View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18178_low_9 (Length: 692)

Name: NF18178_low_9
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18178_low_9
NF18178_low_9
[»] chr7 (17 HSPs)
chr7 (252-676)||(16543873-16544296)
chr7 (252-676)||(16621366-16621789)
chr7 (12-175)||(16544381-16544544)
chr7 (12-175)||(16621118-16621281)
chr7 (290-430)||(16911195-16911332)
chr7 (290-346)||(17515792-17515848)
chr7 (290-346)||(17537366-17537422)
chr7 (290-346)||(559885-559941)
chr7 (290-346)||(569794-569850)
chr7 (290-338)||(38411779-38411827)
chr7 (290-336)||(5200601-5200647)
chr7 (290-336)||(5209730-5209776)
chr7 (290-336)||(27967388-27967434)
chr7 (290-336)||(27976841-27976887)
chr7 (290-328)||(15974747-15974785)
chr7 (295-348)||(16474424-16474477)
chr7 (290-342)||(4185173-4185225)
[»] chr1 (10 HSPs)
chr1 (252-583)||(20500660-20500981)
chr1 (9-175)||(20501052-20501218)
chr1 (594-676)||(20500599-20500680)
chr1 (290-346)||(18750191-18750247)
chr1 (290-328)||(13463839-13463877)
chr1 (290-342)||(18597086-18597138)
chr1 (290-328)||(3650804-3650842)
chr1 (293-328)||(179827-179862)
chr1 (290-320)||(8402128-8402158)
chr1 (290-322)||(35197953-35197985)
[»] chr2 (24 HSPs)
chr2 (9-164)||(31355990-31356145)
chr2 (598-676)||(31356551-31356629)
chr2 (265-343)||(17686355-17686433)
chr2 (290-346)||(21851540-21851596)
chr2 (290-346)||(21859975-21860031)
chr2 (290-336)||(25262588-25262634)
chr2 (290-336)||(33308187-33308233)
chr2 (265-328)||(20622461-20622524)
chr2 (290-328)||(21322005-21322043)
chr2 (290-328)||(34543048-34543086)
chr2 (289-342)||(39756287-39756340)
chr2 (290-342)||(27425290-27425342)
chr2 (290-342)||(27440336-27440388)
chr2 (290-325)||(34529074-34529109)
chr2 (294-328)||(22186093-22186127)
chr2 (290-339)||(28479928-28479977)
chr2 (290-342)||(21150015-21150067)
chr2 (294-329)||(25995531-25995566)
chr2 (291-337)||(27605541-27605587)
chr2 (376-430)||(31356332-31356386)
chr2 (290-336)||(44373736-44373781)
chr2 (290-336)||(44389647-44389692)
chr2 (290-323)||(4281573-4281606)
chr2 (295-328)||(25193113-25193146)
[»] chr3 (17 HSPs)
chr3 (290-430)||(4504932-4505070)
chr3 (9-103)||(18040180-18040274)
chr3 (290-336)||(1005749-1005795)
chr3 (290-342)||(2216563-2216615)
chr3 (290-342)||(16289542-16289594)
chr3 (290-328)||(52987461-52987499)
chr3 (290-327)||(11262289-11262326)
chr3 (290-342)||(4444344-4444396)
chr3 (293-340)||(13603387-13603435)
chr3 (290-328)||(1775843-1775881)
chr3 (290-328)||(4887696-4887734)
chr3 (290-328)||(5517769-5517807)
chr3 (290-336)||(9184899-9184944)
chr3 (290-328)||(18954624-18954661)
chr3 (290-328)||(20053182-20053220)
chr3 (290-328)||(20075842-20075880)
chr3 (290-322)||(23755546-23755578)
[»] chr5 (8 HSPs)
chr5 (252-342)||(29185230-29185320)
chr5 (290-346)||(31549535-31549591)
chr5 (265-328)||(31411817-31411880)
chr5 (265-328)||(31422725-31422788)
chr5 (290-328)||(23568476-23568514)
chr5 (291-325)||(29189260-29189294)
chr5 (290-329)||(8949136-8949175)
chr5 (290-328)||(2826877-2826915)
[»] chr4 (13 HSPs)
chr4 (598-676)||(21400774-21400852)
chr4 (265-328)||(12997538-12997601)
chr4 (290-328)||(4749047-4749085)
chr4 (290-325)||(20866843-20866878)
chr4 (290-328)||(772289-772327)
chr4 (290-328)||(32215932-32215970)
chr4 (290-342)||(17141861-17141913)
chr4 (290-342)||(24923280-24923332)
chr4 (290-329)||(48077644-48077683)
chr4 (298-328)||(638076-638106)
chr4 (290-328)||(5405296-5405334)
chr4 (376-430)||(21400555-21400609)
chr4 (290-328)||(52296741-52296779)
[»] chr6 (15 HSPs)
chr6 (290-346)||(27048677-27048733)
chr6 (290-346)||(27058921-27058977)
chr6 (290-336)||(30996951-30996997)
chr6 (290-342)||(3042390-3042442)
chr6 (268-342)||(24919166-24919240)
chr6 (290-339)||(16587801-16587850)
chr6 (290-339)||(16607530-16607579)
chr6 (268-328)||(5995695-5995755)
chr6 (292-336)||(15390685-15390729)
chr6 (290-328)||(1141768-1141806)
chr6 (290-328)||(5488168-5488206)
chr6 (290-328)||(20216028-20216066)
chr6 (290-328)||(22110049-22110087)
chr6 (290-342)||(24296431-24296483)
chr6 (290-342)||(24310462-24310514)
[»] scaffold1120 (1 HSPs)
scaffold1120 (264-343)||(384-463)
[»] chr8 (10 HSPs)
chr8 (265-328)||(4838693-4838756)
chr8 (265-328)||(26872637-26872700)
chr8 (288-328)||(36577969-36578009)
chr8 (296-342)||(23091551-23091597)
chr8 (290-328)||(4836512-4836550)
chr8 (290-328)||(4841957-4841995)
chr8 (290-328)||(26875120-26875158)
chr8 (265-336)||(17663609-17663679)
chr8 (265-336)||(17682765-17682835)
chr8 (290-328)||(2750241-2750279)
[»] scaffold1896 (1 HSPs)
scaffold1896 (265-328)||(444-507)
[»] scaffold0027 (1 HSPs)
scaffold0027 (265-343)||(64648-64726)
[»] scaffold0016 (1 HSPs)
scaffold0016 (291-336)||(24491-24536)
[»] scaffold0609 (1 HSPs)
scaffold0609 (290-342)||(2505-2557)
[»] scaffold0206 (1 HSPs)
scaffold0206 (290-342)||(19505-19557)
[»] scaffold2141 (1 HSPs)
scaffold2141 (290-328)||(159-197)
[»] scaffold0853 (1 HSPs)
scaffold0853 (268-342)||(4260-4334)
[»] scaffold0669 (1 HSPs)
scaffold0669 (292-328)||(6035-6071)


Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 252 - 676
Target Start/End: Complemental strand, 16544296 - 16543873
Alignment:
Q  252 tgaagaacaatcttcatcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctcttttctnnn 351  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||       
T  16544296 tgaagaacaatcttcatcttctccgacgggattgtatcttccagcgcggtggccggtggtggcaccaccgcaccggaatttcaaactcctcttttctaaa 16544197  T
Q  352 nnnnncttttaacagattcgaaattcctttttcgttctaaactcaaatccggattcacaatttcaaaaacagttcacaaacactctagatctaagattaa 451  Q
         |||||||||| ||||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16544196 aaaa-cttttaacagtttcgaaattccattttcgttctaaattcaaatccagattcataatttcaaaaacagttcacaaacactctagatctaagattaa 16544098  T
Q  452 acacggcacaaagaaacaaaaatgaaactaccttttcttctctttttggattggtttatttgttgtagcttgtgatgattccggttcgttcctccttctt 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16544097 acacggcacaaagaaacaaaaatgaaactaccttttcttctctttttggattggtttatttgttgtagcttgtgatgatttcggttcgttcctccttctt 16543998  T
Q  552 taccttcaggtccgattcgaactcgtttgatgcttgtgtgagccgatttgaactcgtttggatgtagaaagtggcgagatgataatagatgagttgtttg 651  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16543997 caccttcaggtccgattcgaactcgtttgatgcttgtgtgagccgatttgaactcgtttggatgtagaaagtggcgagatgataatagacgagttgtttg 16543898  T
Q  652 ttggtaaaatcgcaggtgatgttat 676  Q
    |||||||||||||||||||||||||    
T  16543897 ttggtaaaatcgcaggtgatgttat 16543873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 252 - 676
Target Start/End: Original strand, 16621366 - 16621789
Alignment:
Q  252 tgaagaacaatcttcatcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctcttttctnnn 351  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||       
T  16621366 tgaagaacaatcttcatcttctccgacgggattgtatcttccagcgcggtggccggtggtggcaccaccgcaccggaatttcaaactcctcttttctaaa 16621465  T
Q  352 nnnnncttttaacagattcgaaattcctttttcgttctaaactcaaatccggattcacaatttcaaaaacagttcacaaacactctagatctaagattaa 451  Q
         |||||||||| ||||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16621466 aaaa-cttttaacagtttcgaaattccattttcgttctaaattcaaatccagattcataatttcaaaaacagttcacaaacactctagatctaagattaa 16621564  T
Q  452 acacggcacaaagaaacaaaaatgaaactaccttttcttctctttttggattggtttatttgttgtagcttgtgatgattccggttcgttcctccttctt 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16621565 acacggcacaaagaaacaaaaatgaaactaccttttcttctctttttggattggtttatttgttgtagcttgtgatgatttcggttcgttcctccttctt 16621664  T
Q  552 taccttcaggtccgattcgaactcgtttgatgcttgtgtgagccgatttgaactcgtttggatgtagaaagtggcgagatgataatagatgagttgtttg 651  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16621665 caccttcaggtccgattcgaactcgtttgatgcttgtgtgagccgatttgaactcgtttggatgtagaaagtggcgagatgataatagacgagttgtttg 16621764  T
Q  652 ttggtaaaatcgcaggtgatgttat 676  Q
    |||||||||||||||||||||||||    
T  16621765 ttggtaaaatcgcaggtgatgttat 16621789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 16544544 - 16544381
Alignment:
Q  12 aaaggtgcaccagattaaaagacagtttcaacaacagccatcagatcgtggaactatccagatctggtggcacaaaaacatgagggagcatgagataacg 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16544544 aaaggcgcaccagattaaaagacagtttcaacaacagccatcagatcgtggaattatccagatctggtggcacaaaaacatgagggagcatgagataacg 16544445  T
Q  112 gtggatgcacgcgcgtgggaacgagagtgagtataaaaggaatattctagtttaagatttcatt 175  Q
    | |||||||| ||||||||| |||||||||||||||||||||||||||  ||||||||||||||    
T  16544444 gaggatgcacacgcgtgggatcgagagtgagtataaaaggaatattctgatttaagatttcatt 16544381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 16621118 - 16621281
Alignment:
Q  12 aaaggtgcaccagattaaaagacagtttcaacaacagccatcagatcgtggaactatccagatctggtggcacaaaaacatgagggagcatgagataacg 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16621118 aaaggcgcaccagattaaaagacagtttcaacaacagccatcagatcgtggaattatccagatctggtggcacaaaaacatgagggagcatgagataacg 16621217  T
Q  112 gtggatgcacgcgcgtgggaacgagagtgagtataaaaggaatattctagtttaagatttcatt 175  Q
    | |||||||| ||||||||| |||||||||||||||||||||||||||  ||||||||||||||    
T  16621218 gaggatgcacacgcgtgggatcgagagtgagtataaaaggaatattctgatttaagatttcatt 16621281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 290 - 430
Target Start/End: Original strand, 16911195 - 16911332
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctcttttctnnnnnnnncttttaacagattcgaaattcctttttcgttct 389  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||        |||||||||| || |||||||||||||||||||    
T  16911195 ttccggcgcggtggccggtggtggcaccaccacgctggaatttcaaactcctcttttctaaaaa---cttttaacagttttgaaattcctttttcgttct 16911291  T
Q  390 aaactcaaatccggattcacaatttcaaaaacagttcacaa 430  Q
    | |||||||||||||||||||||||||||||||||||||||    
T  16911292 agactcaaatccggattcacaatttcaaaaacagttcacaa 16911332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 17515792 - 17515848
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctctttt 346  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17515792 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctctttt 17515848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 17537422 - 17537366
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctctttt 346  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17537422 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctctttt 17537366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 559885 - 559941
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctctttt 346  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  559885 ttccagcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctctttt 559941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 569794 - 569850
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctctttt 346  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  569794 ttccagcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctctttt 569850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 38411827 - 38411779
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaact 338  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38411827 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaact 38411779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 5200601 - 5200647
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 336  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  5200601 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 5200647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 5209730 - 5209776
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 336  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  5209730 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 5209776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 27967388 - 27967434
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 336  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  27967388 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 27967434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 27976841 - 27976887
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 336  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  27976841 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 27976887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 15974785 - 15974747
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15974785 ttccggcgcggtggccggtggtggcaccaccgcgccgga 15974747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 16474424 - 16474477
Alignment:
Q  295 gcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctcttttct 348  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||||||| |||||    
T  16474424 gcgcggtggccgatggtggcaccaccgcgccggagttttaaactcctcctttct 16474477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 4185225 - 4185173
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    |||||||||||||||||| |||||||||||||||||||| ||  |||||||||    
T  4185225 ttccggcgcggtggccggcggtggcaccaccgcgccggagttcgaaactcctc 4185173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 252 - 583
Target Start/End: Complemental strand, 20500981 - 20500660
Alignment:
Q  252 tgaagaacaatcttcatcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctcttttctnnn 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||| ||||||| |||||||||||||||||||       
T  20500981 tgaagaacaatcttcatcttctccgacgggattgtatcttccggcgcggtgg-------tggcaccaccacgccggagtttcaaactcctcttttctaaa 20500889  T
Q  352 nnnnncttttaacagattcgaaattcctttttcgttctaaactcaaatccggattcacaatttcaaaaacagttcacaaacactctagatctaagattaa 451  Q
         |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  20500888 aa---cttttaacaatttcgaaattcctttttcgttctaaactcaaatccggattcacaatttcaaaaacagttcacaaacactgtagatttaagattaa 20500792  T
Q  452 acacggcacaaagaaacaaaaatgaaactaccttttcttctctttttggattggtttatttgttgtagcttgtgatgattccggttcgttcctccttctt 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  20500791 acacggcacaaagaaacaaaaatgaaactaccttttcttctctttttggattggtttatttgttttagcttgtgatgattccggttcgttcctcctactt 20500692  T
Q  552 taccttcaggtccgattcgaactcgtttgatg 583  Q
     |||||||||||||||||||||||||||||||    
T  20500691 caccttcaggtccgattcgaactcgtttgatg 20500660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 20501218 - 20501052
Alignment:
Q  9 agcaaaggtgcaccagattaaaagacagtttcaacaacagccatcagatcgtggaactatccagatctggtggcacaaaaacatgagggagcatgagata 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20501218 agcaaaggcgcaccagattaaaagacagtttcaacaacagccatcagatcgtggaactatcaagatctggtggcacaaaaacatgagggagcatgagata 20501119  T
Q  109 acggtggatgcacgcgcgtgggaacgagagtgagtataaaaggaatattctagtttaagatttcatt 175  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||  || |||||||||||    
T  20501118 acggtggatgcacgcgcgtgggatcgagagtgagtataaaaggaatattctgattaaagatttcatt 20501052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 594 - 676
Target Start/End: Complemental strand, 20500680 - 20500599
Alignment:
Q  594 ccgatttgaactcgtttggatgtagaaagtggcgagatgataatagatgagttgtttgttggtaaaatcgcaggtgatgttat 676  Q
    |||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20500680 ccgattcgaactcgtttg-atgtagaaagtggcgagatgataatggatgagttgtttgttggtaaaatcgcaggtgatgttat 20500599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 18750247 - 18750191
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctctttt 346  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  18750247 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctttttt 18750191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 13463877 - 13463839
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13463877 ttccggcgcggtggccggtggtggcaccaccgcgccgga 13463839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 18597138 - 18597086
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    |||||||||||||||||| |||||||||||||||||||| ||  |||||||||    
T  18597138 ttccggcgcggtggccggcggtggcaccaccgcgccggagttcgaaactcctc 18597086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 3650842 - 3650804
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  3650842 ttccggcgcggtggccggtggtggcaccgccgcgccgga 3650804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 328
Target Start/End: Original strand, 179827 - 179862
Alignment:
Q  293 cggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    ||||||| ||||||||||||||||||||||||||||    
T  179827 cggcgcgatggccggtggtggcaccaccgcgccgga 179862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 320
Target Start/End: Complemental strand, 8402158 - 8402128
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccacc 320  Q
    |||||||||||||||||||||||||||||||    
T  8402158 ttccggcgcggtggccggtggtggcaccacc 8402128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 290 - 322
Target Start/End: Complemental strand, 35197985 - 35197953
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgc 322  Q
    |||||||||||||||| ||||||||||||||||    
T  35197985 ttccggcgcggtggcctgtggtggcaccaccgc 35197953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 5e-61; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 9 - 164
Target Start/End: Original strand, 31355990 - 31356145
Alignment:
Q  9 agcaaaggtgcaccagattaaaagacagtttcaacaacagccatcagatcgtggaactatccagatctggtggcacaaaaacatgagggagcatgagata 108  Q
    ||||| || |||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  31355990 agcaagggcgcaccagattaaaagatagtttcaacaatggccatcagatcgtggaactatccagatctggtggcgcaaaaacatgaaggagcatgagata 31356089  T
Q  109 acggtggatgcacgcgcgtgggaacgagagtgagtataaaaggaatattctagttt 164  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  31356090 acggtggatgcacgcgcgtgggatcgagagtgagtataaaaggaatattctggttt 31356145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 598 - 676
Target Start/End: Original strand, 31356551 - 31356629
Alignment:
Q  598 tttgaactcgtttggatgtagaaagtggcgagatgataatagatgagttgtttgttggtaaaatcgcaggtgatgttat 676  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31356551 tttgaactcgtttggatgtagaaagtggcgagatgataatagatgagttgtttgttggtaaaatcgcaggtgatgttat 31356629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 265 - 343
Target Start/End: Original strand, 17686355 - 17686433
Alignment:
Q  265 tcatcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctct 343  Q
    |||||||||||| || ||  || | |||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  17686355 tcatcttctccggcgagacagtgttttccggcgcgatggccggtggtggcaccaccgcgccggagtttcaaactcctct 17686433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 21851540 - 21851596
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctctttt 346  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||    
T  21851540 ttccggcgcggtggccggtggtggcaccaccgcgccggagttttaaactcctttttt 21851596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 21859975 - 21860031
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctctttt 346  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||    
T  21859975 ttccggcgcggtggccggtggtggcaccaccgcgccggagttttaaactcctttttt 21860031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 25262634 - 25262588
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 336  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  25262634 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 25262588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 33308187 - 33308233
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 336  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  33308187 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 33308233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 20622524 - 20622461
Alignment:
Q  265 tcatcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||| || ||| || | |||| ||||||||||||||||||||||||||||||||||    
T  20622524 tcatcttctccggcgagatagtgttttccagcgcggtggccggtggtggcaccaccgcgccgga 20622461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 21322005 - 21322043
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21322005 ttccggcgcggtggccggtggtggcaccaccgcgccgga 21322043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 34543048 - 34543086
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34543048 ttccggcgcggtggccggtggtggcaccaccgcgccgga 34543086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 39756340 - 39756287
Alignment:
Q  289 cttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    ||||||||||||||||||| |||||||||||||||||||| ||  |||||||||    
T  39756340 cttccggcgcggtggccggcggtggcaccaccgcgccggagttcgaaactcctc 39756287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 27425290 - 27425342
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    |||||||||||||||||| |||||||||||||||||||| ||  |||||||||    
T  27425290 ttccggcgcggtggccggcggtggcaccaccgcgccggagttcgaaactcctc 27425342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 27440336 - 27440388
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    |||||||||||||||||| |||||||||||||||||||| ||  |||||||||    
T  27440336 ttccggcgcggtggccggcggtggcaccaccgcgccggagttcgaaactcctc 27440388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 290 - 325
Target Start/End: Original strand, 34529074 - 34529109
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgcc 325  Q
    ||||||||||||||||||||||||||||||||||||    
T  34529074 ttccggcgcggtggccggtggtggcaccaccgcgcc 34529109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 294 - 328
Target Start/End: Complemental strand, 22186127 - 22186093
Alignment:
Q  294 ggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||||||||||||||||||||    
T  22186127 ggcgcggtggccggtggtggcaccaccgcgccgga 22186093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 28479977 - 28479928
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactc 339  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||| ||||||    
T  28479977 ttccggcgcagtggccggtggtggcgccaccgcgccggagttttaaactc 28479928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 21150067 - 21150015
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    |||||||||||| || ||||||||| ||||||||||||| ||| |||||||||    
T  21150067 ttccggcgcggtagctggtggtggcgccaccgcgccggagttttaaactcctc 21150015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 25995531 - 25995566
Alignment:
Q  294 ggcgcggtggccggtggtggcaccaccgcgccggaa 329  Q
    |||||||||||||||||||||||||||||| |||||    
T  25995531 ggcgcggtggccggtggtggcaccaccgcgtcggaa 25995566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 337
Target Start/End: Original strand, 27605541 - 27605587
Alignment:
Q  291 tccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaac 337  Q
    |||||| |||||||||| ||||||||||||||| |||| ||||||||    
T  27605541 tccggcacggtggccggaggtggcaccaccgcgtcggagtttcaaac 27605587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 376 - 430
Target Start/End: Original strand, 31356332 - 31356386
Alignment:
Q  376 tcctttttcgttctaaactcaaatccggattcacaatttcaaaaacagttcacaa 430  Q
    ||||||||| | ||||||||||||||||  |||||||||||||| ||||| ||||    
T  31356332 tcctttttcttcctaaactcaaatccgggctcacaatttcaaaagcagttgacaa 31356386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 44373781 - 44373736
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 336  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||||    
T  44373781 ttccggcgcggtggccggtggt-gcaccaccgtgccggagtttcaaa 44373736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 44389692 - 44389647
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 336  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||||    
T  44389692 ttccggcgcggtggccggtggt-gcaccaccgtgccggagtttcaaa 44389647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 4281606 - 4281573
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcg 323  Q
    ||||||||||||||||||||||||||| ||||||    
T  4281606 ttccggcgcggtggccggtggtggcactaccgcg 4281573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 328
Target Start/End: Original strand, 25193113 - 25193146
Alignment:
Q  295 gcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||| |||||||||||||||||||||||||||||    
T  25193113 gcgcagtggccggtggtggcaccaccgcgccgga 25193146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 290 - 430
Target Start/End: Original strand, 4504932 - 4505070
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctcttttctnnnnnnnncttttaacagattcgaaattcctttttcgttct 389  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||        |||||||||| || |||||||||||||||||||    
T  4504932 ttccggcgcggtggccggtggtggcaccaccacgccggaatttcaaactcctcttttctaaaaaa--cttttaacagttttgaaattcctttttcgttct 4505029  T
Q  390 aaactcaaatccggattcacaatttcaaaaacagttcacaa 430  Q
    | |||||||||||||||||||||||||||||||||||||||    
T  4505030 agactcaaatccggattcacaatttcaaaaacagttcacaa 4505070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 18040274 - 18040180
Alignment:
Q  9 agcaaaggtgcaccagattaaaagacagtttcaacaacagccatcagatcgtggaactatccagatctggtggcacaaaaacatgagggagcatg 103  Q
    |||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18040274 agcaaaggcgcaccagattaaaagacaatttcaacaatagccatcagatcgtggaactatccagatctggtggcacaaaaacatgagggagcatg 18040180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 1005749 - 1005795
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 336  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  1005749 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 1005795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 2216563 - 2216615
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    |||||| |||||||||||||||||| ||||||||||||| |||||||||||||    
T  2216563 ttccggtgcggtggccggtggtggcgccaccgcgccggagtttcaaactcctc 2216615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 16289594 - 16289542
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| ||| |||||    
T  16289594 ttccggcgcggtggccggtggtggcgccaccgcgccggagttttaaagtcctc 16289542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 52987499 - 52987461
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  52987499 ttccggcgcggtggtcggtggtggcaccaccgcgccgga 52987461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 11262289 - 11262326
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgg 327  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  11262289 ttccggcgcggtggccggtggtggcgccaccgcgccgg 11262326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 4444396 - 4444344
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    |||||||||||||||||| |||||||||||| ||||||| ||  |||||||||    
T  4444396 ttccggcgcggtggccggcggtggcaccaccacgccggagttcaaaactcctc 4444344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 13603387 - 13603435
Alignment:
Q  293 cggcgcggtggccggtggtggcaccaccgcgccgga-atttcaaactcc 340  Q
    |||||||||||||| |||||||||||||||||||||  |||||||||||    
T  13603387 cggcgcggtggccgatggtggcaccaccgcgccggagttttcaaactcc 13603435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 1775881 - 1775843
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  1775881 ttccggcgcggtggccggtggtggcgccgccgcgccgga 1775843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 4887734 - 4887696
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  4887734 ttccggcgcggtggccggtggtggcgccgccgcgccgga 4887696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 5517769 - 5517807
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  5517769 ttccggcgcggtggccggtggtggcgccgccgcgccgga 5517807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 9184899 - 9184944
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 336  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||||    
T  9184899 ttccggcgcggtggccggtggt-gcaccaccgtgccggagtttcaaa 9184944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 18954624 - 18954661
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  18954624 ttccggcgcggtggccggtggt-gcaccaccgcgccgga 18954661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 20053220 - 20053182
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  20053220 ttccggcgcggtggccggtggtggcgccgccgcgccgga 20053182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 20075880 - 20075842
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  20075880 ttccggcgcggtggccggtggtggcgccgccgcgccgga 20075842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 23755546 - 23755578
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgc 322  Q
    |||||||||||||||||||||||| ||||||||    
T  23755546 ttccggcgcggtggccggtggtggtaccaccgc 23755578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 252 - 342
Target Start/End: Original strand, 29185230 - 29185320
Alignment:
Q  252 tgaagaacaatcttcatcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  29185230 tgaagaacaatcttcatcttctccgacgggattgtgtcttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctc 29185320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 31549535 - 31549591
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctctttt 346  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||    
T  31549535 ttccggcgcggtggccggtggtggcaccaccgcgccggagttttaaactcctttttt 31549591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 31411880 - 31411817
Alignment:
Q  265 tcatcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||| || ||| || | ||||||||||||||||||||||||||||||||| |||||    
T  31411880 tcatcttctccggcgagatagtgttttccggcgcggtggccggtggtggcaccaccgcaccgga 31411817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 31422788 - 31422725
Alignment:
Q  265 tcatcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||| || ||| || | |||||||||||||||||||||||||||||| ||||||||    
T  31422788 tcatcttctccggcgagatagtgttttccggcgcggtggccggtggtggcaccactgcgccgga 31422725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 23568514 - 23568476
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  23568514 ttccggcgcggtggccggtggtggcatcaccgcgccgga 23568476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 291 - 325
Target Start/End: Complemental strand, 29189294 - 29189260
Alignment:
Q  291 tccggcgcggtggccggtggtggcaccaccgcgcc 325  Q
    |||||||||||||||||||||||||||||||||||    
T  29189294 tccggcgcggtggccggtggtggcaccaccgcgcc 29189260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 329
Target Start/End: Original strand, 8949136 - 8949175
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaa 329  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  8949136 ttccgacgcggtggccggtggtggcaccaccgcgtcggaa 8949175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 2826915 - 2826877
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  2826915 ttccgacgcagtggccggtggtggcaccaccgcgccgga 2826877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 598 - 676
Target Start/End: Original strand, 21400774 - 21400852
Alignment:
Q  598 tttgaactcgtttggatgtagaaagtggcgagatgataatagatgagttgtttgttggtaaaatcgcaggtgatgttat 676  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21400774 tttgaactcgtttggatgtagaaagtggcgagatgataatagatgagttgtttgttggtaaaatcgcaggtgatgttat 21400852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 12997601 - 12997538
Alignment:
Q  265 tcatcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||| || ||| || | |||||||||||||||||||||||||||||||||||||||    
T  12997601 tcatcttctccggcgagatagtgttttccggcgcggtggccggtggtggcaccaccgcgccgga 12997538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 4749047 - 4749085
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4749047 ttccggcgcggtggccggtggtggcaccaccgcgccgga 4749085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 290 - 325
Target Start/End: Original strand, 20866843 - 20866878
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgcc 325  Q
    ||||||||||||||||||||||||||||||||||||    
T  20866843 ttccggcgcggtggccggtggtggcaccaccgcgcc 20866878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 772327 - 772289
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  772327 ttccggcgcggtggccggtggtggcacctccgcgccgga 772289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 32215970 - 32215932
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  32215970 ttccagcgcggtggccggtggtggcaccaccgcgccgga 32215932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 17141913 - 17141861
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| ||| |||||    
T  17141913 ttccggcgcggtagccggtggtggcgccaccgcgccggagttttaaaatcctc 17141861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 24923332 - 24923280
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    ||||||||| ||||||||||||||  ||||||||||||| ||| |||||||||    
T  24923332 ttccggcgcagtggccggtggtggtgccaccgcgccggagttttaaactcctc 24923280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 329
Target Start/End: Complemental strand, 48077683 - 48077644
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaa 329  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  48077683 ttccggcgcggtggccggtggtggcaccacctcgtcggaa 48077644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 298 - 328
Target Start/End: Original strand, 638076 - 638106
Alignment:
Q  298 cggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||||||||||||||||    
T  638076 cggtggccggtggtggcaccaccgcgccgga 638106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 5405296 - 5405334
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  5405296 ttccggcgcggtggccggtggtggcgccgccgcgccgga 5405334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 376 - 430
Target Start/End: Original strand, 21400555 - 21400609
Alignment:
Q  376 tcctttttcgttctaaactcaaatccggattcacaatttcaaaaacagttcacaa 430  Q
    ||||||||| | ||||||||||||||||  |||||||||||||| ||||| ||||    
T  21400555 tcctttttcttcctaaactcaaatccgggctcacaatttcaaaagcagttgacaa 21400609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 52296779 - 52296741
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  52296779 ttccgacgcggtggccggtggtggcaccactgcgccgga 52296741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 27048677 - 27048733
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctctttt 346  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27048677 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctctttt 27048733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 27058921 - 27058977
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctctttt 346  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27058921 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctctttt 27058977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 30996951 - 30996997
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 336  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  30996951 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 30996997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 3042442 - 3042390
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  3042442 ttccggcgcggtggccggtggtggcgccaccgcgccggagttttaaactcctc 3042390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 268 - 342
Target Start/End: Complemental strand, 24919240 - 24919166
Alignment:
Q  268 tcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    |||||||||| | ||||| || ||||||||||||||||||  ||||||||||||||||||| ||  |||||||||    
T  24919240 tcttctccgatgagattgaattttccggcgcggtggccggcagtggcaccaccgcgccggagttcgaaactcctc 24919166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 16587850 - 16587801
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactc 339  Q
    |||||||||||| |||||||||||| ||||||||||||| ||||||||||    
T  16587850 ttccggcgcggttgccggtggtggcgccaccgcgccggagtttcaaactc 16587801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 16607530 - 16607579
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactc 339  Q
    |||||||||||| |||||||||||| ||||||||||||| ||||||||||    
T  16607530 ttccggcgcggttgccggtggtggcgccaccgcgccggagtttcaaactc 16607579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 5995755 - 5995695
Alignment:
Q  268 tcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    ||||||||| || ||| || | ||||||| |||||||||||||||||||||||||||||||    
T  5995755 tcttctccggcgagatagtgttttccggcacggtggccggtggtggcaccaccgcgccgga 5995695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 15390685 - 15390729
Alignment:
Q  292 ccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 336  Q
    |||||||||||||||||| |||||||||||||||||| |||||||    
T  15390685 ccggcgcggtggccggtgttggcaccaccgcgccggagtttcaaa 15390729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 1141806 - 1141768
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  1141806 ttccggcgcggtggccggtggtggcaccgccgcgccgga 1141768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 5488168 - 5488206
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  5488168 ttccggcacggtggccggtggtggcaccaccgcgccgga 5488206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 20216066 - 20216028
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  20216066 ttccggcgcggtggccggcggtggcaccaccgcgccgga 20216028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 22110087 - 22110049
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  22110087 ttccggcgcggtggccggcggtggcaccaccgcgccgga 22110049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 24296431 - 24296483
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    |||||||||||||||||| |||||||||||| ||||||| ||  |||||||||    
T  24296431 ttccggcgcggtggccggcggtggcaccaccacgccggagttcaaaactcctc 24296483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 24310462 - 24310514
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    |||||||||||||||||| |||||||||||| ||||||| ||  |||||||||    
T  24310462 ttccggcgcggtggccggcggtggcaccaccacgccggagttcaaaactcctc 24310514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1120 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold1120
Description:

Target: scaffold1120; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 463 - 384
Alignment:
Q  264 ttcatcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctct 343  Q
    |||||||||||||||| | |  | | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  463 ttcatcttctccgacgagttcatgttttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctct 384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 4838693 - 4838756
Alignment:
Q  265 tcatcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||| || ||| || | |||||||||||||||||||||||||||||||||||||||    
T  4838693 tcatcttctccggcgagatagtgttttccggcgcggtggccggtggtggcaccaccgcgccgga 4838756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 26872637 - 26872700
Alignment:
Q  265 tcatcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||| || ||| || | |||||||||||||||||||||||||||||||||||||||    
T  26872637 tcatcttctccggcgagatagtgttttccggcgcggtggccggtggtggcaccaccgcgccgga 26872700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 36577969 - 36578009
Alignment:
Q  288 tcttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36577969 tcttccggcgcggtggccggtggtggcaccaccgcgccgga 36578009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 23091597 - 23091551
Alignment:
Q  296 cgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||    
T  23091597 cgcggtggccggtggtggcaccaccgcgccggagttttaaactcctc 23091551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 4836550 - 4836512
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  4836550 ttccggcgtggtggccggtggtggcaccaccgcgccgga 4836512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 4841995 - 4841957
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  4841995 ttccggcgtggtggccggtggtggcaccaccgcgccgga 4841957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 26875120 - 26875158
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  26875120 ttccgacgcggtggccggtggtggcaccaccgcgccgga 26875158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 17663609 - 17663679
Alignment:
Q  265 tcatcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 336  Q
    |||||||||||| || ||  || | |||||||||||||||||||||| ||||||||| |||||| |||||||    
T  17663609 tcatcttctccggcgagacagtgttttccggcgcggtggccggtggt-gcaccaccgtgccggagtttcaaa 17663679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 17682765 - 17682835
Alignment:
Q  265 tcatcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 336  Q
    |||||||||||| || ||  || | |||||||||||||||||||||| ||||||||| |||||| |||||||    
T  17682765 tcatcttctccggcgagacagtgttttccggcgcggtggccggtggt-gcaccaccgtgccggagtttcaaa 17682835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 2750241 - 2750279
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  2750241 ttccagcgcggtggccggtggtggaaccaccgcgccgga 2750279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1896 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1896
Description:

Target: scaffold1896; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 507 - 444
Alignment:
Q  265 tcatcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||| || ||| || | ||||||||||||||||||| |||||||||||||||||||    
T  507 tcatcttctccggcgagatagtgttttccggcgcggtggccggtagtggcaccaccgcgccgga 444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 265 - 343
Target Start/End: Original strand, 64648 - 64726
Alignment:
Q  265 tcatcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctct 343  Q
    |||||||||||| || ||  || | |||||||||||||| || ||||||||||||||||||||| |||||| |||||||    
T  64648 tcatcttctccggcgagacagtgttttccggcgcggtggtcgttggtggcaccaccgcgccggagtttcaacctcctct 64726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 24536 - 24491
Alignment:
Q  291 tccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 336  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||    
T  24536 tccggcgcggtggccggtggtggcaccaccgcaccggagtttcaaa 24491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 2505 - 2557
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| |||||||||    
T  2505 ttccggcgcggtagccggtggtggcgccaccgcgccggagttttaaactcctc 2557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 19557 - 19505
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    |||||||||||||||||| |||||||||||||||||||| ||  |||||||||    
T  19557 ttccggcgcggtggccggcggtggcaccaccgcgccggagttctaaactcctc 19505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2141 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold2141
Description:

Target: scaffold2141; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 197 - 159
Alignment:
Q  290 ttccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  197 ttccggcgcggtggccggtggtggcaccgccgcgccgga 159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 342
Target Start/End: Complemental strand, 4334 - 4260
Alignment:
Q  268 tcttctccgacgggattgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 342  Q
    |||||||||||| ||||| || |||| |||||||| |||| || ||||||||||||||||| ||  |||||||||    
T  4334 tcttctccgacgagattgaattttccagcgcggtgaccggcggcggcaccaccgcgccggagttcgaaactcctc 4260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 6035 - 6071
Alignment:
Q  292 ccggcgcggtggccggtggtggcaccaccgcgccgga 328  Q
    |||||||||||||||||||||||||||||| ||||||    
T  6035 ccggcgcggtggccggtggtggcaccaccgtgccgga 6071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University