View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_91 (Length: 325)
Name: NF18178_low_91
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_91 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 84 - 319
Target Start/End: Original strand, 16699906 - 16700141
Alignment:
| Q |
84 |
ggagtatttgttttacgttcttttaccttagtgttgatagcatcagcactacttaaaattaatgatgcaaaagagtgtgatgaattttacgttgttagag |
183 |
Q |
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| T |
16699906 |
ggagtatttgttttacgttcttttaccttagtgttgatagcatcagcactactcaaaattaatgatgcaaaagagtgtgatgaattttacgttgttagag |
16700005 |
T |
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| Q |
184 |
aaggtgataccttttatagcatagcagagaagtgcaatgatccatttatcttgttatcgaatccacatgtccgtgatcctcaagatatctaacataaata |
283 |
Q |
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| T |
16700006 |
aaggtgataccttttatagcatagcagagaagtgcaatgatccatttatcttgttatcgaatccacatgtccgtgatcctcaagatatctaacataaata |
16700105 |
T |
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| Q |
284 |
aagcttgctttgcttgtgttgttgttttgatgatgt |
319 |
Q |
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| T |
16700106 |
aagcttgctttgcttgtgttgttgttttgatgatgt |
16700141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16699751 - 16699797
Alignment:
| Q |
1 |
ttgaatggattaattgtagtcaagaaattatttaatttatttcatct |
47 |
Q |
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| T |
16699751 |
ttgaatggattaattgtagtcaagaaattttttaatttatttcatct |
16699797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 319
Target Start/End: Original strand, 22846323 - 22846358
Alignment:
| Q |
284 |
aagcttgctttgcttgtgttgttgttttgatgatgt |
319 |
Q |
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| T |
22846323 |
aagcttgctttgcatgtgttgttgttttgatgatgt |
22846358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 260
Target Start/End: Original strand, 17322578 - 17322679
Alignment:
| Q |
159 |
tgtgatgaattttacgttgttagagaaggtgataccttttatagcatagcagagaagtgcaatgatccatttatcttgttatcgaatccacatgtccgtg |
258 |
Q |
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| T |
17322578 |
tgtgatgaattttagatggttaaagaaggggaaacctattatagtatagcggagaagtgtgatgatcaatctatcttgttctccaatccaaatgtccatg |
17322677 |
T |
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| Q |
259 |
at |
260 |
Q |
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|| |
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| T |
17322678 |
at |
17322679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 319
Target Start/End: Complemental strand, 36005 - 35971
Alignment:
| Q |
285 |
agcttgctttgcttgtgttgttgttttgatgatgt |
319 |
Q |
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| T |
36005 |
agcttgctttgcctgtgttgttgttttgatgatgt |
35971 |
T |
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