |||||| ||||||||||    
T  11383452 tgagcatggtttttagggtgtccaattgtgacacgattttgggaaaacgtgacacgattttcagcttgctgggcaaattttcaagataaggttg 11383545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 1746767 - 1746629
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgc-aatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||| ||||||||| |||| |||||||| |  |||| |  |||| |||||| ||||| |||||||| ||||||| |||||||||| |||||||    
T  1746767 aatcgtgacacaatttggcaatcgtgacacgattttggtaatgtcgagagc-tgtttt-cagggcgtccaatcgtgacacgattttgggaaatcgtgaca 1746670  T
Q  273 tgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
     |||||| |||||| |||| ||| |||||||||||||||||    
T  1746669 cgatttttggcttgctgggcaagattttcaggataaggttg 1746629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 19945831 - 19945750
Alignment:
Q  232 cagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
    ||||| |||||||| ||||||| |||| ||||| ||||||| |||||| ||||||||||| ||| |||||||||||||||||    
T  19945831 cagggcgtccaatcgtgacacgattttaggaaatcgtgacacgatttttggcttgttggggaagattttcaggataaggttg 19945750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 31217933 - 31218014
Alignment:
Q  232 cagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
    ||||| |||||||  ||||||| |||||||||| ||||||| |||||| ||||||||||| ||| |||| ||||||||||||    
T  31217933 cagggcgtccaattgtgacacgattttgggaaatcgtgacacgatttttggcttgttgggcaagatttttaggataaggttg 31218014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 33351788 - 33351888
Alignment:
Q  172 agaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatg-ttttgcagggtgtccaatcatgacacggttttgggaaaacgtga 270  Q
    |||||||||||||||||| |||| |||||||||||||   |  ||  ||| |||| ||||||||||||||||||| ||||||| |||||||||||| |||    
T  33351788 agaatcgtgacacgatttagcaagcgtgtcacgattttttag-gcagtgaacatggttttgcagggtgtccaatcgtgacacgattttgggaaaacatga 33351886  T
Q  271 ca 272  Q
    ||    
T  33351887 ca 33351888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 34254820 - 34254739
Alignment:
Q  232 cagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
    ||||| ||| |||||||||||| |||||||||| ||||||| |||||| || ||| |||| ||| |||||||||||||||||    
T  34254820 cagggcgtctaatcatgacacgattttgggaaatcgtgacacgatttttggattgctgggcaagattttcaggataaggttg 34254739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 312
Target Start/End: Complemental strand, 1345895 - 1345782
Alignment:
Q  198 tgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagtt 297  Q
    ||||| ||||| ||||||||  ||||||||| |||||||||| ||||| ||||||| ||| | ||||| ||||||  |||||| ||||| | |  | |||    
T  1345895 tgtcatgattttgcaatgccgagagcatgttctgcagggtgttcaatcgtgacacgattt-gagaaaatgtgacacaattttcagcttgcttgacacgtt 1345797  T
Q  298 ttcaggataaggttg 312  Q
    |||||||||||||||    
T  1345796 ttcaggataaggttg 1345782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 4283039 - 4283085
Alignment:
Q  266 cgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||| ||||||||||||| |||| ||||||||||||||||||||    
T  4283039 cgtgacacgattttcggcttgctgggcaagttttcaggataaggttg 4283085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 312
Target Start/End: Original strand, 10014823 - 10014916
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||||| |||||| ||||||| ||||||| ||||||| || | ||||| |||||| ||| || | || | |||| |||||||||||||    
T  10014823 tgagcatgtttttcagggtttccaatcgtgacacgattttgggcaatcatgacacgatttttggcatgcttggcacgtttacaggataaggttg 10014916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 19175305 - 19175386
Alignment:
Q  232 cagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||  ||||| || |||| ||||||||||||||||||||||||||   |||| |||| | ||||||||||||||||||    
T  19175305 cagggtgctcaatcgtgtcacgattttgggaaaacgtgacatgattttcaaacttgctgggtacgttttcaggataaggttg 19175386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 42497891 - 42497971
Alignment:
Q  232 cagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag-ttttcaggataaggtt 311  Q
    ||||| |||||||| ||||||| ||||||||||  |||||| |||| | |||||| |||| ||| ||||||||||||||||    
T  42497891 cagggcgtccaatcgtgacacgattttgggaaattgtgacacgattattggcttgctgggcaagattttcaggataaggtt 42497971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 140 - 312
Target Start/End: Original strand, 44331154 - 44331326
Alignment:
Q  140 tatgccttcaaaatttagtttggtgaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgt 239  Q
    ||||||||| ||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||   |||| ||||||||| ||||||    
T  44331154 tatgccttctaaattgagtttggagaaagtgaagaatcgtgacacgctttggcaaccgtgtcacgatttcgcaatgttgtgagtatgttttgctgggtgt 44331253  T
Q  240 ccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
     ||||| ||||||| ||||||||||| |||||| |||||| |||||| |||| | ||||||||||||||||||    
T  44331254 tcaatcgtgacacgattttgggaaaaagtgacacgatttttggcttgctgggtacgttttcaggataaggttg 44331326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 164 - 312
Target Start/End: Original strand, 34490624 - 34490771
Alignment:
Q  164 gaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaa 263  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |  ||| |||||||||||||| ||||||| ||||||| |||||| ||    
T  34490624 gaaagtgaagaatcatgacacgatttggcaaccgtgtcacgatttcgcaatgtcgagag-atgttttgcagggtatccaatcgtgacacgattttggaaa 34490722  T
Q  264 aacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  34490723 aacgtgacacgattttcggcttattgggcaagttttcaggataaggttg 34490771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 49200218 - 49200080
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||  ||  ||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| | ||||| ||||||||||     
T  49200218 aatcgtgacacgattttacaggcgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgatgttggggaaacgtgacac 49200119  T
Q  274 gattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||||||| |||| | ||||||||||||||||||    
T  49200118 gattttcggcttgctgggcatgttttcaggataaggttg 49200080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 164 - 312
Target Start/End: Complemental strand, 31340819 - 31340671
Alignment:
Q  164 gaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaa 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||  | | ||  |||||||| ||| |||||||||||||| ||||| | |||||||||    
T  31340819 gaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttt-ctaggcagtgagcatggttttcagggtgtccaatcgtgacatgattttgggaa 31340721  T
Q  264 aa-cgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    || | ||||| |||||||||||||||||| ||||||||||||||||||||    
T  31340720 aaacatgacacgattttcggcttgttgggcaagttttcaggataaggttg 31340671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 133 - 307
Target Start/End: Complemental strand, 44332026 - 44331863
Alignment:
Q  133 tgttgtgtatgccttcaaaatttagtttggtgaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgc 232  Q
    |||||| ||||||||||||||| ||||||| ||||||||||||||||| |||           |||||||||||||||||||||| |||| |||||||||    
T  44332026 tgttgtttatgccttcaaaattgagtttggagaaagtgaagaatcgtgtcac-----------cgtgtcacgatttcgcaatgccgtgagtatgttttgc 44331938  T
Q  233 agggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataa 307  Q
    ||||||||||||| ||||||| |||||| ||||||||||| |||||| |||||  |||| | ||||||| |||||    
T  44331937 agggtgtccaatcgtgacacgattttggaaaaacgtgacacgatttttggcttcctgggtacgttttcaagataa 44331863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 164 - 312
Target Start/End: Original strand, 46173126 - 46173272
Alignment:
Q  164 gaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaa 263  Q
    |||||||||||||||||||| || ||||||| | |||||||||||| ||| ||  |||||||| |||||||||||||||||| ||||||| |||||||||    
T  46173126 gaaagtgaagaatcgtgacatgaattggcaaacatgtcacgatttc-caaggcagtgagcatggtttgcagggtgtccaatcgtgacacgattttgggaa 46173224  T
Q  264 aacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||| ||||| || || |||||||||||| | ||||||||||||||||||    
T  46173225 aacatgacacga-ttccggcttgttgggcacgttttcaggataaggttg 46173272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 174 - 308
Target Start/End: Complemental strand, 5237005 - 5236872
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||   || ||||||||||||| || |||||  ||||||||||| | | |||||||||| ||||||  ||||||||||||||||||     
T  5237005 aatcgtgacacgatttcataagcgtgtcacgatttggctatgccgagagcatgtttt-ctgagtgtccaatcgtgacacaattttgggaaaacgtgacac 5236907  T
Q  274 gattttcggcttgttgggaaagttttcaggataag 308  Q
    ||||||||||||| |||||||||||||||||||||    
T  5236906 gattttcggcttgctgggaaagttttcaggataag 5236872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 172 - 312
Target Start/End: Original strand, 29812680 - 29812820
Alignment:
Q  172 agaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatg-ttttgcagggtgtccaatcatgacacggttttgggaaaacgtga 270  Q
    |||||||||||||||||| ||||  ||||||||||||  | | ||  |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||    
T  29812680 agaatcgtgacacgatttagcaagtgtgtcacgatttt-ctaggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtga 29812778  T
Q  271 catgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    || |||||| | |||| |||| ||||||||||||||||||||    
T  29812779 cacgatttttgtcttgctgggcaagttttcaggataaggttg 29812820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 6096322 - 6096229
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||| |||||||||||||||||  ||||||| |||||||||||||||||| |||||||||||| ||||  || |||||||||||||||||    
T  6096322 tgagcatggtttgcagggtgtccaattgtgacacgattttgggaaaacgtgacacgattttcggcttattggacaaattttcaggataaggttg 6096229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 7764071 - 7764209
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacga-tttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||||||||||| |||||||||| ||| | |||| |  |||| |||||| ||||| |||||||| ||||||| ||||||||||||||||||    
T  7764071 aatcgtgacacgatttggcaagcgtgtcacgagtttggtaatggcgagagc-tgtttt-cagggcgtccaatcgtgacacgattttgggaaaacgtgaca 7764168  T
Q  273 tgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
     |||||| ||||||||||| ||| |||| ||||||||||||    
T  7764169 cgatttttggcttgttgggcaagatttttaggataaggttg 7764209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 4569411 - 4569490
Alignment:
Q  233 agggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||||||| ||||| | |||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||    
T  4569411 agggtgtccaatcgtgacatgattttgggaaaacgtgacacgattttcggcttgctgggcaagttttcaggataaggttg 4569490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 23410879 - 23410784
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtg 269  Q
    ||||||||||| |||||  || |||||||||||||||||||| |  |||||||||||||||||||||||||| ||||||  |||||| ||||||||    
T  23410879 aatcgtgacacaatttgtgaagcgtgtcacgatttcgcaatgtcgagagcatgttttgcagggtgtccaatcgtgacacaattttggaaaaacgtg 23410784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 51398497 - 51398583
Alignment:
Q  226 gttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||||||||||||  ||||||| ||||||||||||||||||  |||||||| |||||||| ||||||| |||||| |||||    
T  51398497 gttttgcagggtgtccaattgtgacacgattttgggaaaacgtgacacaattttcggtttgttgggcaagtttttaggatatggttg 51398583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 55302686 - 55302594
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||  ||| |||||||| ||||| ||||||| ||| |||||||||||| | ||||||||||||| |||| ||||||||||||||||||||    
T  55302686 tgagcattgttttcagggtgttcaatcgtgacacgattt-gggaaaacgtgatacgattttcggcttgctgggcaagttttcaggataaggttg 55302594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 7761884 - 7762021
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgc-aatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||||||||||| |||||||| |||| |  |||  || |||| |||||| ||||| |||||||| ||||||| |||||||||| |||||||    
T  7761884 aatcgtgacacgatttggcaagcgtgtcactattttggtaatatcaagagc-tgtttt-cagggcgtccaatcgtgacacgattttgggaaa-cgtgaca 7761980  T
Q  273 tgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
     |||||| |||||| |||| ||| |||||||||||||||||    
T  7761981 cgatttttggcttgctgggcaagattttcaggataaggttg 7762021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 312
Target Start/End: Complemental strand, 43402510 - 43402419
Alignment:
Q  220 gagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||||| | || ||| ||||| ||||||| ||||||  |||||||||| ||||||||||||| |||| ||||||||||||||||||||    
T  43402510 gagcatgtttt-ctggatgttcaatcgtgacacgattttggagaaacgtgacacgattttcggcttgctgggcaagttttcaggataaggttg 43402419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 27038579 - 27038485
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||| |||||||||||  |||||||| |||| ||||||||||| |||||| |||||||   ||||||||| | ||||||||||||||||||    
T  27038579 tgagcatggtttgcagggtgctcaatcatgtcacgattttgggaaaatgtgacacgattttcaaacttgttgggtatgttttcaggataaggttg 27038485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 40912819 - 40912873
Alignment:
Q  255 ttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataagg 309  Q
    |||||||||||||||||| |||||||||||||||||| |||||||| ||||||||    
T  40912819 ttttgggaaaacgtgacacgattttcggcttgttgggcaagttttctggataagg 40912873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 43404453 - 43404364
Alignment:
Q  220 gagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggt 310  Q
    ||||||||||| | || ||| ||||| ||||||| ||||||| |||||||||| ||||||||||||| || | ||||||||||||||||||    
T  43404453 gagcatgtttt-ctggatgttcaatcgtgacacgattttggggaaacgtgacacgattttcggcttgctgagcaagttttcaggataaggt 43404364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 30235614 - 30235655
Alignment:
Q  168 gtgaagaatcgtgacacgatttggcaaccgtgtcacgatttc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30235614 gtgaagaatcgtgacacgatttggcaaccgtgtcacgatttc 30235655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 45094840 - 45094921
Alignment:
Q  232 cagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
    ||||| |||||||| ||||||  |||||||||| ||||||| |||||| ||||||||||| ||| |||||||||||||||||    
T  45094840 cagggcgtccaatcgtgacacaattttgggaaatcgtgacacgatttttggcttgttgggcaagattttcaggataaggttg 45094921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 312
Target Start/End: Original strand, 36018262 - 36018401
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttg-cagggtgtccaatcatgacacggttttgggaaaacgtgac 271  Q
    ||||||||||||||||  |||| |||||||||||||  | | ||  ||||||| ||||  | |||||  ||||| ||||||| |||||||||||||||||    
T  36018262 gaatcgtgacacgattacgcaagcgtgtcacgatttt-ctaggcagtgagcatattttttctgggtgctcaatcgtgacacgattttgggaaaacgtgac 36018360  T
Q  272 atgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |  |||||||||||| |||| | ||||| ||||||||||||    
T  36018361 acaattttcggcttgctgggcacgtttttaggataaggttg 36018401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 5258630 - 5258555
Alignment:
Q  238 gtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
    |||||||| ||||||| |||||||||| ||||||| |||||| |||||| |||| ||| |||||||||||||||||    
T  5258630 gtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgctgggcaagattttcaggataaggttg 5258555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 24694713 - 24694762
Alignment:
Q  196 cgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatc 245  Q
    ||||||||||||| |||||| | |||||||||||||||||||||||||||    
T  24694713 cgtgtcacgattttgcaatgtcgtgagcatgttttgcagggtgtccaatc 24694762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 312
Target Start/End: Original strand, 29810485 - 29810625
Alignment:
Q  172 agaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatg-ttttgcagggtgtccaatcatgacacggttttgggaaaacgtga 270  Q
    |||||||||||| ||||| |||| |||||||| ||||  | | ||  |||||||| ||||||||||||||||||| ||||||| |||| | |||||||      
T  29810485 agaatcgtgacatgatttagcaagcgtgtcacaatttt-ctaggcattgagcatggttttgcagggtgtccaatcgtgacacgattttagaaaaacgtag 29810583  T
Q  271 catgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||  ||||| |||||| |||  || |||||||||||||||||    
T  29810584 cacaatttttggcttgctggacaaattttcaggataaggttg 29810625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 47303756 - 47303801
Alignment:
Q  163 tgaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattt 208  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||    
T  47303756 tgaatgtgaagaatcgtgacacgatttggcaaccgtgacacgattt 47303801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 23392365 - 23392301
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggt 237  Q
    ||||||||||||||||||  || |||||||||||||| ||||| |  ||||||||||||||||||    
T  23392365 gaatcgtgacacgatttgtgaagcgtgtcacgatttcacaatgtcgagagcatgttttgcagggt 23392301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 35926072 - 35925934
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||    | |||||||||||||| ||  ||  |||||||| |||||||||||  ||||| || ||||  |||| ||||||||||||     
T  35926072 aatcgtgacacgatttcatcaacgtgtcacgatttcccag-gcagtgagcatggtttgcagggtgctcaatcgtgtcacgagtttgagaaaacgtgacac 35925974  T
Q  274 gattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||   ||||||||| | ||||||||||||||||||    
T  35925973 gattttcaaacttgttgggtacgttttcaggataaggttg 35925934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 37726256 - 37726118
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||| || |  | |||| |||||||| |  ||||| ||||| || ||||||||||||| |||| ||||||| ||||| | || |||||||     
T  37726256 aatcgtgacacgaatttgatatcgtgacacgattttgtgatgccgtgagc-tggtttgcagggtgtcaaatcgtgacacgattttgtggaatcgtgacac 37726158  T
Q  274 gattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||   ||||||||  ||||||||||||||||||||    
T  37726157 gattttcaaacttgttggttaagttttcaggataaggttg 37726118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 312
Target Start/End: Original strand, 8370038 - 8370132
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||| |||||||||||  ||||| || |||| |||||||||||||||||| |||||||    ||| |||||| ||||| ||||||||||||    
T  8370038 tgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttcaaaattgctgggaacgtttttaggataaggttg 8370132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 16264886 - 16264792
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||| |||||||||||  ||||| || |||| |||||||||||||||||| |||||||   || | |||| | ||||||||||||||||||    
T  16264886 tgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttcaaactagctgggtacgttttcaggataaggttg 16264792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 280
Target Start/End: Original strand, 40735048 - 40735152
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||    | |||||||||||||| ||| ||  |||||||| |||||||||||  ||||| || |||| ||||||||||||||||||     
T  40735048 aatcgtgacacgatttcatcaacgtgtcacgatttc-caa-gcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacac 40735145  T
Q  274 gattttc 280  Q
    |||||||    
T  40735146 gattttc 40735152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 40734160 - 40734221
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc 280  Q
    |||||||| |||||||||||  ||||| || |||| |||||||||||||||||| |||||||    
T  40734160 tgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 40734221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 54593186 - 54593243
Alignment:
Q  255 ttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||||||||||| |||||||  |||| |||| | ||||||||||||||||||    
T  54593186 ttttgggaaaacgtgacacgattttcaacttgctgggcacgttttcaggataaggttg 54593243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 40592353 - 40592424
Alignment:
Q  241 caatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||| || |||| |||||||||||||||||| |||||||  |||| |||  | ||||||||||||||||||    
T  40592353 caatcgtgtcacgattttgggaaaacgtgacacgattttcaacttgctggacacgttttcaggataaggttg 40592424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 9636620 - 9636539
Alignment:
Q  232 cagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
    ||||| |||||||| ||||| | |||||||||| | ||||| |||||| |||||| |||  ||| |||||||||||||||||    
T  9636620 cagggcgtccaatcgtgacatgattttgggaaatcatgacacgatttttggcttgatggacaagattttcaggataaggttg 9636539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 27027244 - 27027183
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc 280  Q
    |||||||| ||||||| |||  ||||| || |||| |||||||||||||||||| |||||||    
T  27027244 tgagcatggtttgcagagtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 27027183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 30709344 - 30709397
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    |||||||| |||||||||||| ||||| || |||| ||||| ||||||||||||    
T  30709344 tgagcatggtttgcagggtgttcaatcgtgtcacgattttgagaaaacgtgaca 30709397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 47923451 - 47923512
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc 280  Q
    |||||||| |||||||||||  ||||| || |||  |||||||||||||||||| |||||||    
T  47923451 tgagcatggtttgcagggtgctcaatcgtgtcacatttttgggaaaacgtgacacgattttc 47923512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 33386180 - 33386318
Alignment:
Q  174 aatcgtgacacga-tttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||| ||||||| | ||| |||||||| |  ||||| ||||| || ||||||||||| | |||| ||||||| ||||| | || |||||||    
T  33386180 aatcgtgacacgaatttggcatc-gtgacacgattttgtgatgccgtgagc-tggtttgcagggtgccaaatcgtgacacgattttgtggaatcgtgaca 33386277  T
Q  273 tgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
     |||||||   |||| |||  ||||||||||||||||||||    
T  33386278 cgattttcaaacttgctggttaagttttcaggataaggttg 33386318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 175 - 312
Target Start/End: Complemental strand, 20963 - 20826
Alignment:
Q  175 atcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatg 274  Q
    ||||||||||||||||  || ||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  20963 atcgtgacacgatttgtgaagcgtgtcacgattttgcaatgtcgtgagcatgttttgcagggtgtccaatcatgacacgattttgggaaaacgtgacacg 20864  T
Q  275 attttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||||||||||||||||||| || |||||||||    
T  20863 attttcggcttgttgggaaagtttttagaataaggttg 20826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 130 - 312
Target Start/End: Original strand, 48489007 - 48489187
Alignment:
Q  130 ttttgttgtgtatgccttcaaaatttagtttggtgaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttt 229  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| |||||||||||||||| |||||||||||| | ||||| |||||    
T  48489007 ttttgttgtgtatgccttcaaaattgagtttggagaaagtgaagaa-cgtgacacgttttggcaaccgtgtcatgatttcgcaatgtcgtgagc-tgttt 48489104  T
Q  230 tgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||| ||| | ||||||| ||| |||||||||||||| | |||| |||||| |||| | | || |||||||||||||    
T  48489105 tgcagggtgttcaaccgtgacacgatttagggaaaacgtgacacggtttttggcttgctgggcatgcttccaggataaggttg 48489187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 48491178 - 48491302
Alignment:
Q  133 tgttgtgtatgccttcaaaatttagtttggtgaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgc 232  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||||    
T  48491178 tgttgtgtatgccttcaaaattgagtttggagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgaattcgcaatgtcgtgagc-tgttttgc 48491276  T
Q  233 agggtgtccaatcatgacacggtttt 258  Q
    ||||||||||||| ||||||| ||||    
T  48491277 agggtgtccaatcgtgacacgatttt 48491302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 172 - 312
Target Start/End: Complemental strand, 47674494 - 47674354
Alignment:
Q  172 agaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatg-ttttgcagggtgtccaatcatgacacggttttgggaaaacgtga 270  Q
    |||||||||||||||||| |||| | |||||||||||  ||  ||  |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||    
T  47674494 agaatcgtgacacgatttagcaagcatgtcacgattttccag-gcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtga 47674396  T
Q  271 catgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    || ||||||||||||| |||| ||||||||||||||||||||    
T  47674395 cacgattttcggcttgctgggcaagttttcaggataaggttg 47674354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 172 - 312
Target Start/End: Complemental strand, 47676687 - 47676547
Alignment:
Q  172 agaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatg-ttttgcagggtgtccaatcatgacacggttttgggaaaacgtga 270  Q
    |||||| ||||| ||||| |||| |||||||||||||  | | ||  |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||    
T  47676687 agaatcatgacatgatttagcaagcgtgtcacgatttt-ctaggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtga 47676589  T
Q  271 catgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    || ||||||||||||| |||| ||||||||||||||||||||    
T  47676588 cacgattttcggcttgctgggcaagttttcaggataaggttg 47676547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 172 - 312
Target Start/End: Original strand, 43863878 - 43864018
Alignment:
Q  172 agaatcgtgacacgatttggcaaccgtgtcacgatttcgcaa-tgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtga 270  Q
    |||||||||||||||||||| || |||||||| |||| |  | ||||  ||||||||||| | | |||||||||| ||||||| ||||||||||||||||    
T  43863878 agaatcgtgacacgatttggaaagcgtgtcaccattttggtagtgcccagagcatgttttcc-gagtgtccaatcgtgacacgattttgggaaaacgtga 43863976  T
Q  271 catgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    || ||||||||| ||||| |||||||||||||||||||||||    
T  43863977 cacgattttcggtttgttaggaaagttttcaggataaggttg 43864018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 27347543 - 27347680
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagca-tgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    |||||||||||||||||  || |||||||||||||  | | ||  |||||| |||||||||||||| |||||| ||||||| |||||||||||| |||||    
T  27347543 aatcgtgacacgatttgctaagcgtgtcacgatttt-ctaggcagtgagcactgttttgcagggtgcccaatcgtgacacgattttgggaaaac-tgaca 27347640  T
Q  273 tgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  27347641 tgattttcggcttgctgggcaagttttcaggataaggttg 27347680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 219 - 312
Target Start/End: Original strand, 4585825 - 4585918
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||||||||||||||||||||| ||||||  |||||||||||||||||| |||||| ||||||||||| |||||||||  |||||||||    
T  4585825 tgagcatgttttgcagggtgtccaatcgtgacactattttgggaaaacgtgacaagatttttggcttgttgggtaagttttcaatataaggttg 4585918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 312
Target Start/End: Complemental strand, 6360679 - 6360541
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    |||| |||||||||||||  || |||||| | |||| |||||| |  |||| |||||||||||||| |||||  ||||||| ||||||| ||||||||||    
T  6360679 gaatagtgacacgatttgtgaagcgtgtcgcaattttgcaatgtcgagagc-tgttttgcagggtgcccaattgtgacacgattttggggaaacgtgaca 6360581  T
Q  273 tgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
     |||||||||||||||||| ||||||||||||||| ||||    
T  6360580 cgattttcggcttgttgggcaagttttcaggataatgttg 6360541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 258
Target Start/End: Complemental strand, 34311378 - 34311285
Alignment:
Q  164 gaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggtttt 258  Q
    ||||||||||||||||||||||||||||||| |||||||||||||  | | ||  |||||||| |||||||||||||||||||||||||| ||||    
T  34311378 gaaagtgaagaatcgtgacacgatttggcaaacgtgtcacgattt-tctaggcagtgagcatggtttgcagggtgtccaatcatgacacgatttt 34311285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 1113296 - 1113380
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggtttt 258  Q
    |||||||||||||||| |||| |||||||||||||||||||||||  ||||| ||||||| ||||||||||| ||||||| ||||    
T  1113296 aatcgtgacacgatttagcaagcgtgtcacgatttcgcaatgccaatagcatattttgcatggtgtccaatcgtgacacgatttt 1113380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 23554659 - 23554797
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgc-aatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    |||||||| || ||||||||| ||||||||||||| |  |||| |  |||| |||||| |||||||||||||| ||||||| ||||||||||||||||||    
T  23554659 aatcgtgatacaatttggcaagcgtgtcacgattttggtaatgtcgagagc-tgtttt-cagggtgtccaatcgtgacacgattttgggaaaacgtgaca 23554756  T
Q  273 tgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
     |||||||| |||| |||| ||| |||||||||||||||||    
T  23554757 cgattttcgacttgctgggcaagtttttcaggataaggttg 23554797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 18126316 - 18126401
Alignment:
Q  226 gttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||||||||||||| || |||| |||||| ||||||||| | |||||||||||||||||| ||||||||||||||| ||||    
T  18126316 gttttgcagggtgtccaatcgtg-cacgattttggaaaaacgtgatacgattttcggcttgttgggcaagttttcaggataatgttg 18126401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 219 - 312
Target Start/End: Original strand, 2389738 - 2389831
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||| |||  ||||||||||||| ||||||| ||||| ||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||    
T  2389738 tgagcatggtttttagggtgtccaatcgtgacacgattttgagaaaatgtgacacgattttcagcttgctgggaacgttttcaggataaggttg 2389831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 286
Target Start/End: Complemental strand, 48600045 - 48599933
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||||||||  || ||||||||||||| |||||| |  |||| ||||||||||||||  ||||| ||||||| || |||| ||||||||||    
T  48600045 gaatcgtgacacgatttgtgaagcgtgtcacgattttgcaatgtcgagagc-tgttttgcagggtgcacaatcgtgacacgattatggggaaacgtgaca 48599947  T
Q  273 tgattttcggcttg 286  Q
     |||||||||||||    
T  48599946 cgattttcggcttg 48599933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 173 - 312
Target Start/End: Original strand, 29608153 - 29608292
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggtttt-gggaaaacgtgac 271  Q
    ||||||||| ||||||||  ||  |||||||||||| |||||| |  |||| | ||||||||||||||||||| ||||||| |||| ||| ||| ||||     
T  29608153 gaatcgtgatacgatttgtgaagtgtgtcacgattttgcaatgtcgagagc-tattttgcagggtgtccaatcgtgacacgatttttggggaaaagtgat 29608251  T
Q  272 atgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |  ||||||| ||||||||| ||||||||||||||||||||    
T  29608252 acaattttcgacttgttgggcaagttttcaggataaggttg 29608292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 312
Target Start/End: Complemental strand, 14070383 - 14070244
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||||||| |  | |||| ||||||||  ||| ||  |||||||| ||| |||||||| ||||| ||||||| ||||||||||||||||||    
T  14070383 gaatcgtgacacgattttggcatcgtggcacgatttt-caaggcagtgagcatggttttcagggtgttcaatcgtgacacgattttgggaaaacgtgaca 14070285  T
Q  273 tgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
     |||||||| |||| | || ||| |||||| ||||||||||    
T  14070284 cgattttcgacttgctaggcaagtttttcaagataaggttg 14070244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 312
Target Start/End: Complemental strand, 14380411 - 14380272
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||||||| |  | |||| ||||||||  ||| ||  |||||||| ||| |||||||| ||||| ||||||| ||||||||||||||||||    
T  14380411 gaatcgtgacacgattttggcatcgtggcacgatttt-caaggcagtgagcatggttttcagggtgttcaatcgtgacacgattttgggaaaacgtgaca 14380313  T
Q  273 tgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
     |||||||| |||| | || ||| |||||| ||||||||||    
T  14380312 cgattttcgacttgctaggcaagtttttcaagataaggttg 14380272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 4178451 - 4178532
Alignment:
Q  232 cagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
    ||||| |||||||| ||||||| |||||||||| ||||||| |||||| |||||||| || ||| |||||||||||||||||    
T  4178451 cagggcgtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgttaggcaagattttcaggataaggttg 4178532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 32358558 - 32358465
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||| ||| |||||| ||||||| ||| ||| ||||||||||||||||||  |||||| ||||| |||| | ||||||||||||| ||||    
T  32358558 tgagcatggttttcagggtatccaatcgtgatacgattttgggaaaacgtgacacaattttcagcttgctgggcacgttttcaggataaagttg 32358465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 19495590 - 19495728
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||||||| | ||||||  ||| | |||| |  |||| |||||| |||||||||||||| ||||||  ||||||||||||||| ||     
T  19495590 aatcgtgacacgatttggcaagcatgtcacattttggtaatgtcgagagc-tgtttt-cagggtgtccaatcgtgacacaattttgggaaaacgtgccac 19495687  T
Q  274 ga-ttttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
    || |||| |||||| |||| ||| |||||||||||||||||    
T  19495688 gattttttggcttgctgggcaagattttcaggataaggttg 19495728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 4539049 - 4538962
Alignment:
Q  225 tgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||| |||||| | |||| ||||||| |||||||||||||||||| ||||||||| ||| |  | |||||||||||| |||||||    
T  4539049 tgttttgaagggtgcctaatcgtgacacgattttgggaaaacgtgacacgattttcggtttgctaagcaagttttcaggacaaggttg 4538962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 2647288 - 2647350
Alignment:
Q  250 cacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||| ||||||||||||||||||||||||||  |||| |||| | ||||||||||||||||||    
T  2647288 cacgattttgggaaaacgtgacatgattttcaacttgctgggcacgttttcaggataaggttg 2647350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 26416933 - 26417070
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||   || ||||||||||||| |  |||||  ||||||||||| | | |||||||||  ||||||| ||||||| ||| ||||||     
T  26416933 aatcgtgacacgatttcataagcgtgtcacgatttggttatgccgagagcatgtttt-ctgagtgtccaattgtgacacgattttggggaaatgtgacac 26417031  T
Q  274 gattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||  | |||||||  ||||||||||| ||||||||    
T  26417032 gatttttagtttgttggacaagttttcagggtaaggttg 26417070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 4796235 - 4796316
Alignment:
Q  225 tgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggata 306  Q
    ||||||||||||||  ||||| ||||||| |||||| ||||||||||| |||||||  |||| |||| | ||||||||||||    
T  4796235 tgttttgcagggtgctcaatcgtgacacgattttggaaaaacgtgacacgattttcaacttgatgggcacgttttcaggata 4796316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 21983824 - 21983686
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||    | |||| |||||||| |||||| | ||||| || ||||||||||| ||||||  | || | ||||| ||||||||||||     
T  21983824 aatcgtgacacgatttcatcatcgtgacacgattttgcaatgtcgtgagc-tggtttgcagggtgaccaatcgcggcatgattttgtgaaaacgtgacac 21983726  T
Q  274 gattttcgg-cttgttgggaaagttttcaggataaggttg 312  Q
    |||||||   ||||||||| | ||||||||||||||||||    
T  21983725 gattttcaaacttgttgggtacgttttcaggataaggttg 21983686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 31733410 - 31733361
Alignment:
Q  263 aaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||||  |||||||||||| |||| ||||||||||||||||||||    
T  31733410 aaacgtgacacaattttcggcttgctgggcaagttttcaggataaggttg 31733361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 280
Target Start/End: Complemental strand, 25767481 - 25767398
Alignment:
Q  196 cgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc 280  Q
    |||| ||||||||||  ||||| ||||| || ||||||||||| | |||| ||||||| |||||||||| ||||||| |||||||    
T  25767481 cgtgacacgatttcgtgatgccgtgagc-tggtttgcagggtgccaaatcgtgacacgattttgggaaatcgtgacacgattttc 25767398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 312
Target Start/End: Complemental strand, 2479913 - 2479779
Alignment:
Q  178 gtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgatt 277  Q
    |||||||||||| |  | |||| ||||||||   |||||| ||||| || ||||||||||||| |||| || |||| ||||| |||| ||| ||| ||||    
T  2479913 gtgacacgattttggcatcgtgacacgattttctaatgccgtgagc-tggtttgcagggtgtcaaatcgtgtcacgattttgtgaaatcgttacacgatt 2479815  T
Q  278 ttcgg-cttgttgggaaagttttcaggataaggttg 312  Q
    |||   ||||||||  ||||||||||||||||||||    
T  2479814 ttcaaacttgttggttaagttttcaggataaggttg 2479779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 49092229 - 49092134
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcg-gcttgttgggaaag-ttttcaggataaggttg 312  Q
    |||||||| |||||||||||  ||||| || |||| ||||||||||| |||||| ||||||||  |||| |||| | | |||||||||||||||||    
T  49092229 tgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaatgtgacacgattttcgaacttgctgggtacgtttttcaggataaggttg 49092134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 2761830 - 2761746
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggtttt 258  Q
    |||||||||| |||||||  || | ||||||||||| |||||| |  |||| |||||||||||||| |||||| ||||||| ||||    
T  2761830 gaatcgtgacccgatttgtgaagcatgtcacgattttgcaatgtcgagagc-tgttttgcagggtgcccaatcgtgacacgatttt 2761746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 158 - 312
Target Start/End: Original strand, 54882425 - 54882579
Alignment:
Q  158 tttggtgaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttt 257  Q
    ||||| |||||||||||| |||||||||||||||||| | |||||||||||   || ||  |||||||| |||||||||||||||||| ||||||| |||    
T  54882425 tttggagaaagtgaagaaacgtgacacgatttggcaatcatgtcacgatttttgaaggcagtgagcatggtttgcagggtgtccaatcgtgacacgattt 54882524  T
Q  258 tgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||||||||| |||||||||||||||||  | ||||||||||||||||||    
T  54882525 tgggaaaacgtgacacgattttcggcttgttggacacgttttcaggataaggttg 54882579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 6655357 - 6655495
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||   |  ||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||| ||| ||||||     
T  6655357 aatcgtgacacgatttcataggcgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaatgtgacac 6655456  T
Q  274 gattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||| ||| |||| ||||||||||||||||||||    
T  6655457 gattttcggtttgctgggcaagttttcaggataaggttg 6655495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 164 - 312
Target Start/End: Original strand, 26363657 - 26363804
Alignment:
Q  164 gaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaa 263  Q
    ||||||||||||||||||||||||||||||||| |||||||||||   |  ||  ||| |||  |||  ||||||||||||| ||||||| |||||||||    
T  26363657 gaaagtgaagaatcgtgacacgatttggcaaccatgtcacgattttttag-gcagtgaacattgtttttagggtgtccaatcgtgacacgattttgggaa 26363755  T
Q  264 aacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||| ||||||||||||| || | ||||||||||||||||||||    
T  26363756 aacgtgacacgattttcggcttgctgagcaagttttcaggataaggttg 26363804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 173 - 308
Target Start/End: Original strand, 5429298 - 5429433
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||| ||||||||||||| || ||||||||||||| ||||||    ||||||||||||||||||||| |||| ||||||| |||||||||||||||| |    
T  5429298 gaatcatgacacgatttggtaagcgtgtcacgattttgcaatgttgagagcatgttttgcagggtgtctaatcgtgacacgattttgggaaaacgtgata 5429397  T
Q  273 tgattttcggcttgttgggaaagttttcaggataag 308  Q
     ||||||| |||||||||  ||||||||||| ||||    
T  5429398 cgattttcagcttgttggacaagttttcaggttaag 5429433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 173 - 312
Target Start/End: Complemental strand, 26176173 - 26176035
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    |||||||||||| |||||  || ||||||||||||| |||||| |  |||| |||||||||||||| |||| | ||||||  ||||||||||||||||||    
T  26176173 gaatcgtgacacaatttgtgaagcgtgtcacgattttgcaatgtcgagagc-tgttttgcagggtgcccaaccgtgacacaattttgggaaaacgtgaca 26176075  T
Q  273 tgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
     ||||||||||||| |||| ||||||||||||||||||||    
T  26176074 cgattttcggcttgatgggcaagttttcaggataaggttg 26176035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 52095909 - 52095771
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcg-caatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||||||||||| ||||||| ||||| | ||||| || |||  |||||| |||||||||||||| ||||||| ||||||||||||||||||    
T  52095909 aatcgtgacacgatttggcaagcgtgtcatgattttggcaatgtcaagagt-tgtttt-cagggtgtccaatcgtgacacgattttgggaaaacgtgaca 52095812  T
Q  273 tgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
     |||||| |||||| |||| ||| |||||||||||||||||    
T  52095811 cgatttttggcttgctgggcaagattttcaggataaggttg 52095771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 312
Target Start/End: Original strand, 2209121 - 2209259
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    |||||||||||||||||   || ||||||||||||| |||||| |  |||| |||||||||| ||| |||||| ||||||| ||||||| ||||||||||    
T  2209121 gaatcgtgacacgatttttgaagcgtgtcacgattttgcaatgtcgagagc-tgttttgcagagtgcccaatcgtgacacgattttggggaaacgtgaca 2209219  T
Q  273 tgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
     ||||||||| ||| | || ||||||||||||||||||||    
T  2209220 cgattttcggtttgctaggcaagttttcaggataaggttg 2209259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 312
Target Start/End: Original strand, 37740245 - 37740383
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    |||||||||||||||||   || ||||||||||||| |||| | |  || | ||||||| |||||| |||||| | ||||| ||||||||||||||||||    
T  37740245 gaatcgtgacacgatttctgaagcgtgtcacgattttgcaacgtcgagaac-tgttttgtagggtgcccaatcgtaacacgattttgggaaaacgtgaca 37740343  T
Q  273 tgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||||||||  ||| ||||||||||||||||||||    
T  37740344 tgattttcggcttgcagggcaagttttcaggataaggttg 37740383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 312
Target Start/End: Complemental strand, 50674609 - 50674475
Alignment:
Q  177 cgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgat 276  Q
    |||||||||||||||  | ||||||||||||| |  ||||| |||||||||||||  | |||||||||| ||  ||| ||||||||||||||||||||||    
T  50674609 cgtgacacgatttgggtaacgtgtcacgattttggcatgccgtgagcatgttttgt-gagtgtccaatcgtgttacgattttgggaaaacgtgacatgat 50674511  T
Q  277 tttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||| ||||| |||| | ||||||||||||||||||    
T  50674510 tttcagcttgctgggcacgttttcaggataaggttg 50674475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 171 - 312
Target Start/End: Complemental strand, 12745967 - 12745827
Alignment:
Q  171 aagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtga 270  Q
    ||||||||||||||||||| |||| |||| ||||||||  | | ||  ||||| ||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  12745967 aagaatcgtgacacgatttagcaagcgtgacacgatttt-ctaggcagtgagc-tgtttggcagggtgtccaatcgtgacatgattttgggaaaacgtga 12745870  T
Q  271 catgattttcggcttgttgggaaagtttt-caggataaggttg 312  Q
    || ||||||||||||| |||| ||||||| |||||||||||||    
T  12745869 cacgattttcggcttgctgggcaagttttccaggataaggttg 12745827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 223 - 312
Target Start/End: Complemental strand, 9927961 - 9927872
Alignment:
Q  223 catgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||| |||||| ||||||||||||| |||  ||||||||||||||||||||    
T  9927961 catgttttgcagggtgttcaatcgtgacacgattttgggaaaatgtgacacgattttcggcttgctggacaagttttcaggataaggttg 9927872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 312
Target Start/End: Complemental strand, 46570289 - 46570155
Alignment:
Q  177 cgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgat 276  Q
    ||||||||||||||  || ||||||||||||| | |||| |  |||| |||| ||||||||| |||||| ||||| | ||||||||||||||||||  ||    
T  46570289 cgtgacacgatttgtgaagcgtgtcacgattttgaaatgtcgagagc-tgttctgcagggtgcccaatcgtgacaagattttgggaaaacgtgacacaat 46570191  T
Q  277 tttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||| |||| || |||||||||||||||||    
T  46570190 tttcggcttgctgggcaaattttcaggataaggttg 46570155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 312
Target Start/End: Complemental strand, 12740089 - 12739949
Alignment:
Q  171 aagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtga 270  Q
    ||||||||||||||||||| |||| |||||||||||||  | | ||  ||||| ||||||||||||||||||| |  |||||| |||||||||||||| |    
T  12740089 aagaatcgtgacacgatttagcaaacgtgtcacgatttt-ctaggcactgagc-tgttttgcagggtgtccaaccgcgacacgattttgggaaaacgtaa 12739992  T
Q  271 catgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
    ||  ||||| |||||| |||| ||| |||||||||||||||||    
T  12739991 cacaatttttggcttgctgggcaagtttttcaggataaggttg 12739949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 312
Target Start/End: Complemental strand, 12748295 - 12748155
Alignment:
Q  171 aagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtga 270  Q
    ||||||||||||||||||| |||| |||||||||||||  | | ||  ||||| ||||||||||||||||||| |  |||||| |||||||||||||| |    
T  12748295 aagaatcgtgacacgatttagcaaacgtgtcacgatttt-ctaggcactgagc-tgttttgcagggtgtccaaccgcgacacgattttgggaaaacgtaa 12748198  T
Q  271 catgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
    ||  ||||| |||||| |||| ||| |||||||||||||||||    
T  12748197 cacaatttttggcttgctgggcaagtttttcaggataaggttg 12748155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 312
Target Start/End: Complemental strand, 34570955 - 34570825
Alignment:
Q  172 agaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgac 271  Q
    |||||||||||||||||| |||| |||||||||||||  ||| |||   |||||||||||||          || ||||||| |||||||||||||||||    
T  34570955 agaatcgtgacacgatttagcaagcgtgtcacgattttccaacgccgaaagcatgttttgca----------tcgtgacacgattttgggaaaacgtgac 34570866  T
Q  272 atgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    | ||||||||||||| |||  ||||||||||||||||||||    
T  34570865 acgattttcggcttgctggacaagttttcaggataaggttg 34570825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 56179116 - 56179035
Alignment:
Q  232 cagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||    
T  56179116 cagggcgtccaatcgtgacacgattttgggaaaacgtgacatgatttttggcttgctgggcaagattttcaggataaggttg 56179035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 35661902 - 35661978
Alignment:
Q  236 gtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||| ||||||| ||||||||||| ||| || |||||||||||||||||| | ||||||||||||||||||    
T  35661902 gtgtccaatcgtgacacgattttgggaaaatgtgtcacgattttcggcttgttgggcacgttttcaggataaggttg 35661978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 272
Target Start/End: Original strand, 3909716 - 3909814
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||||||   || | ||||||||||| |||||| | ||||||||||||||| |||||| |||| ||||||| |||| ||||||| |||||    
T  3909716 aatcgtgacacgatttttgaagcatgtcacgattttgcaatgtcgtgagcatgttttgcacggtgtcaaatcgtgacacgatttttggaaaacatgaca 3909814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 6742931 - 6743068
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||    | ||||||||||||| |||| | |  |||| |||||| ||||||| | |||| || |||| ||||||||||||||||||     
T  6742931 aatcgtgacacgatttcatcaacgtgtcacgattttgcaacgtcgagagc-tgtttttcagggtgcctaatcgtggcacgtttttgggaaaacgtgacac 6743029  T
Q  274 gattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||   ||||||||| | ||||||||||||||||||    
T  6743030 gattttaaacttgttgggcacgttttcaggataaggttg 6743068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 312
Target Start/End: Complemental strand, 5370575 - 5370486
Alignment:
Q  224 atgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagt-tttcaggataaggttg 312  Q
    ||||||| ||||| |||||||| ||||||| |||||||||| ||||||| |||||| |||||| |||| |||  ||||||||||||||||    
T  5370575 atgtttttcagggcgtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgctgggcaagactttcaggataaggttg 5370486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 41639028 - 41639104
Alignment:
Q  236 gtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||| ||||| ||||||| |||||| ||||||||||| |||||||  ||||||||| | ||||||||||||||||||    
T  41639028 gtgttcaatcgtgacacgattttggaaaaacgtgacacgattttcaacttgttgggcacgttttcaggataaggttg 41639104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 50263383 - 50263326
Alignment:
Q  255 ttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||||||| ||| ||||||||||||| |||| |||||||||| |||||||||    
T  50263383 ttttgggaaaacgtaacacgattttcggcttggtgggtaagttttcagaataaggttg 50263326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 27417656 - 27417580
Alignment:
Q  236 gtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||| ||||| ||||||| |||||||||||||||||| |||||||  |||||| || | | ||||||||||||||||    
T  27417656 gtgttcaatcgtgacacgattttgggaaaacgtgacacgattttcaacttgttcggcacggtttcaggataaggttg 27417580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 5268766 - 5268853
Alignment:
Q  226 gttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||| |||||||  ||||| || |||| |||||||||||||||||| |||||||   ||||||||| | ||||||||||||||||||    
T  5268766 gtttttcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttcaaacttgttgggtacgttttcaggataaggttg 5268853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 36314812 - 36314883
Alignment:
Q  241 caatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||| || |||| |||||||||||||||||| |||||||  |||| |||| | ||||||||||||||||||    
T  36314812 caatcgtgtcacgattttgggaaaacgtgacacgattttcaacttgctgggcacgttttcaggataaggttg 36314883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 36329021 - 36329092
Alignment:
Q  241 caatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||| || |||| |||||||||||||||||| |||||||  |||| |||| | ||||||||||||||||||    
T  36329021 caatcgtgtcacgattttgggaaaacgtgacacgattttcaacttgctgggcacgttttcaggataaggttg 36329092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 312
Target Start/End: Original strand, 40630425 - 40630523
Alignment:
Q  213 atgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||| |||||||||||||  | |||||||||| || |||| |||||||||||||||||| ||||||| ||||| | || |  ||||||| |||||||||    
T  40630425 atgccgtgagcatgttttgt-gagtgtccaatcgtgtcacgattttgggaaaacgtgacacgattttcagcttgctaggcacattttcagaataaggttg 40630523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 29254205 - 29254251
Alignment:
Q  266 cgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||||||||||||||||||| |||| ||||| |||||||||    
T  29254205 cgtgacatgattttcggcttgttgggcaagtattcagaataaggttg 29254251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 8653109 - 8653150
Alignment:
Q  168 gtgaagaatcgtgacacgatttggcaaccgtgtcacgatttc 209  Q
    |||||||||||||||| ||||||||||||||||||| |||||    
T  8653109 gtgaagaatcgtgacatgatttggcaaccgtgtcacaatttc 8653150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 8664916 - 8664957
Alignment:
Q  168 gtgaagaatcgtgacacgatttggcaaccgtgtcacgatttc 209  Q
    |||||||||||||||| ||||||||||||||||||| |||||    
T  8664916 gtgaagaatcgtgacatgatttggcaaccgtgtcacaatttc 8664957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 16628431 - 16628492
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc 280  Q
    |||||||| |||||||||||  ||||| || |||| |||||||||||||||||| |||||||    
T  16628431 tgagcatgctttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 16628492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 3778085 - 3778025
Alignment:
Q  220 gagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc 280  Q
    ||||||| |||||||||||  ||||| || |||| |||||||||||||||||| |||||||    
T  3778085 gagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 3778025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 8689079 - 8689150
Alignment:
Q  242 aatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    |||| ||||||| |||||||||||||||||| |||||||   |||| |||| | ||||||||||||||||||    
T  8689079 aatcgtgacacgattttgggaaaacgtgacacgattttcaaacttgctgggtacgttttcaggataaggttg 8689150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 280
Target Start/End: Complemental strand, 13992836 - 13992731
Alignment:
Q  174 aatcgtgacacga-tttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||| ||||||| | ||| ||||||||||  ||| | ||||| || ||||||||||| | |||| ||||||| |||||||||| |||||||    
T  13992836 aatcgtgacacgaatttggcatc-gtgacacgatttcgtgatgtcgtgagc-tggtttgcagggtgccaaatcgtgacacgattttgggaaatcgtgaca 13992739  T
Q  273 tgattttc 280  Q
     |||||||    
T  13992738 cgattttc 13992731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 312
Target Start/End: Complemental strand, 5143821 - 5143704
Alignment:
Q  196 cgtgtcacgatttcgcaatgccatgagcatgttttgcaggg-tgtccaatcatgacacggttttgggaaaacgtgacatgattttcgg-cttgttgggaa 293  Q
    |||| |||||||| |||||| | ||||| || ||||||||| || |||||| || |||| ||||| ||||| |||||| |||||||   ||||||||| |    
T  5143821 cgtgacacgattttgcaatgtcgtgagc-tggtttgcaggggtgaccaatcgtggcacgattttgtgaaaatgtgacacgattttcaaacttgttgggta 5143723  T
Q  294 agttttcaggataaggttg 312  Q
     ||||||||||||||||||    
T  5143722 cgttttcaggataaggttg 5143704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 280
Target Start/End: Complemental strand, 5148259 - 5148154
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||    |||||| |||||||| |||||| | |||||  |||| |||||||| |||||| || |||| ||||| |||||| |||||     
T  5148259 aatcgtgacacgattttatcaccgtgacacgattttgcaatgtcgtgagctagttt-gcagggtgaccaatcgtggcacgattttgtgaaaacttgacac 5148161  T
Q  274 gattttc 280  Q
    |||||||    
T  5148160 gattttc 5148154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 54200363 - 54200317
Alignment:
Q  266 cgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||| ||||||||||||| |||| ||||||||| ||||||||||    
T  54200363 cgtgacacgattttcggcttgctgggcaagttttcaagataaggttg 54200317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 25861605 - 25861686
Alignment:
Q  232 cagggtgtccaatcatgacacggttttgggaaaa-cgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||  ||||| || |||| ||||||||||| ||||||| |||||||  |||| |||| | ||||||||||||||||||    
T  25861605 cagggtgctcaatcgtgtcacgattttgggaaaaacgtgacacgattttcaacttgctgggcatgttttcaggataaggttg 25861686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 31495859 - 31495756
Alignment:
Q  174 aatcgtgacacga-tttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||| ||||||| | ||| ||||||||||  ||||| ||||| || ||||||||||| | |||| ||||||| || ||||||| |||||||    
T  31495859 aatcgtgacacgaatttggcatc-gtgacacgatttcgtgatgccgtgagc-tggtttgcagggtgccaaatcgtgacacgattgtgggaaatcgtgaca 31495762  T
Q  273 tgattt 278  Q
     |||||    
T  31495761 cgattt 31495756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 5396272 - 5396344
Alignment:
Q  241 caatcatgacacggttttgggaaaacgtgacatgattttcgg-cttgttgggaaagttttcaggataaggttg 312  Q
    ||||| || |||| |||||| ||||||||||| |||||||   ||||||||| | ||||||||||||||||||    
T  5396272 caatcgtgtcacgattttggaaaaacgtgacacgattttcaaacttgttgggtatgttttcaggataaggttg 5396344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 10959 - 11097
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||   |  ||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||| ||| ||||||     
T  10959 aatcgtgacacgatttcataggcgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaatgtgacac 11058  T
Q  274 gattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||| ||| |||| ||||||||||||||||||||    
T  11059 gattttcggtttgctgggcaagttttcaggataaggttg 11097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 173 - 311
Target Start/End: Complemental strand, 4553198 - 4553060
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||||||||  || |||||||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||| ||||| |||||||||| |    
T  4553198 gaatcgtgacacgatttgtgaagcgtgtcacgatttcgcaatgccgtgaacatgttttgcagggtatccaatcgtgacacgattttgagaaaacgtgata 4553099  T
Q  273 tgattttcggcttgttgggaaagttttcaggataaggtt 311  Q
    ||||||||| |||||| |  | |||||||||||||||||    
T  4553098 tgattttcgacttgtttgacacgttttcaggataaggtt 4553060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 173 - 312
Target Start/End: Original strand, 11348120 - 11348258
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||||||||  || ||||||||||||| |||||| |  |||| |||||||||||||||| |||| ||||||| ||||||  ||||||||||    
T  11348120 gaatcgtgacacgatttgtgaagcgtgtcacgattttgcaatgtcgagagc-tgttttgcagggtgtctaatcgtgacacgattttggagaaacgtgaca 11348218  T
Q  273 tgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
     |||||||||||||||||| ||||||||||||||||||||    
T  11348219 cgattttcggcttgttgggcaagttttcaggataaggttg 11348258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 158 - 308
Target Start/End: Original strand, 192997 - 193147
Alignment:
Q  158 tttggtgaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttt 257  Q
    ||||| |||||||||||| ||||||| |||||||||| |||||||||||||   || ||  |||||||| |||||||||||||||||||||||||  |||    
T  192997 tttggagaaagtgaagaaacgtgacatgatttggcaatcgtgtcacgatttttgaaggcagtgagcatggtttgcagggtgtccaatcatgacacaattt 193096  T
Q  258 tgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataag 308  Q
    ||| ||||||||| |  |||||||||||| |||| ||||||| ||||||||    
T  193097 tggaaaaacgtgataccattttcggcttgctgggcaagtttttaggataag 193147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 37033836 - 37033698
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||   |  ||||||||||||| |||||| | ||||||||||||||||||||||||||| ||||||| |||| || |||| |||||     
T  37033836 aatcgtgacacgatttcataggcgtgtcacgattttgcaatgtcgtgagcatgttttgcagggtgtccaatcgtgacacgattttcgggaaacatgacac 37033737  T
Q  274 gattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||| ||||  ||| ||||||||||||||||||||    
T  37033736 gattttcgccttgcagggcaagttttcaggataaggttg 37033698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 31658858 - 31658995
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||   |  ||||||||||||| |||||| |  |||| |||||||||||||| |||||| ||||||| ||||||||||||||||||     
T  31658858 aatcgtgacacgatttcataggcgtgtcacgattttgcaatgtcgagagc-tgttttgcagggtgcccaatcgtgacacgattttgggaaaacgtgacac 31658956  T
Q  274 gattttcggcttgttgggaaagttttcaggataaggttg 312  Q
     |||||  ||||| |||||||||||||||||||||||||    
T  31658957 aattttttgcttgctgggaaagttttcaggataaggttg 31658995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 44454779 - 44454916
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||   || ||||||||||||| || |||||  ||||||||||| | | |||||||||| ||||||| ||||||| ||||||||||     
T  44454779 aatcgtgacacgatttcataagcgtgtcacgatttggctatgccgagagcatgtttt-ctgagtgtccaatcgtgacacgattttggggaaacgtgacac 44454877  T
Q  274 gattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||||||| |||| ||||||||| ||||||||||    
T  44454878 gattttcggcttgctgggcaagttttcaagataaggttg 44454916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 173 - 312
Target Start/End: Original strand, 49917968 - 49918106
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||||||||  || |||||||| |||| |||||| |  |||| |||||||||||||| |||||| ||||||| |||| | |||||||||||    
T  49917968 gaatcgtgacacgatttgtgaagcgtgtcacaattttgcaatgtcgagagc-tgttttgcagggtgcccaatcgtgacacgattttcgaaaaacgtgaca 49918066  T
Q  273 tgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
     ||||||   |||| |||| | ||||||||||||||||||    
T  49918067 cgatttttaacttgctgggcacgttttcaggataaggttg 49918106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 312
Target Start/End: Complemental strand, 37879658 - 37879520
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||||||||  || ||||||||||||| |||||| |  |||  ||||||||||||||  ||||| ||||||| |||||| |||| ||||||    
T  37879658 gaatcgtgacacgatttgtgaagcgtgtcacgattttgcaatgtcgagagt-tgttttgcagggtgctcaatcgtgacacgattttggaaaaatgtgaca 37879560  T
Q  273 tgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
     ||||||| ||||  |||  ||||||| ||||||||||||    
T  37879559 cgattttcagcttactggacaagtttttaggataaggttg 37879520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 20762348 - 20762429
Alignment:
Q  232 cagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
    ||||| |||||||| ||||||| |||||||||| ||||||| |||||| ||||||||||| ||| |||||||||||||||||    
T  20762348 cagggcgtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgttgggcaagattttcaggataaggttg 20762429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 28220725 - 28220665
Alignment:
Q  225 tgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggctt 285  Q
    |||||||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||    
T  28220725 tgttttgcagggtgcccaatcgtgacacgattttgggaaaacgtgacacgattttcggctt 28220665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 28223920 - 28223860
Alignment:
Q  225 tgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggctt 285  Q
    |||||||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||    
T  28223920 tgttttgcagggtgcccaatcgtgacacgattttgggaaaacgtgacacgattttcggctt 28223860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 312
Target Start/End: Original strand, 3156486 - 3156624
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||||||||  || ||||||||||||| ||||||    |||| | |||||||||||| | |||| ||||||| |||||||||||| | |||    
T  3156486 gaatcgtgacacgatttgtgaagcgtgtcacgattttgcaatgttgagagc-tattttgcagggtgccaaatcgtgacacgattttgggaaaacataaca 3156584  T
Q  273 tgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
     |||||| || ||| |||  | ||||||||||||||||||    
T  3156585 cgatttttggtttgctggacacgttttcaggataaggttg 3156624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 42298638 - 42298592
Alignment:
Q  163 tgaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttc 209  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  42298638 tgaaagtgaagaatcatgacacgatttggcaaccgtgtcacgatttc 42298592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 3188970 - 3189108
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgc-aatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||| ||||||||| ||||||||||||| |  |||| |  |||  |||||| ||||| |||||||| ||||||  ||||||||||||||||||    
T  3188970 aatcgtgacacaatttggcaagcgtgtcacgattttggtaatgtcgagagt-tgtttt-cagggcgtccaatcgtgacacaattttgggaaaacgtgaca 3189067  T
Q  273 tgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
     |||||||| |||| |||| ||| |||| ||||||||||||    
T  3189068 cgattttcgacttgctgggcaagttttttaggataaggttg 3189108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 3197787 - 3197925
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgc-aatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||| ||||||||| ||||||||||||| |  |||| |  |||  |||||| ||||| |||||||| ||||||  ||||||||||||||||||    
T  3197787 aatcgtgacacaatttggcaagcgtgtcacgattttggtaatgtcgagagt-tgtttt-cagggcgtccaatcgtgacacaattttgggaaaacgtgaca 3197884  T
Q  273 tgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
     |||||||| |||| |||| ||| |||| ||||||||||||    
T  3197885 cgattttcgacttgctgggcaagttttttaggataaggttg 3197925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 3206605 - 3206743
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgc-aatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||| ||||||||| ||||||||||||| |  |||| |  |||  |||||| ||||| |||||||| ||||||  ||||||||||||||||||    
T  3206605 aatcgtgacacaatttggcaagcgtgtcacgattttggtaatgtcgagagt-tgtttt-cagggcgtccaatcgtgacacaattttgggaaaacgtgaca 3206702  T
Q  273 tgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
     |||||||| |||| |||| ||| |||| ||||||||||||    
T  3206703 cgattttcgacttgctgggcaagttttttaggataaggttg 3206743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 301
Target Start/End: Original strand, 10924843 - 10924969
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||   |  ||||||||||||| |||||| |  || | |||||||||||||  |||||| ||||||| |||||| |||| ||||||     
T  10924843 aatcgtgacacgatttcataggcgtgtcacgattttgcaatgtcgagaac-tgttttgcagggtacccaatcgtgacacgattttggaaaaatgtgacac 10924941  T
Q  274 gattttcggcttgttgggaaagttttca 301  Q
    ||||||||||||| | || |||||||||    
T  10924942 gattttcggcttggtaggcaagttttca 10924969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 1833163 - 1833252
Alignment:
Q  196 cgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttg 286  Q
    |||||||||||||||||||||| ||||  ||||||||||  ||||||||  ||||||| |||||||||||| | ||| |||||| ||||||    
T  1833163 cgtgtcacgatttcgcaatgccgtgagt-tgttttgcagattgtccaatggtgacacgattttgggaaaacataacacgatttttggcttg 1833252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 37070283 - 37070211
Alignment:
Q  241 caatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||| || |||| |||||||||||||||||| |||||||   ||||||||| | ||||||||||||||||||    
T  37070283 caatcgtgtcacgattttgggaaaacgtgacacgattttcaaacttgttgggtacgttttcaggataaggttg 37070211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 13604191 - 13604276
Alignment:
Q  228 tttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||| ||||| |||| ||||||| ||||| | || |||||||||||||||   |||| |||  ||||||||||||||||||||    
T  13604191 tttgcagtgtgtcaaatcgtgacacgattttgtggaatcgtgacatgattttcaaacttgctggttaagttttcaggataaggttg 13604276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 29135762 - 29135807
Alignment:
Q  267 gtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||||||| ||||| |||| | ||||||||||||||||||    
T  29135762 gtgacatgattttcagcttgctgggcacgttttcaggataaggttg 29135807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 46064562 - 46064610
Alignment:
Q  178 gtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatg 226  Q
    |||||||||||||   |||||||||||||||||||| ||| ||||||||    
T  46064562 gtgacacgatttgtgtaccgtgtcacgatttcgcaaggccgtgagcatg 46064610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 173 - 312
Target Start/End: Complemental strand, 36318560 - 36318420
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacg-gttttgggaaaacgtgac 271  Q
    ||||||||||||||||||  || |||||||||||||||||||| |  |||||||||||||||||||||||||| |||||||  ||||||| |||||||||    
T  36318560 gaatcgtgacacgatttgtgaaacgtgtcacgatttcgcaatgtcgagagcatgttttgcagggtgtccaatcgtgacacgatttttggggaaacgtgac 36318461  T
Q  272 atgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    | ||||||||||||| |||  | ||||||||||||||||||    
T  36318460 acgattttcggcttgctggccacgttttcaggataaggttg 36318420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 39284516 - 39284654
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgtttt-gcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||| ||||||| |||||||||||||  | | ||  |||||||| ||| ||||||||||| ||| ||||||| ||||||||||||||||||    
T  39284516 aatcgtgacacgaattggcaaacgtgtcacgatttt-ctaggcagtgagcatggtttcgcagggtgtcctatcgtgacacgattttgggaaaacgtgaca 39284614  T
Q  273 tgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
      |||||||||||| |||||||||||||||||||||||||    
T  39284615 caattttcggcttgctgggaaagttttcaggataaggttg 39284654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 196 - 312
Target Start/End: Complemental strand, 2837370 - 2837255
Alignment:
Q  196 cgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag 295  Q
    ||||||||||||| |||||| || ||||  |||||||||||||||||||| ||||||| |||||||||||||||||| |||||||  |||| |||| |||    
T  2837370 cgtgtcacgattttgcaatgtcaagagcg-gttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcaccttgctgggtaag 2837272  T
Q  296 ttttcaggataaggttg 312  Q
    |||||||||||||||||    
T  2837271 ttttcaggataaggttg 2837255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 36988624 - 36988486
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgc-aatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    |||||||| |||||||||||| ||||||||||||| |  |||| |  |||| |||||| |||||||||||||| ||||| | ||||||||||||||||||    
T  36988624 aatcgtgagacgatttggcaagcgtgtcacgattttggtaatgtcgagagc-tgtttt-cagggtgtccaatcgtgacatgattttgggaaaacgtgaca 36988527  T
Q  273 tgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
     |||||||| |||| |||| ||| |||||||||||||||||    
T  36988526 cgattttcgacttgctgggcaagtttttcaggataaggttg 36988486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 164 - 279
Target Start/End: Original strand, 45726416 - 45726530
Alignment:
Q  164 gaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaa 263  Q
    |||||||||||| ||||||||||||||||||||||||||||||||  | | ||  |||||||| ||| |||||||||||||  ||||||| ||||||| |    
T  45726416 gaaagtgaagaaacgtgacacgatttggcaaccgtgtcacgattt-tctaggcagtgagcatgattttcagggtgtccaattgtgacacgattttgggca 45726514  T
Q  264 aacgtgacatgatttt 279  Q
    || |||||| ||||||    
T  45726515 aatgtgacacgatttt 45726530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 29867499 - 29867637
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgc-aatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||||||||||| |||| |||||||| |  |||| |  |||  |||||| |||||||||||||| ||||||| ||||||||||||||||||    
T  29867499 aatcgtgacacgatttggcaagcgtgacacgattttggtaatgtcgagagt-tgtttt-cagggtgtccaatcgtgacacgattttgggaaaacgtgaca 29867596  T
Q  273 tgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
     |||||||| |||| |||| ||| |||||| ||||||||||    
T  29867597 cgattttcgacttgctgggcaagtttttcaagataaggttg 29867637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 34389432 - 34389294
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgc-aatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    |||| |||||||||||||||| ||||||||||||| |  |||| |  |||  |||||| |||||||||||||| ||||||| ||||||||||||||||||    
T  34389432 aatcatgacacgatttggcaagcgtgtcacgattttggtaatgtcgagagt-tgtttt-cagggtgtccaatcgtgacacgattttgggaaaacgtgaca 34389335  T
Q  273 tgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
     |||||||   |||| |||| | ||||||||||||||||||    
T  34389334 cgattttcaaacttgctgggtacgttttcaggataaggttg 34389294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 1632413 - 1632369
Alignment:
Q  165 aaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttc 209  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  1632413 aaagtgaagaatcgtgacacgttttggcaaccgtgtcacgatttc 1632369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 6595486 - 6595406
Alignment:
Q  232 cagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag-ttttcaggataaggtt 311  Q
    |||||||||||||| ||||||  |||||||||||||||||| |||||| |||||| ||||  || ||||||||||||||||    
T  6595486 cagggtgtccaatcgtgacacaattttgggaaaacgtgacacgatttttggcttgctgggctagattttcaggataaggtt 6595406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 45099432 - 45099512
Alignment:
Q  233 agggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
    ||||||||||||| ||||||  ||||||||||  |||||| |||||| |||||| |||| ||| |||||||||||||||||    
T  45099432 agggtgtccaatcgtgacacaattttgggaaattgtgacacgatttttggcttgctgggcaagattttcaggataaggttg 45099512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 312
Target Start/End: Complemental strand, 20522761 - 20522666
Alignment:
Q  218 atgagcatg-ttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||| |||| |||||||  ||||| || |||| ||||| |||||||||||| |||||||  |||| |||| | ||||||||||||||||||    
T  20522761 atgagcatggtttttcagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaacttgctgggcacgttttcaggataaggttg 20522666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 312
Target Start/End: Complemental strand, 39483407 - 39483320
Alignment:
Q  226 gttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||| |||||||  ||||| || |||| |||||||||||||||||| |||||||   ||||||||| | ||||||||||||||||||    
T  39483407 gtttttcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttcaaacttgttgggtacgttttcaggataaggttg 39483320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 14698600 - 14698662
Alignment:
Q  250 cacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||| |||||||||||||||||| |||||||  ||||||||| |  |||||||||||||||||    
T  14698600 cacgattttgggaaaacgtgacacgattttcaacttgttgggcacattttcaggataaggttg 14698662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 312
Target Start/End: Original strand, 17863856 - 17863950
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
    |||||||| ||| |||||||||||||| |||||   |||||||||||||||||| ||||||   |||| |||| ||| |||| ||||||||||||    
T  17863856 tgagcatggttttcagggtgtccaatcgtgacataattttgggaaaacgtgacacgattttttacttgctgggcaagtttttgaggataaggttg 17863950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 312
Target Start/End: Original strand, 33528183 - 33528277
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||| |||||||||||  ||||| || |||| |||||||||||||||||| |||||||   |||| |||| | |||||||| |||||||||    
T  33528183 tgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttcaaacttgctgggtacgttttcagaataaggttg 33528277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 35447605 - 35447512
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||  ||| |||||||| ||||  | ||||| ||||||||||| |||||| |||| |||| |||| ||| ||||||||| ||||||||||    
T  35447605 tgagcattgttttcagggtgttcaattgtaacacgattttgggaaaatgtgacacgattatcggtttgtcgggcaagttttcaagataaggttg 35447512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 23078062 - 23078125
Alignment:
Q  250 cacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    |||| |||||||||||||||||| |||||||   ||||||||| | ||||||||||||||||||    
T  23078062 cacgattttgggaaaacgtgacacgattttcaaacttgttgggtacgttttcaggataaggttg 23078125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 21630446 - 21630389
Alignment:
Q  255 ttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||||| ||||| |||||||  |||| |||| | ||||||||||||||||||    
T  21630446 ttttgggaaaacatgacacgattttcaacttgctgggcacgttttcaggataaggttg 21630389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 28258715 - 28258831
Alignment:
Q  196 cgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaa 294  Q
    |||| |||||||| | |||||| ||||| || ||||||||||||| |||| || |||  ||||| |||| ||||||| |||||||   |||| |||  ||    
T  28258715 cgtgacacgattttgtaatgccgtgagc-tggtttgcagggtgtcaaatcgtggcacaattttgtgaaatcgtgacacgattttcaaacttgctggttaa 28258813  T
Q  295 gttttcaggataaggttg 312  Q
    ||||||||||||||||||    
T  28258814 gttttcaggataaggttg 28258831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 17057757 - 17057725
Alignment:
Q  220 gagcatgttttgcagggtgtccaatcatgacac 252  Q
    |||||||||||||||||||||||||| ||||||    
T  17057757 gagcatgttttgcagggtgtccaatcgtgacac 17057725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 17085740 - 17085708
Alignment:
Q  220 gagcatgttttgcagggtgtccaatcatgacac 252  Q
    |||||||||||||||||||||||||| ||||||    
T  17085740 gagcatgttttgcagggtgtccaatcgtgacac 17085708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 17865693 - 17865621
Alignment:
Q  241 caatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||| |||| ||||||||||| |||||| |||||||   |||| |||| | ||||||||||||||||||    
T  17865693 caatcatgtcacgattttgggaaaatgtgacacgattttcaaacttgctgggtacgttttcaggataaggttg 17865621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 280
Target Start/End: Original strand, 30832986 - 30833069
Alignment:
Q  196 cgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc 280  Q
    |||| ||||||||||  ||||| ||||| || ||||||||||| | |||| ||||||| | |||||||| ||||||| |||||||    
T  30832986 cgtgacacgatttcgtgatgccgtgagc-tggtttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgattttc 30833069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 162 - 312
Target Start/End: Original strand, 21593056 - 21593205
Alignment:
Q  162 gtgaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttggg 261  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  | | |   |||||||| ||| |||||||||||||| ||||||  |||||||    
T  21593056 gtgaaagtgaagaatcgtgacatgatttggcaaccgtgtcacgatttt-ctaggtagtgagcatggttttcagggtgtccaatcgtgacacaattttggg 21593154  T
Q  262 aaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||||| ||||||||||||| |||| | ||||| ||||||||||||    
T  21593155 aaaacgtgacacgattttcggcttgctgggcatgtttttaggataaggttg 21593205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 603719 - 603648
Alignment:
Q  241 caatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  603719 caatcgtgacacgattttgggaaaacgtgacatgattttcggcttgctgggcaagttttcaggataaggttg 603648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 9183500 - 9183421
Alignment:
Q  233 agggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||||||| ||||||| |||||||||||||||||| |||||| | |||| |||| ||||||||||||||||||||    
T  9183500 agggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttttgacttgctgggcaagttttcaggataaggttg 9183421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 22964229 - 22964142
Alignment:
Q  225 tgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||||||||| ||||| ||| ||| |||||||||||||||||| |||||| |||||| |||  ||||||||||||||||||||    
T  22964229 tgttttgcagggtgttcaatcgtgatacgattttgggaaaacgtgacacgatttttggcttgctggacaagttttcaggataaggttg 22964142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 225 - 312
Target Start/End: Original strand, 23824164 - 23824251
Alignment:
Q  225 tgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||||||||| ||||| ||| ||| |||||||||||||||||| |||||| |||||| |||  ||||||||||||||||||||    
T  23824164 tgttttgcagggtgttcaatcgtgatacgattttgggaaaacgtgacacgatttttggcttgctggacaagttttcaggataaggttg 23824251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 312
Target Start/End: Complemental strand, 3809450 - 3809338
Alignment:
Q  196 cgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag 295  Q
    |||| |||||||| |||||| |  |||| ||||| | |||||| |||||| ||||||| ||||||| |||||||||| ||||||||||   |||||||||    
T  3809450 cgtgacacgattttgcaatgtcgagagc-tgtttcgaagggtgcccaatcgtgacacgattttggggaaacgtgacacgattttcggc---ttgggaaag 3809355  T
Q  296 ttttcaggataaggttg 312  Q
    |||||||||||||||||    
T  3809354 ttttcaggataaggttg 3809338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 17759356 - 17759496
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||||||||  || |||||||| |||| |||||| |  |||  ||| ||  |||||| |||| | ||||||| ||||||| ||||||||||    
T  17759356 gaatcgtgacacgatttgtgaagcgtgtcacaattttgcaatgtcgagagt-tgtattttagggtgcccaaccgtgacacgattttggggaaacgtgaca 17759454  T
Q  273 tgattttcggcttgttgggaaagttttcaggataaggttgtg 314  Q
      |||||||||||| |||  ||||||||||||||||||||||    
T  17759455 caattttcggcttgctggacaagttttcaggataaggttgtg 17759496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 21272526 - 21272642
Alignment:
Q  196 cgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag 295  Q
    ||||||||||||| ||||| |||  ||| ||||||| ||||||||||||| ||||||| ||||||| || |||| || |||||| | | |||| || | |    
T  21272526 cgtgtcacgatttggcaataccaatagcttgttttgaagggtgtccaatcgtgacacgattttgggtaatcgtgtcacgatttttgacatgtttggcacg 21272625  T
Q  296 ttttcaggataaggttg 312  Q
    |||||||||||||||||    
T  21272626 ttttcaggataaggttg 21272642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 10076729 - 10076844
Alignment:
Q  196 cgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag 295  Q
    ||||||||||||| |||||| |  |||| |||||||||||||| |||||||||| ||| |||||||||||||||| | ||||||   |||| ||   | |    
T  10076729 cgtgtcacgattttgcaatgtcgagagc-tgttttgcagggtgcccaatcatgatacgattttgggaaaacgtgatacgatttttaacttgctgattacg 10076827  T
Q  296 ttttcaggataaggttg 312  Q
    |||||||||||||||||    
T  10076828 ttttcaggataaggttg 10076844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 33211709 - 33211597
Alignment:
Q  197 gtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagt 296  Q
    |||||||||||| || |||||  ||||||||||| | | |||||||||| | ||||| |||||| |||||||| ||||||||| ||||||||||| | ||    
T  33211709 gtgtcacgatttggctatgccgagagcatgtttt-ctgagtgtccaatcgtaacacgattttggaaaaacgtgtcatgatttt-ggcttgttgggcacgt 33211612  T
Q  297 tttcaggataaggtt 311  Q
    ||| |||||| ||||    
T  33211611 ttttaggatatggtt 33211597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 24435568 - 24435625
Alignment:
Q  255 ttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||||||||||| |||||||  |||||| || | ||||||||||||||||||    
T  24435568 ttttgggaaaacgtgacacgattttcaacttgtttggcacgttttcaggataaggttg 24435625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 33160882 - 33160799
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgc-aatgccatgagcatgttttgcagggtgtccaatcatgacacggtttt 258  Q
    ||||||||||||||||||||| ||||||||||||| |  |||| || |||| |||||| |||||||||||||| ||||||| ||||    
T  33160882 aatcgtgacacgatttggcaagcgtgtcacgattttggtaatgtcaagagc-tgtttt-cagggtgtccaatcgtgacacgatttt 33160799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 280
Target Start/End: Complemental strand, 22709602 - 22709497
Alignment:
Q  174 aatcgtgacacga-tttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    |||| |||||||| ||||||||| ||| |||||||| |  ||||||||||| || ||||||||||| | |||| ||||||| | |||||||| |||||||    
T  22709602 aatcatgacacgaatttggcaac-gtgacacgattttgtgatgccatgagc-tggtttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgaca 22709505  T
Q  273 tgattttc 280  Q
     |||||||    
T  22709504 cgattttc 22709497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 280
Target Start/End: Original strand, 5017011 - 5017115
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||    | |||||||||||||| ||| ||  |||||||| |||||||||||  ||||| || |||| ||||| ||||||||||||     
T  5017011 aatcgtgacacgatttcatcaacgtgtcacgatttc-caa-gcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgagaaaacgtgacac 5017108  T
Q  274 gattttc 280  Q
    |||||||    
T  5017109 gattttc 5017115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 312
Target Start/End: Complemental strand, 31980047 - 31979961
Alignment:
Q  226 gttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||| |||||||  ||||| || |||| |||||| |||||||||||  ||||||  |||| |||| | ||||||||||||||||||    
T  31980047 gtttttcagggtgatcaatcgtgtcacgattttggaaaaacgtgacacaattttcaacttgctgggcacgttttcaggataaggttg 31979961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 26661423 - 26661488
Alignment:
Q  247 tgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||| ||||||||||| |||||| |||||||| |||| |||    ||||||||||||||||||    
T  26661423 tgacacgattttgggaaaatgtgacaagattttcgacttgctggactcgttttcaggataaggttg 26661488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 26767394 - 26767459
Alignment:
Q  247 tgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||| ||||||||||| |||||| |||||||| |||| |||    ||||||||||||||||||    
T  26767394 tgacacgattttgggaaaatgtgacaagattttcgacttgctggactcgttttcaggataaggttg 26767459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 31086031 - 31086092
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc 280  Q
    |||||||| |||||||||||  ||||| || |||| |||||| ||||||||||| |||||||    
T  31086031 tgagcatggtttgcagggtgctcaatcgtgtcacgattttggaaaaacgtgacacgattttc 31086092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 171 - 312
Target Start/End: Original strand, 32636441 - 32636581
Alignment:
Q  171 aagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtga 270  Q
    |||||||||||||||||||||||| |||||||| |||||   | ||  ||| ||||||||||| ||||||||||| ||||||| |||||||||||||||     
T  32636441 aagaatcgtgacacgatttggcaagcgtgtcaccatttct--aggcagtgaacatgttttgcaaggtgtccaatcgtgacacgattttgggaaaacgtgg 32636538  T
Q  271 catgattttcggcttgttgggaaag-ttttcaggataaggttg 312  Q
    || |||||||| |||| |||| ||| |||||||||||||||||    
T  32636539 cacgattttcgacttgctgggcaagtttttcaggataaggttg 32636581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 226 - 312
Target Start/End: Complemental strand, 42426732 - 42426646
Alignment:
Q  226 gttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||  |||||||| ||| |||| ||||||||||||||||||||    
T  42426732 gttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacaattttcggtttgctgggcaagttttcaggataaggttg 42426646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 226 - 312
Target Start/End: Complemental strand, 42428915 - 42428829
Alignment:
Q  226 gttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||    
T  42428915 gttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttttggcttgctgggcaagtttttaggataaggttg 42428829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 5057494 - 5057588
Alignment:
Q  218 atgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||  ||| |||||||||||||| ||||||| |||||| |||||||||||  ||||||| ||||||| | ||||||||||||||||||||    
T  5057494 atgagcatagttttcagggtgtccaatcgtgacacgattttggtaaaacgtgacacaattttcgacttgttgagcaagttttcaggataaggttg 5057588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 37438809 - 37438902
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaag-ttttcaggataaggtt 311  Q
    |||||||| ||| ||| |||||||||| ||||| | |||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||    
T  37438809 tgagcatggttttcagagtgtccaatcgtgacatgattttgggaaaacgtgacacgatttttggcttgttgggcaagattttcaggataaggtt 37438902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 30683456 - 30683319
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgc-aatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||| ||||| ||| ||||||||||||| |  |||| |  ||| ||||||| ||| |||||||||| ||||||  ||||||||||||||||||    
T  30683456 aatcgtgacacaatttgacaagcgtgtcacgattttggtaatgtcgagag-atgtttt-cagagtgtccaatcgtgacacaattttgggaaaacgtgaca 30683359  T
Q  273 tgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
     |||||||| |||| | || ||||||||||||||||||||    
T  30683358 cgattttcgacttgctaggcaagttttcaggataaggttg 30683319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 28751135 - 28751033
Alignment:
Q  171 aagaatcgtgacacgat--ttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgt 268  Q
    |||||||||||||||||  ||||||| ||| ||||||||||| |||| |  |||  ||||||||||||||| ||||| ||||||| ||||||||||||||    
T  28751135 aagaatcgtgacacgatatttggcaatcgtttcacgatttcgtaatgtcgagagt-tgttttgcagggtgttcaatcgtgacacgattttgggaaaacgt 28751037  T
Q  269 gaca 272  Q
    ||||    
T  28751036 gaca 28751033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 312
Target Start/End: Complemental strand, 16651174 - 16651033
Alignment:
Q  171 aagaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagca-tgttttgcagggtgtccaatcatgacacggttttgggaaaacgtg 269  Q
    |||||||||| |||||||| |||| |||| |||||||||  |  ||  |||||| |||||| ||||||   ||||||||||||| |||||||||||||||    
T  16651174 aagaatcgtgtcacgatttagcaaacgtgacacgatttctgag-gcagtgagcaatgtttttcagggtactcaatcatgacacgattttgggaaaacgtg 16651076  T
Q  270 acatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||| |||||    ||||||||| | ||||||||||||||||||    
T  16651075 acacgatttataacttgttgggtacgttttcaggataaggttg 16651033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 213008 - 213068
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgatttt 279  Q
    |||||||| ||||||||| |||||||| ||||||| |||||||||||||||||| ||||||    
T  213008 tgagcatggtttgcagggcgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 213068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 38746451 - 38746527
Alignment:
Q  236 gtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||| ||||| ||||||  |||||| ||||||||||| ||||||||||||| |||  ||||||||||||||||||||    
T  38746451 gtgttcaatcgtgacacatttttggaaaaacgtgacacgattttcggcttgctggacaagttttcaggataaggttg 38746527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 13487868 - 13487960
Alignment:
Q  218 atgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||| |||| |||||||  ||||| ||||||| ||||||||||||   ||  ||||||||||||| |||| ||||||||||||||||||||    
T  13487868 atgagcatatttttcagggtgctcaatcgtgacacgattttgggaaaacagcac--gattttcggcttgctgggcaagttttcaggataaggttg 13487960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 304
Target Start/End: Original strand, 40146717 - 40146798
Alignment:
Q  223 catgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcagga 304  Q
    |||| ||| |||||||||||||| ||||||| ||||||||||| |||||  ||||||| |||||||||  | ||||||||||    
T  40146717 catggttttcagggtgtccaatcgtgacacgattttgggaaaatgtgactcgattttcagcttgttggtcacgttttcagga 40146798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 12083693 - 12083831
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacat 273  Q
    ||||||||||||||||    | |||||||||||||| ||  ||  |||||||| ||| |||||||  ||||  || ||| |||||||||||||||||||     
T  12083693 aatcgtgacacgatttcatcaacgtgtcacgatttcccag-gcagtgagcatggtttacagggtgctcaattgtgtcacagttttgggaaaacgtgacac 12083791  T
Q  274 gattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||   ||||||||| | ||||||||||||||||||    
T  12083792 gattttcaaacttgttgggtacgttttcaggataaggttg 12083831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 13239372 - 13239509
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgc-aatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    |||||||||||||||||| || ||||||||||||| |  |||| |  |||| ||||||  ||||||| ||||| ||||| | ||||||| ||||||||||    
T  13239372 aatcgtgacacgatttggtaagcgtgtcacgattttggtaatgtcgagagc-tgttttt-agggtgttcaatcgtgacaagattttgggtaaacgtgaca 13239469  T
Q  273 tgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
     ||| || | |||| |||  ||||||||||||||||||||    
T  13239470 cgatctttgacttgctggacaagttttcaggataaggttg 13239509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 11916540 - 11916625
Alignment:
Q  228 tttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||||  ||||| || |||| |||||||||||||||||| |||||||   ||||||||| | ||||||||||| ||||||    
T  11916540 tttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttcaaacttgttgggtatgttttcaggatcaggttg 11916625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 19806046 - 19806130
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggtttt 258  Q
    ||||||||||||||||||  |  ||||||||||||| |||||| |  |||| |||||||||||||| |||||| ||||||| ||||    
T  19806046 gaatcgtgacacgatttgtgacgcgtgtcacgattttgcaatgtcgagagc-tgttttgcagggtgcccaatcgtgacacgatttt 19806130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 42310502 - 42310463
Alignment:
Q  149 aaaatttagtttggtgaaagtgaagaatcgtgacacgatt 188  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  42310502 aaaattgagtttggagaaagtgaagaatcgtgacacgatt 42310463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 533492 - 533538
Alignment:
Q  266 cgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||| | ||||||||||| |||| ||||||||||||||||||||    
T  533492 cgtgacacggttttcggcttgctgggcaagttttcaggataaggttg 533538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 535614 - 535660
Alignment:
Q  266 cgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||| ||||||||||||| |||  ||||||||||||||||||||    
T  535614 cgtgacacgattttcggcttgctggacaagttttcaggataaggttg 535660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 11181412 - 11181450
Alignment:
Q  220 gagcatgttttgcagggtgtccaatcatgacacggtttt 258  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  11181412 gagcatgttttgcagggtgtccaatcgtgacacgatttt 11181450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 14520731 - 14520673
Alignment:
Q  255 ttttgggaaaacgtgacatgattttcgg-cttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||||||||||| |||||||   ||||||||| | ||||||||||||||||||    
T  14520731 ttttgggaaaacgtgacacgattttcaaacttgttgggtacgttttcaggataaggttg 14520673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 27015025 - 27015071
Alignment:
Q  266 cgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||| ||||||| |||||||||| | ||||||||||||||||||    
T  27015025 cgtgacacgattttcagcttgttgggcatgttttcaggataaggttg 27015071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 9352872 - 9352988
Alignment:
Q  196 cgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaa 294  Q
    |||| |||||||| | |||||| ||||| || ||||||||||||| |||| || |||| || || |||| ||||||| |||||||   |||| |||  ||    
T  9352872 cgtgacacgattttgtaatgccgtgagc-tggtttgcagggtgtcaaatcgtggcacgattctgtgaaatcgtgacacgattttcaaacttgctggttaa 9352970  T
Q  295 gttttcaggataaggttg 312  Q
    ||||||||||||||||||    
T  9352971 gttttcaggataaggttg 9352988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 9789766 - 9789663
Alignment:
Q  174 aatcgtgacacga-tttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||| ||||||| | ||| ||||||||||  ||||| ||||| || ||||||||||| | |||| ||||||| || ||||||| |||||||    
T  9789766 aatcgtgacacgaatttggcatc-gtgacacgatttcgtgatgccgtgagc-tggtttgcagggtgccaaatcgtgacacgattgtgggaaatcgtgaca 9789669  T
Q  273 tgattt 278  Q
     |||||    
T  9789668 cgattt 9789663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 27014954 - 27015038
Alignment:
Q  173 gaatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggtttt 258  Q
    |||||||||||| |||||  || ||||||| ||||| |||||| |  |||| |||||||||||||| |||||| ||||||| ||||    
T  27014954 gaatcgtgacactatttgtgaagcgtgtcatgattttgcaatgtcgagagc-tgttttgcagggtgcccaatcgtgacacgatttt 27015038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 39469059 - 39468976
Alignment:
Q  174 aatcgtgacacgatttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggtttt 258  Q
    |||||||||||||||||  || ||||||| ||||| |||||| |  |||| ||||||||||| || |||||| ||||||| ||||    
T  39469059 aatcgtgacacgatttgtgaagcgtgtcatgattttgcaatgtcgagagc-tgttttgcaggatgcccaatcgtgacacgatttt 39468976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 220 - 312
Target Start/End: Complemental strand, 17767 - 17675
Alignment:
Q  220 gagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||||||||||||||||||| | ||||||| |||||||||||||||||| |||||| |||||| |||| ||| ||||| ||||||||||    
T  17767 gagcatgttttgcagggtgtccaaccgtgacacgattttgggaaaacgtgacacgatttttggcttgctgggcaagctttcatgataaggttg 17675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 81005 - 80912
Alignment:
Q  219 tgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttgggaaagttttcaggataaggttg 312  Q
    |||||||  ||| |||||| ||||||| ||||||| ||||||||||||||| || ||||||||||||| |||| ||||||||||||||||||||    
T  81005 tgagcattgttttcagggtatccaatcgtgacacgattttgggaaaacgtggcacgattttcggcttgctgggcaagttttcaggataaggttg 80912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 114263 - 114343
Alignment:
Q  232 cagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttcggcttgttggg-aaagttttcaggataaggttg 312  Q
    ||||| |||||||||||||||| | |||||||||||||||| |||||| |||||| |||| ||| |||||||||||||||||    
T  114263 cagggcgtccaatcatgacacgatattgggaaaacgtgacacgatttt-ggcttgctgggcaaaattttcaggataaggttg 114343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 280
Target Start/End: Original strand, 17474 - 17579
Alignment:
Q  174 aatcgtgacacga-tttggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||| ||||||| | ||| ||||||||||  ||||| ||||| || ||||||||||| | |||| ||||||| | |||||||| |||||||    
T  17474 aatcgtgacacgaatttggcatc-gtgacacgatttcgtgatgccgtgagc-tggtttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgaca 17571  T
Q  273 tgattttc 280  Q
    ||||||||    
T  17572 tgattttc 17579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 86124 - 86066
Alignment:
Q  220 gagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgatttt 279  Q
    ||||||| |||||||||||  |||||||| |||| |||||||||||||||||| ||||||    
T  86124 gagcatggtttgcagggtgctcaatcatg-cacgattttgggaaaacgtgacacgatttt 86066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 36401 - 36486
Alignment:
Q  228 tttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||||||| |||| || |||| ||||| ||||||||||||  ||||||   |||| |||| | ||||||||||||||||||    
T  36401 tttgcagggtgtcaaatcgtggcacgattttgtgaaaacgtgacacaattttcaaacttgctgggtacgttttcaggataaggttg 36486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 43477 - 43615
Alignment:
Q  174 aatcgtgacacgatt-tggcaaccgtgtcacgatttcgcaatgccatgagcatgttttgcagggtgtccaatcatgacacggttttgggaaaacgtgaca 272  Q
    ||||||||||||||| ||||| | ||| |||||||| | |||| | ||||| || ||| ||||||||| |||| ||  ||| ||||| |||| |||||||    
T  43477 aatcgtgacacgattgtggcatc-gtgacacgattttgtaatgtcgtgagc-tggtttacagggtgtcaaatcgtggtacgattttgtgaaatcgtgaca 43574  T
Q  273 tgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||||   |||| |||  ||||||||||||||||||||    
T  43575 tgattttcaaacttgctggttaagttttcaggataaggttg 43615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 132848 - 132933
Alignment:
Q  228 tttgcagggtgtccaatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaagttttcaggataaggttg 312  Q
    ||||||| ||||| |||| ||||||| ||||| | || |||||||||||||||   |||| |||  ||||||||||||||||||||    
T  132848 tttgcagtgtgtcaaatcgtgacacgattttgtggaatcgtgacatgattttcaaacttgctggttaagttttcaggataaggttg 132933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 434217 - 434290
Alignment:
Q  241 caatcatgacacggttttgggaaaacgtgacatgattttc-ggcttgttgggaaag-ttttcaggataaggttg 312  Q
    ||||| ||||||| |||||||||| ||||||| ||||||  |||||| |||| ||| |||||||||||||||||    
T  434217 caatcgtgacacgattttgggaaatcgtgacacgattttttggcttgctgggcaagattttcaggataaggttg 434290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University